RNA–Protein interactions for RNA: ENST00000506368.5

SCLT1-208, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-208ENST00000506368 OXTP01178 125 aa11.24□□□□□ -0.61
SCLT1-208ENST00000506368 MSMBP08118 114 aa11.24□□□□□ -0.61
SCLT1-208ENST00000506368 SMR3AQ99954 134 aa11.24□□□□□ -0.61
SCLT1-208ENST00000506368 FHL2Q14192 279 aa11.23□□□□□ -0.61
SCLT1-208ENST00000506368 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.22□□□□□ -0.612e-8■■■■□ 24.1
SCLT1-208ENST00000506368 EPM2AB3EWF7 344 aa11.22□□□□□ -0.61
SCLT1-208ENST00000506368 UBL5Q9BZL1 73 aa11.22□□□□□ -0.61
SCLT1-208ENST00000506368 FAM236DA0A1B0GTK5 79 aa11.21□□□□□ -0.61
SCLT1-208ENST00000506368 FAM236CP0DP71 79 aa11.21□□□□□ -0.61
SCLT1-208ENST00000506368 MAP6D1Q9H9H5 199 aa11.21□□□□□ -0.61
SCLT1-208ENST00000506368 SERP1Q9Y6X1 66 aa11.21□□□□□ -0.61
SCLT1-208ENST00000506368 SS18Q15532 418 aa11.21□□□□□ -0.62
SCLT1-208ENST00000506368 F8P00451 2351 aa11.2□□□□□ -0.62
SCLT1-208ENST00000506368 C11orf44Q8N8P7 122 aa11.2□□□□□ -0.62
SCLT1-208ENST00000506368 ANK3Q12955 4377 aaKnown RBP11.2□□□□□ -0.62
SCLT1-208ENST00000506368 PAX4O43316 350 aa11.2□□□□□ -0.62
SCLT1-208ENST00000506368 C4orf26Q17RF5 130 aa11.2□□□□□ -0.62
SCLT1-208ENST00000506368 IGHV4-31P0DP07 118 aa11.19□□□□□ -0.62
SCLT1-208ENST00000506368 TMEM86BQ8N661 226 aa11.19□□□□□ -0.62
SCLT1-208ENST00000506368 CUBNO60494 3623 aa11.19□□□□□ -0.62
SCLT1-208ENST00000506368 A0A087WZ39 114 aa11.18□□□□□ -0.62
SCLT1-208ENST00000506368 TRGV1A0A0A0MS02 117 aa11.18□□□□□ -0.62
SCLT1-208ENST00000506368 PRM2P04554 102 aa11.18□□□□□ -0.62
SCLT1-208ENST00000506368 SONP18583 2426 aaKnown RBP11.18□□□□□ -0.62
SCLT1-208ENST00000506368 TRAV7A0A075B6U4 112 aa11.18□□□□□ -0.62
SCLT1-208ENST00000506368 IGHV3OR16-9A0A0B4J2B5 98 aa11.18□□□□□ -0.62
SCLT1-208ENST00000506368 B4DSR2 109 aa11.18□□□□□ -0.62
SCLT1-208ENST00000506368 KRTAP1-1Q07627 177 aa11.18□□□□□ -0.62
SCLT1-208ENST00000506368 HRCT1Q6UXD1 115 aa11.18□□□□□ -0.62
SCLT1-208ENST00000506368 TEP1Q99973 2627 aaKnown RBP11.18□□□□□ -0.62
SCLT1-208ENST00000506368 TOMM7Q9P0U1 55 aa11.18□□□□□ -0.62
SCLT1-208ENST00000506368 XCL1P47992 114 aa11.17□□□□□ -0.62
SCLT1-208ENST00000506368 C10orf99Q6UWK7 81 aa11.17□□□□□ -0.62
SCLT1-208ENST00000506368 XCL2Q9UBD3 114 aa11.17□□□□□ -0.62
SCLT1-208ENST00000506368 Q8N814 137 aa11.16□□□□□ -0.62
SCLT1-208ENST00000506368 IGHV4-59P01825 116 aa11.16□□□□□ -0.62
SCLT1-208ENST00000506368 H3BQ85 93 aa11.15□□□□□ -0.63
SCLT1-208ENST00000506368 KLKP1Q107X0 134 aa11.15□□□□□ -0.63
SCLT1-208ENST00000506368 LINC01356Q8N9X3 169 aa11.15□□□□□ -0.63
SCLT1-208ENST00000506368 MXRA5Q9NR99 2828 aa11.15□□□□□ -0.63
SCLT1-208ENST00000506368 TRAV23DV6A0A075B6W5 121 aa11.14□□□□□ -0.63
SCLT1-208ENST00000506368 DYNLRB2Q8TF09 96 aa11.14□□□□□ -0.63
SCLT1-208ENST00000506368 PFN2P35080 140 aa11.13□□□□□ -0.63
SCLT1-208ENST00000506368 ENHOQ6UWT2 76 aa11.13□□□□□ -0.63
SCLT1-208ENST00000506368 C20orf197Q8N268 126 aa11.13□□□□□ -0.63
SCLT1-208ENST00000506368 AVPP01185 164 aa11.13□□□□□ -0.63
SCLT1-208ENST00000506368 SLPIP03973 132 aa11.13□□□□□ -0.63
SCLT1-208ENST00000506368 HILS1P60008 231 aa11.13□□□□□ -0.63
SCLT1-208ENST00000506368 DEFB112Q30KQ8 113 aa11.13□□□□□ -0.63
SCLT1-208ENST00000506368 PRO0628Q9UI54 55 aa11.13□□□□□ -0.63
SCLT1-208ENST00000506368 NDUFC1O43677 76 aa11.12□□□□□ -0.63
SCLT1-208ENST00000506368 C1orf158Q8N1D5 194 aa11.12□□□□□ -0.63
SCLT1-208ENST00000506368 J3QLI3 93 aa11.12□□□□□ -0.63
SCLT1-208ENST00000506368 ATP5EP56381 51 aaPredicted RBP11.12□□□□□ -0.63
SCLT1-208ENST00000506368 MTORP42345 2549 aa11.11□□□□□ -0.63
SCLT1-208ENST00000506368 LOC110117498A0A087WWA1 95 aa11.11□□□□□ -0.63
SCLT1-208ENST00000506368 H7BZZ5 65 aa11.11□□□□□ -0.63
SCLT1-208ENST00000506368 PDE6GP18545 87 aa11.11□□□□□ -0.63
SCLT1-208ENST00000506368 SLURP1P55000 103 aa11.11□□□□□ -0.63
SCLT1-208ENST00000506368 STHQ8IWL8 128 aa11.1□□□□□ -0.63
SCLT1-208ENST00000506368 Q8IZM0 81 aa11.1□□□□□ -0.63
SCLT1-208ENST00000506368 COX17Q14061 63 aa11.1□□□□□ -0.63
SCLT1-208ENST00000506368 DEFB114Q30KQ6 69 aa11.1□□□□□ -0.63
SCLT1-208ENST00000506368 FAM19A1Q7Z5A9 133 aa11.1□□□□□ -0.63
SCLT1-208ENST00000506368 ZNF702PQ9H963 129 aa11.1□□□□□ -0.63
SCLT1-208ENST00000506368 SMIM26A0A096LP01 95 aa11.09□□□□□ -0.63
SCLT1-208ENST00000506368 C6orf226Q5I0X4 101 aa11.09□□□□□ -0.63
SCLT1-208ENST00000506368 Q6ZTI0 123 aa11.09□□□□□ -0.63
SCLT1-208ENST00000506368 NSD1Q96L73 2696 aaPredicted RBP11.09□□□□□ -0.63
SCLT1-208ENST00000506368 NIPBLQ6KC79 2804 aaeCLIP11.09□□□□□ -0.63
SCLT1-208ENST00000506368 C4orf3Q8WVX3 66 aa11.08□□□□□ -0.63
SCLT1-208ENST00000506368 LINC00482Q8N8I6 264 aa11.08□□□□□ -0.64
SCLT1-208ENST00000506368 HIVEP2P31629 2446 aa11.08□□□□□ -0.64
SCLT1-208ENST00000506368 TRBV6-8A0A0A6YYG3 113 aa11.07□□□□□ -0.64
SCLT1-208ENST00000506368 CXCL6P80162 114 aa11.07□□□□□ -0.64
SCLT1-208ENST00000506368 C16orf74Q96GX8 76 aa11.07□□□□□ -0.64
SCLT1-208ENST00000506368 FN1P02751 2386 aaKnown RBP11.07□□□□□ -0.64
SCLT1-208ENST00000506368 ZNF561-AS1K7EIQ3 104 aa11.07□□□□□ -0.64
SCLT1-208ENST00000506368 RBM3P98179 157 aaKnown RBP11.07□□□□□ -0.64
SCLT1-208ENST00000506368 MUC7Q8TAX7 377 aa11.06□□□□□ -0.64
SCLT1-208ENST00000506368 CMC4P56277 68 aaPredicted RBP11.05□□□□□ -0.64
SCLT1-208ENST00000506368 NANOS2P60321 138 aaKnown RBP11.05□□□□□ -0.64
SCLT1-208ENST00000506368 Q6ZQT0 140 aa11.05□□□□□ -0.64
SCLT1-208ENST00000506368 INAFM1C9JVW0 142 aa11.05□□□□□ -0.64
SCLT1-208ENST00000506368 LINC00959A0A1B0GUT2 108 aa11.04□□□□□ -0.64
SCLT1-208ENST00000506368 C6orf223Q8N319 242 aa11.04□□□□□ -0.64
SCLT1-208ENST00000506368 IGLV4-60A0A075B6I1 120 aa11.04□□□□□ -0.64
SCLT1-208ENST00000506368 ODF3L2Q3SX64 289 aa11.04□□□□□ -0.64
SCLT1-208ENST00000506368 Q6YL49 198 aa11.04□□□□□ -0.64
SCLT1-208ENST00000506368 WFDC9Q8NEX5 89 aa11.04□□□□□ -0.64
SCLT1-208ENST00000506368 TRGV2A0A075B6R0 118 aa11.02□□□□□ -0.65
SCLT1-208ENST00000506368 LINC01547P58512 204 aaPredicted RBP11.02□□□□□ -0.65
SCLT1-208ENST00000506368 C9orf66Q5T8R8 295 aa11.02□□□□□ -0.65
SCLT1-208ENST00000506368 NOP10Q9NPE3 64 aaKnown RBP11.02□□□□□ -0.65
SCLT1-208ENST00000506368 IGKV3OR2-268A0A0C4DH90 116 aa11.01□□□□□ -0.65
SCLT1-208ENST00000506368 DEFB136Q30KP8 78 aa11.01□□□□□ -0.65
SCLT1-208ENST00000506368 LINC00575Q6W349 94 aa11.01□□□□□ -0.65
SCLT1-208ENST00000506368 TRGV4A0A0C4DH28 118 aa11□□□□□ -0.65
SCLT1-208ENST00000506368 A0A1B0GUV1 79 aa11□□□□□ -0.65
SCLT1-208ENST00000506368 IGHV4-28A0A0C4DH34 117 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms