RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 FAM19A3Q7Z5A8 133 aa10.47□□□□□ -0.73
TSPAN3-208ENST00000560514 PACRGQ96M98 296 aaPredicted RBP10.47□□□□□ -0.73
TSPAN3-208ENST00000560514 NXT2Q9NPJ8 142 aaKnown RBP10.47□□□□□ -0.73
TSPAN3-208ENST00000560514 A0A087X002 238 aa10.46□□□□□ -0.73
TSPAN3-208ENST00000560514 NDUFC2-KCTD14E9PQ53 114 aa10.46□□□□□ -0.73
TSPAN3-208ENST00000560514 PAPPA-AS1Q5QFB9 102 aa10.46□□□□□ -0.73
TSPAN3-208ENST00000560514 RETNLBQ9BQ08 111 aa10.46□□□□□ -0.73
TSPAN3-208ENST00000560514 IGIPA6NJ69 53 aa10.45□□□□□ -0.74
TSPAN3-208ENST00000560514 RPL28P46779 137 aaKnown RBP10.45□□□□□ -0.74
TSPAN3-208ENST00000560514 CTDSP1Q9GZU7 261 aa10.45□□□□□ -0.74
TSPAN3-208ENST00000560514 SEC11AP67812 179 aa10.44□□□□□ -0.74
TSPAN3-208ENST00000560514 LBHQ53QV2 105 aaPredicted RBP10.44□□□□□ -0.74
TSPAN3-208ENST00000560514 C9orf129Q5T035 196 aaKnown RBP10.44□□□□□ -0.74
TSPAN3-208ENST00000560514 TPRXLQ17RH7 258 aa10.43□□□□□ -0.74
TSPAN3-208ENST00000560514 CLLU1Q5K131 121 aa10.43□□□□□ -0.74
TSPAN3-208ENST00000560514 LINC00173Q6ZV60 143 aa10.42□□□□□ -0.74
TSPAN3-208ENST00000560514 IGLV7-46A0A075B6I9 117 aa10.41□□□□□ -0.74
TSPAN3-208ENST00000560514 TRAV9-1A0A075B6T8 112 aa10.41□□□□□ -0.74
TSPAN3-208ENST00000560514 PRSS2P07478 247 aa10.41□□□□□ -0.74
TSPAN3-208ENST00000560514 HERVK_113P63121 156 aa10.41□□□□□ -0.74
TSPAN3-208ENST00000560514 C6orf226Q5I0X4 101 aa10.41□□□□□ -0.74
TSPAN3-208ENST00000560514 C2orf82Q6UX34 121 aa10.41□□□□□ -0.74
TSPAN3-208ENST00000560514 TIMM17AQ99595 171 aa10.41□□□□□ -0.74
TSPAN3-208ENST00000560514 C22orf24Q9Y442 160 aa10.41□□□□□ -0.74
TSPAN3-208ENST00000560514 MUC17Q685J3 4493 aa10.41□□□□□ -0.74
TSPAN3-208ENST00000560514 FSIP2Q5CZC0 6907 aa10.4□□□□□ -0.74
TSPAN3-208ENST00000560514 LINC01549A6NIU2 74 aa10.4□□□□□ -0.74
TSPAN3-208ENST00000560514 UQCC3Q6UW78 93 aa10.4□□□□□ -0.74
TSPAN3-208ENST00000560514 Q8IZM0 81 aa10.4□□□□□ -0.74
TSPAN3-208ENST00000560514 CKS1BP61024 79 aa10.39□□□□□ -0.75
TSPAN3-208ENST00000560514 TOMM6Q96B49 74 aa10.39□□□□□ -0.75
TSPAN3-208ENST00000560514 BCE1O60756 84 aa10.38□□□□□ -0.75
TSPAN3-208ENST00000560514 LINC01547P58512 204 aaPredicted RBP10.38□□□□□ -0.75
TSPAN3-208ENST00000560514 ZC2HC1BQ5TFG8 222 aa10.38□□□□□ -0.75
TSPAN3-208ENST00000560514 LINC00304Q8N9R0 145 aa10.38□□□□□ -0.75
TSPAN3-208ENST00000560514 ERASQ7Z444 233 aa10.37□□□□□ -0.75
TSPAN3-208ENST00000560514 LINC00469Q8N7U9 141 aa10.37□□□□□ -0.75
TSPAN3-208ENST00000560514 ALKBH7Q9BT30 221 aaPredicted RBP10.37□□□□□ -0.75
TSPAN3-208ENST00000560514 CRCT1Q9UGL9 99 aa10.37□□□□□ -0.75
TSPAN3-208ENST00000560514 TMEM218A2RU14 115 aa10.36□□□□□ -0.75
TSPAN3-208ENST00000560514 GEMIN7Q9H840 131 aaKnown RBP10.36□□□□□ -0.75
TSPAN3-208ENST00000560514 CDKN2A-AS1Q9UH64 79 aa10.36□□□□□ -0.75
TSPAN3-208ENST00000560514 GNB1LQ9BYB4 327 aa10.35□□□□□ -0.75
TSPAN3-208ENST00000560514 ANAPC11Q9NYG5 84 aa10.35□□□□□ -0.75
TSPAN3-208ENST00000560514 TOMM7Q9P0U1 55 aa10.35□□□□□ -0.75
TSPAN3-208ENST00000560514 LINC01546A6NGU7 62 aa10.34□□□□□ -0.75
TSPAN3-208ENST00000560514 F8VRH5 84 aa10.34□□□□□ -0.75
TSPAN3-208ENST00000560514 CXCL5P42830 114 aa10.34□□□□□ -0.75
TSPAN3-208ENST00000560514 COX19Q49B96 90 aa10.34□□□□□ -0.75
TSPAN3-208ENST00000560514 MRPL55Q7Z7F7 128 aaKnown RBP10.34□□□□□ -0.75
TSPAN3-208ENST00000560514 XAGE1AQ9HD64 81 aa10.34□□□□□ -0.75
TSPAN3-208ENST00000560514 KIAA1644Q3SXP7 199 aa10.33□□□□□ -0.76
TSPAN3-208ENST00000560514 SCGB3A1Q96QR1 104 aa10.33□□□□□ -0.76
TSPAN3-208ENST00000560514 SEC11CQ9BY50 192 aa10.33□□□□□ -0.76
TSPAN3-208ENST00000560514 TP73-AS1Q9UF72 201 aa10.33□□□□□ -0.76
TSPAN3-208ENST00000560514 IGKV2D-26A0A0A0MRZ7 120 aa10.32□□□□□ -0.76
TSPAN3-208ENST00000560514 TINCRA0A1B0GVN0 87 aa10.32□□□□□ -0.76
TSPAN3-208ENST00000560514 S100PP25815 95 aa10.32□□□□□ -0.76
TSPAN3-208ENST00000560514 KRTAP13-2Q52LG2 175 aa10.32□□□□□ -0.76
TSPAN3-208ENST00000560514 ADCYAP1P18509 176 aa10.31□□□□□ -0.76
TSPAN3-208ENST00000560514 PDZD11Q5EBL8 140 aa10.31□□□□□ -0.76
TSPAN3-208ENST00000560514 PPDPFQ9H3Y8 114 aa10.31□□□□□ -0.76
TSPAN3-208ENST00000560514 UBE2AP49459 152 aa10.3□□□□□ -0.76
TSPAN3-208ENST00000560514 FAM229BQ4G0N7 80 aa10.3□□□□□ -0.76
TSPAN3-208ENST00000560514 IGLV5-45A0A087WSX0 123 aa10.29□□□□□ -0.76
TSPAN3-208ENST00000560514 RPL37AP8A6NKH3 93 aa10.29□□□□□ -0.76
TSPAN3-208ENST00000560514 CTAG1AP78358 180 aa10.29□□□□□ -0.76
TSPAN3-208ENST00000560514 CST9LQ9H4G1 147 aa10.29□□□□□ -0.76
TSPAN3-208ENST00000560514 LINC00337Q8N6G1 96 aa10.28□□□□□ -0.76
TSPAN3-208ENST00000560514 MRPL18Q9H0U6 180 aaKnown RBP10.28□□□□□ -0.76
TSPAN3-208ENST00000560514 SMIM1B2RUZ4 78 aa10.27□□□□□ -0.77
TSPAN3-208ENST00000560514 IFITM2Q01629 132 aa10.26□□□□□ -0.77
TSPAN3-208ENST00000560514 PMVKQ15126 192 aa10.26□□□□□ -0.77
TSPAN3-208ENST00000560514 COX7B2Q8TF08 81 aa10.26□□□□□ -0.77
TSPAN3-208ENST00000560514 LINC00167Q96N53 147 aa10.26□□□□□ -0.77
TSPAN3-208ENST00000560514 FABP9Q0Z7S8 132 aa10.24□□□□□ -0.77
TSPAN3-208ENST00000560514 C10orf91Q5T1B1 145 aa10.24□□□□□ -0.77
TSPAN3-208ENST00000560514 FA2HQ7L5A8 372 aa10.24□□□□□ -0.77
TSPAN3-208ENST00000560514 GAGE10A6NGK3 116 aa10.23□□□□□ -0.77
TSPAN3-208ENST00000560514 SMCO4Q9NRQ5 59 aa10.23□□□□□ -0.77
TSPAN3-208ENST00000560514 H3BRM9 83 aa10.22□□□□□ -0.77
TSPAN3-208ENST00000560514 RHEBQ15382 184 aa10.22□□□□□ -0.77
TSPAN3-208ENST00000560514 NKAPP1Q8N9T2 125 aa10.21□□□□□ -0.77
TSPAN3-208ENST00000560514 IGLV5-37A0A075B6J1 123 aa10.2□□□□□ -0.78
TSPAN3-208ENST00000560514 KRTAP13-1Q8IUC0 172 aa10.2□□□□□ -0.78
TSPAN3-208ENST00000560514 ASB16-AS1Q495Z4 193 aa10.19□□□□□ -0.78
TSPAN3-208ENST00000560514 FP248Q71RG6 208 aaPredicted RBP10.19□□□□□ -0.78
TSPAN3-208ENST00000560514 ATP5LO75964 103 aa10.18□□□□□ -0.78
TSPAN3-208ENST00000560514 SPINK8P0C7L1 97 aa10.18□□□□□ -0.78
TSPAN3-208ENST00000560514 LINC00614P0C842 121 aa10.18□□□□□ -0.78
TSPAN3-208ENST00000560514 IGLC3P0DOY3 106 aa10.18□□□□□ -0.78
TSPAN3-208ENST00000560514 SPAG11AQ6PDA7 123 aa10.18□□□□□ -0.78
TSPAN3-208ENST00000560514 COMMD7Q86VX2 200 aa10.18□□□□□ -0.78
TSPAN3-208ENST00000560514 RPS10P5Q9NQ39 176 aa10.18□□□□□ -0.78
TSPAN3-208ENST00000560514 IGLV5-39A0A0G2JS06 123 aa10.17□□□□□ -0.78
TSPAN3-208ENST00000560514 SEC61BP60468 96 aaKnown RBP10.17□□□□□ -0.78
TSPAN3-208ENST00000560514 RAB5BP61020 215 aa10.17□□□□□ -0.78
TSPAN3-208ENST00000560514 C4orf48Q5BLP8 95 aa10.16□□□□□ -0.78
TSPAN3-208ENST00000560514 COX17Q14061 63 aa10.15□□□□□ -0.78
TSPAN3-208ENST00000560514 TRAPPC1Q9Y5R8 145 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms