RNA–Protein interactions for RNA: ENST00000325404.2

SOX2-201, Transcript of SRY-box 2, humanhuman

APPRIS P1 BASIC

Gene SOX2, Length 2,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2-201ENST00000325404 PRR34Q9NV39 138 aa13.49□□□□□ -0.25
SOX2-201ENST00000325404 SPART-AS1P0CW21 52 aa13.49□□□□□ -0.25
SOX2-201ENST00000325404 Q8N3U1 123 aa13.48□□□□□ -0.25
SOX2-201ENST00000325404 DEFB4AO15263 64 aa13.48□□□□□ -0.25
SOX2-201ENST00000325404 C9orf116Q5BN46 136 aaPredicted RBP13.48□□□□□ -0.25
SOX2-201ENST00000325404 GVQW2A0A096LPI5 108 aaPredicted RBP13.47□□□□□ -0.25
SOX2-201ENST00000325404 RPL18AQ02543 176 aaKnown RBP13.47□□□□□ -0.25
SOX2-201ENST00000325404 SPAG11BQ08648 103 aa13.47□□□□□ -0.25
SOX2-201ENST00000325404 C9orf153Q5TBE3 101 aa13.47□□□□□ -0.25
SOX2-201ENST00000325404 LINC00575Q6W349 94 aa13.47□□□□□ -0.25
SOX2-201ENST00000325404 ATP5EP2Q5VTU8 51 aa13.47□□□□□ -0.25
SOX2-201ENST00000325404 C2orf48Q96LS8 159 aa13.47□□□□□ -0.25
SOX2-201ENST00000325404 C6orf99Q4VX62 202 aa13.46□□□□□ -0.25
SOX2-201ENST00000325404 CELA1Q9UNI1 258 aa13.46□□□□□ -0.25
SOX2-201ENST00000325404 Q8NDZ9 215 aa13.45□□□□□ -0.26
SOX2-201ENST00000325404 H3BQ85 93 aa13.44□□□□□ -0.26
SOX2-201ENST00000325404 OXLD1Q5BKU9 147 aa13.44□□□□□ -0.26
SOX2-201ENST00000325404 IGKV3D-7A0A0C4DH55 119 aa13.44□□□□□ -0.26
SOX2-201ENST00000325404 UNQ6190/PRO20217Q6UXQ8 127 aa13.44□□□□□ -0.26
SOX2-201ENST00000325404 STAB1Q9NY15 2570 aa13.44□□□□□ -0.26
SOX2-201ENST00000325404 FBN1P35555 2871 aaKnown RBP13.43□□□□□ -0.26
SOX2-201ENST00000325404 IGLV6-57P01721 117 aa13.43□□□□□ -0.26
SOX2-201ENST00000325404 CRYGAP11844 174 aa13.43□□□□□ -0.26
SOX2-201ENST00000325404 MAST4O15021 2626 aa13.43□□□□□ -0.26
SOX2-201ENST00000325404 C10orf25Q5T742 122 aa13.43□□□□□ -0.26
SOX2-201ENST00000325404 LYPD5Q6UWN5 251 aa13.43□□□□□ -0.26
SOX2-201ENST00000325404 NBEAL2Q6ZNJ1 2754 aa13.42□□□□□ -0.26
SOX2-201ENST00000325404 hADV29S1A0JD25 119 aa13.4□□□□□ -0.26
SOX2-201ENST00000325404 C6orf223Q8N319 242 aa13.4□□□□□ -0.26
SOX2-201ENST00000325404 TRBV10-3A0A0K0K1G6 114 aa13.39□□□□□ -0.27
SOX2-201ENST00000325404 ZNF561-AS1K7EIQ3 104 aa13.39□□□□□ -0.27
SOX2-201ENST00000325404 ENHOQ6UWT2 76 aa13.39□□□□□ -0.27
SOX2-201ENST00000325404 LOC110117498A0A087WWA1 95 aa13.38□□□□□ -0.27
SOX2-201ENST00000325404 KLK12Q9UKR0 248 aa13.38□□□□□ -0.27
SOX2-201ENST00000325404 KRTAP10-11P60412 298 aa13.38□□□□□ -0.27
SOX2-201ENST00000325404 SERP2Q8N6R1 65 aa13.37□□□□□ -0.27
SOX2-201ENST00000325404 EGFEM1PQ0D2K5 195 aa13.36□□□□□ -0.27
SOX2-201ENST00000325404 RBM3P98179 157 aaKnown RBP13.36□□□□□ -0.27
SOX2-201ENST00000325404 USP17L23D6RBM5 183 aa13.35□□□□□ -0.27
SOX2-201ENST00000325404 H3BNG1 76 aa13.35□□□□□ -0.27
SOX2-201ENST00000325404 HTN3P15516 51 aa13.35□□□□□ -0.27
SOX2-201ENST00000325404 Q6ZQT0 140 aa13.34□□□□□ -0.27
SOX2-201ENST00000325404 UBL5Q9BZL1 73 aa13.34□□□□□ -0.27
SOX2-201ENST00000325404 PDE6GP18545 87 aa13.34□□□□□ -0.27
SOX2-201ENST00000325404 C6orf48Q9UBA6 75 aa13.33□□□□□ -0.28
SOX2-201ENST00000325404 COL6A5A8TX70 2615 aa13.33□□□□□ -0.28
SOX2-201ENST00000325404 A0A087WVE0 104 aa13.32□□□□□ -0.28
SOX2-201ENST00000325404 TRBV7-6A0A0J9YX20 115 aa13.32□□□□□ -0.28
SOX2-201ENST00000325404 GHRHP01286 108 aa13.31□□□□□ -0.28
SOX2-201ENST00000325404 C5orf47Q569G3 176 aa13.3□□□□□ -0.28
SOX2-201ENST00000325404 TRAV23DV6A0A075B6W5 121 aa13.3□□□□□ -0.28
SOX2-201ENST00000325404 DIRC1Q969H9 104 aa13.3□□□□□ -0.28
SOX2-201ENST00000325404 UPK3BQ9BT76 320 aa13.28□□□□□ -0.28
SOX2-201ENST00000325404 LAMTOR3Q9UHA4 124 aa13.28□□□□□ -0.28
SOX2-201ENST00000325404 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.28□□□□□ -0.28
SOX2-201ENST00000325404 PKD1L1Q8TDX9 2849 aa13.28□□□□□ -0.28
SOX2-201ENST00000325404 Q6ZQY7 126 aa13.26□□□□□ -0.29
SOX2-201ENST00000325404 KRTAP26-1Q6PEX3 210 aa13.26□□□□□ -0.29
SOX2-201ENST00000325404 DSCR8Q96T75 97 aa13.26□□□□□ -0.29
SOX2-201ENST00000325404 BCE1O60756 84 aa13.25□□□□□ -0.29
SOX2-201ENST00000325404 ZNF73O43830 326 aaPredicted RBP13.24□□□□□ -0.29
SOX2-201ENST00000325404 CMYA5Q8N3K9 4069 aa13.23□□□□□ -0.29
SOX2-201ENST00000325404 F8WDY8 70 aa13.23□□□□□ -0.29
SOX2-201ENST00000325404 COX7BP24311 80 aa13.23□□□□□ -0.29
SOX2-201ENST00000325404 ELOF1P60002 83 aaKnown RBP13.23□□□□□ -0.29
SOX2-201ENST00000325404 VPREB1P12018 145 aa13.22□□□□□ -0.29
SOX2-201ENST00000325404 XAGE1AQ9HD64 81 aa13.22□□□□□ -0.29
SOX2-201ENST00000325404 RETNQ9HD89 108 aa13.22□□□□□ -0.29
SOX2-201ENST00000325404 RPS28P62857 69 aaKnown RBP13.22□□□□□ -0.29
SOX2-201ENST00000325404 KPRPQ5T749 579 aaPredicted RBP13.22□□□□□ -0.29
SOX2-201ENST00000325404 CAMK2N2Q96S95 79 aa13.22□□□□□ -0.29
SOX2-201ENST00000325404 M0R378 163 aa13.21□□□□□ -0.29
SOX2-201ENST00000325404 TMEM258P61165 79 aa13.21□□□□□ -0.29
SOX2-201ENST00000325404 FAM19A1Q7Z5A9 133 aa13.21□□□□□ -0.29
SOX2-201ENST00000325404 WFDC10BQ8IUB3 73 aa13.2□□□□□ -0.3
SOX2-201ENST00000325404 TRBV7-4A0A0J9YYF1 115 aa13.18□□□□□ -0.3
SOX2-201ENST00000325404 NDUFC2-KCTD14E9PQ53 114 aa13.18□□□□□ -0.3
SOX2-201ENST00000325404 J3KT08 172 aa13.17□□□□□ -0.3
SOX2-201ENST00000325404 CXCL6P80162 114 aa13.17□□□□□ -0.3
SOX2-201ENST00000325404 Q6ZVQ6 151 aa13.17□□□□□ -0.3
SOX2-201ENST00000325404 LINC01547P58512 204 aaPredicted RBP13.16□□□□□ -0.3
SOX2-201ENST00000325404 C15orf56Q8N910 161 aa13.16□□□□□ -0.3
SOX2-201ENST00000325404 HIGD2BQ4VC39 106 aa13.16□□□□□ -0.3
SOX2-201ENST00000325404 NOTCH1P46531 2555 aa13.16□□□□□ -0.3
SOX2-201ENST00000325404 Q6ZRU5 148 aa13.15□□□□□ -0.3
SOX2-201ENST00000325404 CYSTM1Q9H1C7 97 aa13.15□□□□□ -0.3
SOX2-201ENST00000325404 M0R2N4 97 aa13.14□□□□□ -0.31
SOX2-201ENST00000325404 DNAH3Q8TD57 4116 aa13.14□□□□□ -0.31
SOX2-201ENST00000325404 LINC00528Q8N1L1 170 aa13.13□□□□□ -0.31
SOX2-201ENST00000325404 LINC01556Q5JQF7 62 aa13.12□□□□□ -0.31
SOX2-201ENST00000325404 ESRGQ1W209 222 aa13.11□□□□□ -0.31
SOX2-201ENST00000325404 Q6ZTC4 211 aa13.11□□□□□ -0.31
SOX2-201ENST00000325404 C1orf43Q9BWL3 253 aa13.11□□□□□ -0.31
SOX2-201ENST00000325404 ANK2Q01484 3957 aa13.11□□□□□ -0.31
SOX2-201ENST00000325404 TRAV7A0A075B6U4 112 aa13.09□□□□□ -0.31
SOX2-201ENST00000325404 PRB2P02812 416 aaPredicted RBP13.09□□□□□ -0.31
SOX2-201ENST00000325404 HAMPP81172 84 aa13.09□□□□□ -0.31
SOX2-201ENST00000325404 NBEAL1Q6ZS30 2694 aa13.08□□□□□ -0.32
SOX2-201ENST00000325404 LOC107984640A0A0U1RRK4 108 aa13.07□□□□□ -0.32
SOX2-201ENST00000325404 DPH3Q96FX2 82 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms