RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 PRR34Q9NV39 138 aa12.67□□□□□ -0.38
CPSF3-201ENST00000238112 SMIM20Q8N5G0 67 aa12.67□□□□□ -0.38
CPSF3-201ENST00000238112 hADV29S1A0JD25 119 aa12.65□□□□□ -0.38
CPSF3-201ENST00000238112 A0A087WVE0 104 aa12.65□□□□□ -0.39
CPSF3-201ENST00000238112 ENHOQ6UWT2 76 aa12.64□□□□□ -0.39
CPSF3-201ENST00000238112 C2orf48Q96LS8 159 aa12.64□□□□□ -0.39
CPSF3-201ENST00000238112 IGLV6-57P01721 117 aa12.62□□□□□ -0.39
CPSF3-201ENST00000238112 GVQW2A0A096LPI5 108 aaPredicted RBP12.61□□□□□ -0.39
CPSF3-201ENST00000238112 ATP5EP2Q5VTU8 51 aa12.61□□□□□ -0.39
CPSF3-201ENST00000238112 LYPD5Q6UWN5 251 aa12.61□□□□□ -0.39
CPSF3-201ENST00000238112 ZNF561-AS1K7EIQ3 104 aa12.6□□□□□ -0.39
CPSF3-201ENST00000238112 RBM3P98179 157 aaKnown RBP12.6□□□□□ -0.39
CPSF3-201ENST00000238112 LAMTOR3Q9UHA4 124 aa12.6□□□□□ -0.39
CPSF3-201ENST00000238112 USP17L23D6RBM5 183 aa12.59□□□□□ -0.39
CPSF3-201ENST00000238112 UBL5Q9BZL1 73 aa12.59□□□□□ -0.39
CPSF3-201ENST00000238112 C6orf48Q9UBA6 75 aa12.59□□□□□ -0.39
CPSF3-201ENST00000238112 CRYGAP11844 174 aa12.59□□□□□ -0.39
CPSF3-201ENST00000238112 NOTCH2Q04721 2471 aa12.58□□□□□ -0.4
CPSF3-201ENST00000238112 SERP2Q8N6R1 65 aa12.57□□□□□ -0.4
CPSF3-201ENST00000238112 XAGE1AQ9HD64 81 aa12.57□□□□□ -0.4
CPSF3-201ENST00000238112 TRAV23DV6A0A075B6W5 121 aa12.56□□□□□ -0.4
CPSF3-201ENST00000238112 TRBV10-3A0A0K0K1G6 114 aa12.56□□□□□ -0.4
CPSF3-201ENST00000238112 WFDC9Q8NEX5 89 aa12.56□□□□□ -0.4
CPSF3-201ENST00000238112 SVIPQ8NHG7 77 aa12.56□□□□□ -0.4
CPSF3-201ENST00000238112 TENM1Q9UKZ4 2725 aa12.56□□□□□ -0.4
CPSF3-201ENST00000238112 Q6ZQT0 140 aa12.55□□□□□ -0.4
CPSF3-201ENST00000238112 Q6ZQY7 126 aa12.55□□□□□ -0.4
CPSF3-201ENST00000238112 DIRC1Q969H9 104 aa12.55□□□□□ -0.4
CPSF3-201ENST00000238112 LOC110117498A0A087WWA1 95 aa12.54□□□□□ -0.4
CPSF3-201ENST00000238112 H3BQ85 93 aa12.54□□□□□ -0.4
CPSF3-201ENST00000238112 WIPF1O43516 503 aa12.53□□□□□ -0.4
CPSF3-201ENST00000238112 HIGD2BQ4VC39 106 aa12.53□□□□□ -0.4
CPSF3-201ENST00000238112 WFDC10BQ8IUB3 73 aa12.53□□□□□ -0.4
CPSF3-201ENST00000238112 CAMK2N2Q96S95 79 aa12.53□□□□□ -0.4
CPSF3-201ENST00000238112 DSCR8Q96T75 97 aa12.53□□□□□ -0.4
CPSF3-201ENST00000238112 NSD1Q96L73 2696 aaPredicted RBP12.52□□□□□ -0.41
CPSF3-201ENST00000238112 OTOGQ6ZRI0 2925 aa12.51□□□□□ -0.41
CPSF3-201ENST00000238112 HECTD1Q9ULT8 2610 aa12.51□□□□□ -0.41
CPSF3-201ENST00000238112 ZNF73O43830 326 aaPredicted RBP12.51□□□□□ -0.41
CPSF3-201ENST00000238112 KPRPQ5T749 579 aaPredicted RBP12.51□□□□□ -0.41
CPSF3-201ENST00000238112 FAM19A1Q7Z5A9 133 aa12.5□□□□□ -0.41
CPSF3-201ENST00000238112 KMT2BQ9UMN6 2715 aaPredicted RBP12.49□□□□□ -0.41
CPSF3-201ENST00000238112 H3BNG1 76 aa12.49□□□□□ -0.41
CPSF3-201ENST00000238112 COX7BP24311 80 aa12.49□□□□□ -0.41
CPSF3-201ENST00000238112 ATRQ13535 2644 aa12.48□□□□□ -0.41
CPSF3-201ENST00000238112 PDE6GP18545 87 aa12.48□□□□□ -0.41
CPSF3-201ENST00000238112 UPK3BQ9BT76 320 aa12.48□□□□□ -0.41
CPSF3-201ENST00000238112 RETNQ9HD89 108 aa12.48□□□□□ -0.41
CPSF3-201ENST00000238112 EGFEM1PQ0D2K5 195 aa12.47□□□□□ -0.41
CPSF3-201ENST00000238112 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.47□□□□□ -0.41
CPSF3-201ENST00000238112 GHRHP01286 108 aa12.46□□□□□ -0.41
CPSF3-201ENST00000238112 VPREB1P12018 145 aa12.46□□□□□ -0.41
CPSF3-201ENST00000238112 TRRAPQ9Y4A5 3859 aa12.46□□□□□ -0.42
CPSF3-201ENST00000238112 HIVEP1P15822 2718 aa12.46□□□□□ -0.42
CPSF3-201ENST00000238112 ELOF1P60002 83 aaKnown RBP12.45□□□□□ -0.42
CPSF3-201ENST00000238112 CYSTM1Q9H1C7 97 aa12.45□□□□□ -0.42
CPSF3-201ENST00000238112 TEP1Q99973 2627 aaKnown RBP12.45□□□□□ -0.42
CPSF3-201ENST00000238112 M0R2N4 97 aa12.45□□□□□ -0.42
CPSF3-201ENST00000238112 Q6ZRU5 148 aa12.45□□□□□ -0.42
CPSF3-201ENST00000238112 Q6ZTC4 211 aa12.45□□□□□ -0.42
CPSF3-201ENST00000238112 TRBV7-6A0A0J9YX20 115 aa12.44□□□□□ -0.42
CPSF3-201ENST00000238112 KRTAP26-1Q6PEX3 210 aa12.44□□□□□ -0.42
CPSF3-201ENST00000238112 M0R378 163 aa12.43□□□□□ -0.42
CPSF3-201ENST00000238112 OXLD1Q5BKU9 147 aa12.43□□□□□ -0.42
CPSF3-201ENST00000238112 C15orf56Q8N910 161 aa12.43□□□□□ -0.42
CPSF3-201ENST00000238112 NDUFC2-KCTD14E9PQ53 114 aa12.42□□□□□ -0.42
CPSF3-201ENST00000238112 HAMPP81172 84 aa12.42□□□□□ -0.42
CPSF3-201ENST00000238112 Q6ZVQ6 151 aa12.42□□□□□ -0.42
CPSF3-201ENST00000238112 LINC01547P58512 204 aaPredicted RBP12.42□□□□□ -0.42
CPSF3-201ENST00000238112 C1orf43Q9BWL3 253 aa12.41□□□□□ -0.42
CPSF3-201ENST00000238112 TMEM258P61165 79 aa12.4□□□□□ -0.42
CPSF3-201ENST00000238112 J3KT08 172 aa12.4□□□□□ -0.42
CPSF3-201ENST00000238112 ESRGQ1W209 222 aa12.4□□□□□ -0.42
CPSF3-201ENST00000238112 TRBV7-4A0A0J9YYF1 115 aa12.38□□□□□ -0.43
CPSF3-201ENST00000238112 KRTAP10-11P60412 298 aa12.38□□□□□ -0.43
CPSF3-201ENST00000238112 IGKV2D-24A0A075B6R9 120 aa12.37□□□□□ -0.43
CPSF3-201ENST00000238112 LOC107984640A0A0U1RRK4 108 aa12.36□□□□□ -0.43
CPSF3-201ENST00000238112 CXCL6P80162 114 aa12.36□□□□□ -0.43
CPSF3-201ENST00000238112 LINC01556Q5JQF7 62 aa12.35□□□□□ -0.43
CPSF3-201ENST00000238112 Q6ZRP5 223 aa12.35□□□□□ -0.43
CPSF3-201ENST00000238112 LINC00528Q8N1L1 170 aa12.35□□□□□ -0.43
CPSF3-201ENST00000238112 F8WDY8 70 aa12.33□□□□□ -0.44
CPSF3-201ENST00000238112 DEFB131BA0A096LNP1 70 aa12.33□□□□□ -0.44
CPSF3-201ENST00000238112 SYCNQ0VAF6 134 aa12.33□□□□□ -0.44
CPSF3-201ENST00000238112 RPS28P62857 69 aaKnown RBP12.32□□□□□ -0.44
CPSF3-201ENST00000238112 BCE1O60756 84 aa12.32□□□□□ -0.44
CPSF3-201ENST00000238112 C20orf197Q8N268 126 aa12.3□□□□□ -0.44
CPSF3-201ENST00000238112 NKAPP1Q8N9T2 125 aa12.29□□□□□ -0.44
CPSF3-201ENST00000238112 C11orf45Q8TAV5 145 aa12.29□□□□□ -0.44
CPSF3-201ENST00000238112 DPH3Q96FX2 82 aa12.29□□□□□ -0.44
CPSF3-201ENST00000238112 TRAV7A0A075B6U4 112 aa12.28□□□□□ -0.44
CPSF3-201ENST00000238112 SCXQ7RTU7 201 aa12.27□□□□□ -0.45
CPSF3-201ENST00000238112 TRAV10A0A0B4J240 114 aa12.26□□□□□ -0.45
CPSF3-201ENST00000238112 KCNQ1DNQ9H478 68 aa12.25□□□□□ -0.45
CPSF3-201ENST00000238112 FAM19A5Q7Z5A7 132 aaPredicted RBP12.24□□□□□ -0.45
CPSF3-201ENST00000238112 DNAH10OSP0CZ25 163 aa12.23□□□□□ -0.45
CPSF3-201ENST00000238112 SERTAD4-AS1Q5TG53 156 aa12.23□□□□□ -0.45
CPSF3-201ENST00000238112 C7orf33Q8WU49 177 aa12.23□□□□□ -0.45
CPSF3-201ENST00000238112 PKD1L1Q8TDX9 2849 aa12.23□□□□□ -0.45
CPSF3-201ENST00000238112 DEFB105AQ8NG35 78 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 160.7 ms