RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 KRTAP6-3Q3LI67 103 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 OCIAD2Q56VL3 154 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 SDIM1Q6ZPB5 146 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 C2orf91Q6ZV80 131 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 GPHB5Q86YW7 130 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 C10orf105Q8TEF2 133 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 TOMM6Q96B49 74 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 AGPAT4-IT1Q9H0P7 198 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 CST9LQ9H4G1 147 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 SPCS1Q9Y6A9 102 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 MGAQ8IWI9 3026 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 MYO15AQ9UKN7 3530 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 ABCA2Q9BZC7 2435 aa2.07□□□□□ -2.08
LINC00560-201ENST00000564593 TRBV20-1A0A075B6N2 111 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 MYMXA0A1B0GTQ4 84 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 CLPSL1A2RUU4 121 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 F8W1H4 67 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 H3BUX3 64 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 ACACBO00763 2458 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 CCL25O15444 150 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 LY6HO94772 140 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 APOMO95445 188 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 SCGB1A1P11684 91 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 WDFY4Q6ZS81 3184 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 ABCA12Q86UK0 2595 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 WDFY3Q8IZQ1 3526 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 DMXL1Q9Y485 3027 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 NCOR2Q9Y618 2525 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 USP34Q70CQ2 3546 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 BOD1L1Q8NFC6 3051 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 ITPR3Q14573 2671 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 TRBV25-1A0A075B6N4 114 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.06□□□□□ -2.08
LINC00560-201ENST00000564593 TRAV26-2A0A0B4J265 109 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 TRBV6-5A0A0K0K1A5 114 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 G3V318 75 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 H3BUT2 72 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 CD7P09564 240 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 COX6B1P14854 86 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 RNASE4P34096 147 aaKnown RBP2.06□□□□□ -2.08
LINC00560-201ENST00000564593 ZNF80P51504 273 aaPredicted RBP2.06□□□□□ -2.08
LINC00560-201ENST00000564593 PRB3Q04118 309 aaPredicted RBP2.06□□□□□ -2.08
LINC00560-201ENST00000564593 ZNF56Q15929 161 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 KRTAP21-3Q3LHN1 58 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 FOXI2Q6ZQN5 318 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 PLEKHB2Q96CS7 222 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 RHPN1-AS1Q9BWJ2 59 aa2.06□□□□□ -2.08
LINC00560-201ENST00000564593 NHP2Q9NX24 153 aaKnown RBP2.06□□□□□ -2.08
LINC00560-201ENST00000564593 MRPL35Q9NZE8 188 aaKnown RBP2.06□□□□□ -2.08
LINC00560-201ENST00000564593 MED13LQ71F56 2210 aa2.05□□□□□ -2.08
LINC00560-201ENST00000564593 HRNRQ86YZ3 2850 aaPredicted RBP2.05□□□□□ -2.08
LINC00560-201ENST00000564593 TRBV27A0A0K0K1C4 114 aa2.05□□□□□ -2.08
LINC00560-201ENST00000564593 C11orf86A6NJI1 115 aa2.05□□□□□ -2.08
LINC00560-201ENST00000564593 ZNF815PA8K554 130 aa2.05□□□□□ -2.08
LINC00560-201ENST00000564593 A8MWV9 139 aa2.05□□□□□ -2.08
LINC00560-201ENST00000564593 LGALS1P09382 135 aaKnown RBP2.05□□□□□ -2.08
LINC00560-201ENST00000564593 RRN3P1Q2M238 152 aa2.05□□□□□ -2.08
LINC00560-201ENST00000564593 OR13C6PQ8NH95 151 aa2.05□□□□□ -2.08
LINC00560-201ENST00000564593 ATP6V0E2Q8NHE4 81 aa2.05□□□□□ -2.08
LINC00560-201ENST00000564593 DYNLRB2Q8TF09 96 aa2.05□□□□□ -2.08
LINC00560-201ENST00000564593 DNAJC30Q96LL9 226 aa2.05□□□□□ -2.08
LINC00560-201ENST00000564593 SPANXA1Q9NS26 97 aa2.05□□□□□ -2.08
LINC00560-201ENST00000564593 TP73-AS1Q9UF72 201 aa2.05□□□□□ -2.08
LINC00560-201ENST00000564593 HHLA3Q9XRX5 114 aa2.05□□□□□ -2.08
LINC00560-201ENST00000564593 DCHS1Q96JQ0 3298 aa2.05□□□□□ -2.08
LINC00560-201ENST00000564593 MYO9AB2RTY4 2548 aa2.04□□□□□ -2.08
LINC00560-201ENST00000564593 A0A0J9YX75 114 aa2.04□□□□□ -2.08
LINC00560-201ENST00000564593 KNCNA6PVL3 124 aa2.04□□□□□ -2.08
LINC00560-201ENST00000564593 TMEM262E9PQX1 116 aa2.04□□□□□ -2.08
LINC00560-201ENST00000564593 I3L3M4 83 aa2.04□□□□□ -2.08
LINC00560-201ENST00000564593 COX6CP09669 75 aa2.04□□□□□ -2.08
LINC00560-201ENST00000564593 PSMB8P28062 276 aa2.04□□□□□ -2.08
LINC00560-201ENST00000564593 HLA-DMBP28068 263 aa2.04□□□□□ -2.08
LINC00560-201ENST00000564593 CIRBPQ14011 172 aaKnown RBP2.04□□□□□ -2.08
LINC00560-201ENST00000564593 FAM229BQ4G0N7 80 aa2.04□□□□□ -2.08
LINC00560-201ENST00000564593 SFTA2Q6UW10 78 aa2.04□□□□□ -2.08
LINC00560-201ENST00000564593 RAB37Q96AX2 223 aa2.04□□□□□ -2.08
LINC00560-201ENST00000564593 PRADC1Q9BSG0 188 aa2.04□□□□□ -2.08
LINC00560-201ENST00000564593 SPANXDQ9BXN6 97 aa2.04□□□□□ -2.08
LINC00560-201ENST00000564593 LOC400499M0QZD8 3231 aa2.04□□□□□ -2.08
LINC00560-201ENST00000564593 CSPG4Q6UVK1 2322 aa2.04□□□□□ -2.08
LINC00560-201ENST00000564593 ADGRG4Q8IZF6 3080 aa2.04□□□□□ -2.08
LINC00560-201ENST00000564593 MUC4Q99102 2169 aa2.04□□□□□ -2.08
LINC00560-201ENST00000564593 ATMQ13315 3056 aa2.03□□□□□ -2.08
LINC00560-201ENST00000564593 CELSR3Q9NYQ7 3312 aa2.03□□□□□ -2.08
LINC00560-201ENST00000564593 TACC2O95359 2948 aa2.03□□□□□ -2.08
LINC00560-201ENST00000564593 LRBAP50851 2863 aa2.03□□□□□ -2.08
LINC00560-201ENST00000564593 H3BMG7 143 aa2.03□□□□□ -2.08
LINC00560-201ENST00000564593 J3QQQ9 107 aa2.03□□□□□ -2.08
LINC00560-201ENST00000564593 M0R2P5 195 aa2.03□□□□□ -2.08
LINC00560-201ENST00000564593 LEPROTO15243 131 aa2.03□□□□□ -2.08
LINC00560-201ENST00000564593 IGHV3-30-3P0DP02 117 aa2.03□□□□□ -2.08
LINC00560-201ENST00000564593 RNASE3P12724 160 aaKnown RBP2.03□□□□□ -2.08
LINC00560-201ENST00000564593 KRTAP12-3P60328 96 aa2.03□□□□□ -2.08
LINC00560-201ENST00000564593 C12orf74Q32Q52 190 aa2.03□□□□□ -2.08
LINC00560-201ENST00000564593 TMEM170BQ5T4T1 132 aa2.03□□□□□ -2.08
LINC00560-201ENST00000564593 FAM74A4Q5TZK3 123 aa2.03□□□□□ -2.08
LINC00560-201ENST00000564593 DCANP1Q8TF63 244 aa2.03□□□□□ -2.08
LINC00560-201ENST00000564593 C4orf3Q8WVX3 66 aa2.03□□□□□ -2.08
LINC00560-201ENST00000564593 LINC00467Q9BRT7 94 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms