RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 COL6A5A8TX70 2615 aa3.26□□□□□ -1.89
VPS35P1-201ENST00000563400 Q6ZQT7 251 aa3.26□□□□□ -1.89
VPS35P1-201ENST00000563400 SEC11CQ9BY50 192 aa3.26□□□□□ -1.89
VPS35P1-201ENST00000563400 MXRA5Q9NR99 2828 aa3.25□□□□□ -1.89
VPS35P1-201ENST00000563400 C16orf90A8MZG2 172 aa3.25□□□□□ -1.89
VPS35P1-201ENST00000563400 TIMM17BO60830 172 aa3.25□□□□□ -1.89
VPS35P1-201ENST00000563400 TCL1BO95988 128 aa3.25□□□□□ -1.89
VPS35P1-201ENST00000563400 IGLV7-43P04211 117 aa3.25□□□□□ -1.89
VPS35P1-201ENST00000563400 MIFP14174 115 aa3.25□□□□□ -1.89
VPS35P1-201ENST00000563400 PEA15Q15121 130 aa3.25□□□□□ -1.89
VPS35P1-201ENST00000563400 RPL7L1Q6DKI1 246 aaKnown RBP3.25□□□□□ -1.89
VPS35P1-201ENST00000563400 VPS13CQ709C8 3753 aa3.25□□□□□ -1.89
VPS35P1-201ENST00000563400 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 TRAV1-1A0A0B4J248 108 aa3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 FUSP35637 526 aaKnown RBP eCLIP3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 LYZL1Q6UWQ5 148 aa3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 Q6ZUT4 128 aa3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 FAM213BQ8TBF2 198 aa3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 CHCHD1Q96BP2 118 aaKnown RBP3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 SCRT1Q9BWW7 348 aa3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 KRTAP2-2Q9BYT5 123 aa3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 SLC35B3Q9H1N7 401 aa3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 ZNF469Q96JG9 3925 aaPredicted RBP3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 SORL1Q92673 2214 aa3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 TRAV12-2A0A075B6T6 113 aa3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 IGHV3OR16-8A0A075B7F1 116 aa3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 TRAV21A0A0B4J279 112 aa3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 IGHV3-53P01767 116 aa3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 ZNF705BP0CI00 300 aaPredicted RBP3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 SPART-AS1P0CW21 52 aa3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 FABP4P15090 132 aa3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 GCHFRP30047 84 aa3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 DEFA5Q01523 94 aa3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 SS18Q15532 418 aa3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 MRPL54Q6P161 138 aaKnown RBP3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 RETNLBQ9BQ08 111 aa3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 GFRA4Q9GZZ7 299 aa3.24□□□□□ -1.89
VPS35P1-201ENST00000563400 ZFHX3Q15911 3703 aa3.23□□□□□ -1.89
VPS35P1-201ENST00000563400 AKAP9Q99996 3911 aa3.23□□□□□ -1.89
VPS35P1-201ENST00000563400 TRBV20-1A0A075B6N2 111 aa3.23□□□□□ -1.89
VPS35P1-201ENST00000563400 A0A0J9YX75 114 aa3.23□□□□□ -1.89
VPS35P1-201ENST00000563400 C11orf86A6NJI1 115 aa3.23□□□□□ -1.89
VPS35P1-201ENST00000563400 SPINK8P0C7L1 97 aa3.23□□□□□ -1.89
VPS35P1-201ENST00000563400 ARL14EPLP0DKL9 152 aa3.23□□□□□ -1.89
VPS35P1-201ENST00000563400 IGLC2P0DOY2 106 aa3.23□□□□□ -1.89
VPS35P1-201ENST00000563400 CLEC2BQ92478 149 aa3.23□□□□□ -1.89
VPS35P1-201ENST00000563400 AGPAT4-IT1Q9H0P7 198 aa3.23□□□□□ -1.89
VPS35P1-201ENST00000563400 MRPL36Q9P0J6 103 aaKnown RBP3.23□□□□□ -1.89
VPS35P1-201ENST00000563400 WNK1Q9H4A3 2382 aa3.23□□□□□ -1.89
VPS35P1-201ENST00000563400 TRAV7A0A075B6U4 112 aa3.22□□□□□ -1.89
VPS35P1-201ENST00000563400 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.22□□□□□ -1.89
VPS35P1-201ENST00000563400 SH2D6Q7Z4S9 175 aa3.22□□□□□ -1.89
VPS35P1-201ENST00000563400 ST20-AS1Q8NBB2 130 aa3.22□□□□□ -1.89
VPS35P1-201ENST00000563400 GNG13Q9P2W3 67 aa3.22□□□□□ -1.89
VPS35P1-201ENST00000563400 TIMM8BQ9Y5J9 83 aaPredicted RBP3.22□□□□□ -1.89
VPS35P1-201ENST00000563400 NACAE9PAV3 2078 aa3.21□□□□□ -1.9
VPS35P1-201ENST00000563400 TRBV6-1A0A0K0K1D8 114 aa3.21□□□□□ -1.9
VPS35P1-201ENST00000563400 NUPR2A6NF83 97 aa3.21□□□□□ -1.9
VPS35P1-201ENST00000563400 H3BPC8 53 aa3.21□□□□□ -1.9
VPS35P1-201ENST00000563400 IGKV3-20P01619 116 aa3.21□□□□□ -1.9
VPS35P1-201ENST00000563400 CIRBPQ14011 172 aaKnown RBP3.21□□□□□ -1.9
VPS35P1-201ENST00000563400 Q6AWC8 147 aa3.21□□□□□ -1.9
VPS35P1-201ENST00000563400 BAGE2Q86Y30 109 aa3.21□□□□□ -1.9
VPS35P1-201ENST00000563400 ATOH7Q8N100 152 aa3.21□□□□□ -1.9
VPS35P1-201ENST00000563400 Q8NAQ8 132 aa3.21□□□□□ -1.9
VPS35P1-201ENST00000563400 MED9Q9NWA0 146 aa3.21□□□□□ -1.9
VPS35P1-201ENST00000563400 IGLV4-69A0A075B6H9 119 aa3.2□□□□□ -1.9
VPS35P1-201ENST00000563400 F2Z2F3 143 aa3.2□□□□□ -1.9
VPS35P1-201ENST00000563400 K7EIL1 84 aa3.2□□□□□ -1.9
VPS35P1-201ENST00000563400 MRPS36P82909 103 aaKnown RBP3.2□□□□□ -1.9
VPS35P1-201ENST00000563400 Q5BKY6 102 aa3.2□□□□□ -1.9
VPS35P1-201ENST00000563400 C9orf153Q5TBE3 101 aa3.2□□□□□ -1.9
VPS35P1-201ENST00000563400 TMEM263Q8WUH6 116 aaKnown RBP3.2□□□□□ -1.9
VPS35P1-201ENST00000563400 LINC00467Q9BRT7 94 aa3.2□□□□□ -1.9
VPS35P1-201ENST00000563400 CYTL1Q9NRR1 136 aa3.2□□□□□ -1.9
VPS35P1-201ENST00000563400 LY96Q9Y6Y9 160 aa3.2□□□□□ -1.9
VPS35P1-201ENST00000563400 NOTCH3Q9UM47 2321 aa3.2□□□□□ -1.9
VPS35P1-201ENST00000563400 TRAV10A0A0B4J240 114 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 H3BQ15 152 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 H7C2G1 150 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 PPP1R17O96001 155 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 IFITM1P13164 125 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 HTN1P15515 57 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 LINC00322Q6ZN03 302 aaPredicted RBP3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 C15orf53Q8NAA6 179 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 FAM167A-AS1Q96KT0 104 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 STAB1Q9NY15 2570 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 TRGV2A0A075B6R0 118 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 IGKV2D-26A0A0A0MRZ7 120 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 TRBV10-2A0A0K0K1G8 114 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 GNRH2O43555 120 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 TRACP01848 142 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 ASIPP42127 132 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 SPINK13Q1W4C9 94 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 DEFB135Q30KP9 77 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 ALKAL2Q6UX46 152 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 Q6ZQT0 140 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 Q6ZR54 194 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 SBSPONQ8IVN8 264 aa3.19□□□□□ -1.9
VPS35P1-201ENST00000563400 TP53TG3Q9ULZ0 132 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms