RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 LINC01561Q8N1V8 128 aa7.68□□□□□ -1.18
CUX1-202ENST00000292538 COL7A1Q02388 2944 aa7.68□□□□□ -1.18
CUX1-202ENST00000292538 LINC00588Q9Y4M8 146 aa7.68□□□□□ -1.18
CUX1-202ENST00000292538 H3BT86 120 aa7.67□□□□□ -1.18
CUX1-202ENST00000292538 MT-ATP8P03928 68 aa7.67□□□□□ -1.18
CUX1-202ENST00000292538 COX17Q14061 63 aa7.67□□□□□ -1.18
CUX1-202ENST00000292538 C5orf47Q569G3 176 aa7.67□□□□□ -1.18
CUX1-202ENST00000292538 TM2D3Q9BRN9 247 aa7.67□□□□□ -1.18
CUX1-202ENST00000292538 CDIP1Q9H305 208 aa7.67□□□□□ -1.18
CUX1-202ENST00000292538 SEC61GP60059 68 aa7.67□□□□□ -1.18
CUX1-202ENST00000292538 Q6ZRU5 148 aa7.67□□□□□ -1.18
CUX1-202ENST00000292538 C6orf99Q4VX62 202 aa7.66□□□□□ -1.18
CUX1-202ENST00000292538 XGP55808 180 aa7.65□□□□□ -1.18
CUX1-202ENST00000292538 LYSTQ99698 3801 aa7.65□□□□□ -1.18
CUX1-202ENST00000292538 DNAH3Q8TD57 4116 aa7.65□□□□□ -1.18
CUX1-202ENST00000292538 HUWE1Q7Z6Z7 4374 aaKnown RBP7.65□□□□□ -1.18
CUX1-202ENST00000292538 LINC01556Q5JQF7 62 aa7.65□□□□□ -1.18
CUX1-202ENST00000292538 C15orf53Q8NAA6 179 aa7.65□□□□□ -1.18
CUX1-202ENST00000292538 TMEM126AQ9H061 195 aa7.65□□□□□ -1.18
CUX1-202ENST00000292538 CASC10Q5T4H9 136 aa7.65□□□□□ -1.19
CUX1-202ENST00000292538 CSMD3Q7Z407 3707 aa7.64□□□□□ -1.19
CUX1-202ENST00000292538 TRACP01848 142 aa7.64□□□□□ -1.19
CUX1-202ENST00000292538 C15orf56Q8N910 161 aa7.64□□□□□ -1.19
CUX1-202ENST00000292538 H0YGX0 51 aa7.63□□□□□ -1.19
CUX1-202ENST00000292538 C9orf129Q5T035 196 aaKnown RBP7.62□□□□□ -1.19
CUX1-202ENST00000292538 TTC32Q5I0X7 151 aa7.62□□□□□ -1.19
CUX1-202ENST00000292538 KRTAP26-1Q6PEX3 210 aa7.62□□□□□ -1.19
CUX1-202ENST00000292538 GAGE2AQ6NT46 116 aa7.62□□□□□ -1.19
CUX1-202ENST00000292538 C14orf132Q9NPU4 83 aa7.61□□□□□ -1.19
CUX1-202ENST00000292538 TRBV10-3A0A0K0K1G6 114 aa7.61□□□□□ -1.19
CUX1-202ENST00000292538 NDUFC2O95298 119 aa7.6□□□□□ -1.19
CUX1-202ENST00000292538 UBE2DNLQ8IWF7 75 aa7.6□□□□□ -1.19
CUX1-202ENST00000292538 SYCNQ0VAF6 134 aa7.6□□□□□ -1.19
CUX1-202ENST00000292538 DNAH10OSP0CZ25 163 aa7.59□□□□□ -1.19
CUX1-202ENST00000292538 Q6ZRP5 223 aa7.59□□□□□ -1.19
CUX1-202ENST00000292538 PPDPFQ9H3Y8 114 aa7.59□□□□□ -1.19
CUX1-202ENST00000292538 SNCGO76070 127 aa7.58□□□□□ -1.2
CUX1-202ENST00000292538 USP17L23D6RBM5 183 aa7.58□□□□□ -1.2
CUX1-202ENST00000292538 ORMDL1Q9P0S3 153 aa7.58□□□□□ -1.2
CUX1-202ENST00000292538 C22orf24Q9Y442 160 aa7.58□□□□□ -1.2
CUX1-202ENST00000292538 Q8N814 137 aa7.57□□□□□ -1.2
CUX1-202ENST00000292538 NDUFC2-KCTD14E9PQ53 114 aa7.57□□□□□ -1.2
CUX1-202ENST00000292538 GAGE2BQ13066 116 aa7.57□□□□□ -1.2
CUX1-202ENST00000292538 PSCAO43653 123 aa7.56□□□□□ -1.2
CUX1-202ENST00000292538 TRAV23DV6A0A075B6W5 121 aa7.55□□□□□ -1.2
CUX1-202ENST00000292538 GVQW2A0A096LPI5 108 aaPredicted RBP7.55□□□□□ -1.2
CUX1-202ENST00000292538 SS18L2Q9UHA2 77 aa7.55□□□□□ -1.2
CUX1-202ENST00000292538 SMIM20Q8N5G0 67 aa7.55□□□□□ -1.2
CUX1-202ENST00000292538 RPL37AP8A6NKH3 93 aa7.54□□□□□ -1.2
CUX1-202ENST00000292538 hADV29S1A0JD25 119 aa7.54□□□□□ -1.2
CUX1-202ENST00000292538 FAM168BA1KXE4 195 aa7.54□□□□□ -1.2
CUX1-202ENST00000292538 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.53□□□□□ -1.2
CUX1-202ENST00000292538 IGLV6-57P01721 117 aa7.53□□□□□ -1.2
CUX1-202ENST00000292538 NKAPP1Q8N9T2 125 aa7.53□□□□□ -1.2
CUX1-202ENST00000292538 C2orf48Q96LS8 159 aa7.53□□□□□ -1.2
CUX1-202ENST00000292538 LAMTOR3Q9UHA4 124 aa7.53□□□□□ -1.2
CUX1-202ENST00000292538 ZNF73O43830 326 aaPredicted RBP7.53□□□□□ -1.2
CUX1-202ENST00000292538 VPREB1P12018 145 aa7.53□□□□□ -1.2
CUX1-202ENST00000292538 DIRC1Q969H9 104 aa7.53□□□□□ -1.2
CUX1-202ENST00000292538 Q6ZQY7 126 aa7.52□□□□□ -1.21
CUX1-202ENST00000292538 KRTAP1-5Q9BYS1 174 aa7.52□□□□□ -1.21
CUX1-202ENST00000292538 INAFM2P0DMQ5 153 aa7.52□□□□□ -1.21
CUX1-202ENST00000292538 SERTAD4-AS1Q5TG53 156 aa7.52□□□□□ -1.21
CUX1-202ENST00000292538 LINC00575Q6W349 94 aa7.52□□□□□ -1.21
CUX1-202ENST00000292538 LINC01600Q96MT4 127 aa7.51□□□□□ -1.21
CUX1-202ENST00000292538 IGKV2-24A0A0C4DH68 120 aa7.51□□□□□ -1.21
CUX1-202ENST00000292538 M0R2N4 97 aa7.51□□□□□ -1.21
CUX1-202ENST00000292538 RMI2Q96E14 147 aa7.51□□□□□ -1.21
CUX1-202ENST00000292538 FAM19A5Q7Z5A7 132 aaPredicted RBP7.5□□□□□ -1.21
CUX1-202ENST00000292538 M0R378 163 aa7.5□□□□□ -1.21
CUX1-202ENST00000292538 C4orf48Q5BLP8 95 aa7.5□□□□□ -1.21
CUX1-202ENST00000292538 SMCR5Q8TEV8 140 aa7.5□□□□□ -1.21
CUX1-202ENST00000292538 B9D2Q9BPU9 175 aa7.5□□□□□ -1.21
CUX1-202ENST00000292538 DNAH10Q8IVF4 4471 aa7.5□□□□□ -1.21
CUX1-202ENST00000292538 DNAH9Q9NYC9 4486 aa7.49□□□□□ -1.21
CUX1-202ENST00000292538 TMEM256-PLSCR3K7ERE1 68 aa7.49□□□□□ -1.21
CUX1-202ENST00000292538 COX7BP24311 80 aa7.49□□□□□ -1.21
CUX1-202ENST00000292538 DEFB105AQ8NG35 78 aa7.49□□□□□ -1.21
CUX1-202ENST00000292538 MUC7Q8TAX7 377 aa7.49□□□□□ -1.21
CUX1-202ENST00000292538 DNHD1Q96M86 4753 aa7.48□□□□□ -1.21
CUX1-202ENST00000292538 MEGF8Q7Z7M0 2845 aa7.47□□□□□ -1.21
CUX1-202ENST00000292538 DNAH7Q8WXX0 4024 aa7.47□□□□□ -1.21
CUX1-202ENST00000292538 C7orf33Q8WU49 177 aa7.46□□□□□ -1.21
CUX1-202ENST00000292538 APLNQ9ULZ1 77 aa7.46□□□□□ -1.21
CUX1-202ENST00000292538 IGKV3D-7A0A0C4DH55 119 aa7.45□□□□□ -1.22
CUX1-202ENST00000292538 FAM240AA0A1B0GVK7 77 aa7.45□□□□□ -1.22
CUX1-202ENST00000292538 LINC00846Q9NV44 126 aa7.45□□□□□ -1.22
CUX1-202ENST00000292538 PRKDCP78527 4128 aaKnown RBP7.45□□□□□ -1.22
CUX1-202ENST00000292538 UPK3BQ9BT76 320 aa7.45□□□□□ -1.22
CUX1-202ENST00000292538 TGP01266 2768 aa7.45□□□□□ -1.22
CUX1-202ENST00000292538 ACYP1P07311 99 aa7.44□□□□□ -1.22
CUX1-202ENST00000292538 ANAPC13Q9BS18 74 aa7.44□□□□□ -1.22
CUX1-202ENST00000292538 A0A1B0GX51 115 aa7.44□□□□□ -1.22
CUX1-202ENST00000292538 FUSP35637 526 aaKnown RBP eCLIP7.44□□□□□ -1.225e-7■■■■□ 23.7
CUX1-202ENST00000292538 SDIM1Q6ZPB5 146 aa7.44□□□□□ -1.22
CUX1-202ENST00000292538 RBM3P98179 157 aaKnown RBP7.43□□□□□ -1.22
CUX1-202ENST00000292538 DPH3Q96FX2 82 aa7.43□□□□□ -1.22
CUX1-202ENST00000292538 ELOF1P60002 83 aaKnown RBP7.43□□□□□ -1.22
CUX1-202ENST00000292538 JMJD7-PLA2G4BH0Y9G9 81 aa7.42□□□□□ -1.22
CUX1-202ENST00000292538 LINC00167Q96N53 147 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms