RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 SRIP30626 198 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 CKS2P33552 79 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 DEFB135Q30KP9 77 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 MRPL51Q4U2R6 128 aaKnown RBP2.38□□□□□ -2.03
PTCD3-216ENST00000487043 DEFB121Q5J5C9 76 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 SLC25A34Q6PIV7 304 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 FA2HQ7L5A8 372 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 OR5A1Q8NGJ0 315 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 OR11H2Q8NH07 326 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 CHCHD1Q96BP2 118 aaKnown RBP2.38□□□□□ -2.03
PTCD3-216ENST00000487043 MRAP2Q96G30 205 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 PRELID3AQ96N28 172 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 SIGMAR1Q99720 223 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 ANAPC13Q9BS18 74 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 NOP10Q9NPE3 64 aaKnown RBP2.38□□□□□ -2.03
PTCD3-216ENST00000487043 SPANXA1Q9NS26 97 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 TP53TG1Q9Y2A0 90 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 TRRAPQ9Y4A5 3859 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 MGAM2Q2M2H8 2515 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 NOTCH1P46531 2555 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 NBEAL2Q6ZNJ1 2754 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 TRGV1A0A0A0MS02 117 aa2.37□□□□□ -2.03
PTCD3-216ENST00000487043 H3BRM9 83 aa2.37□□□□□ -2.03
PTCD3-216ENST00000487043 K7EIL1 84 aa2.37□□□□□ -2.03
PTCD3-216ENST00000487043 CFAP126Q5VTH2 177 aa2.37□□□□□ -2.03
PTCD3-216ENST00000487043 AMMECR1LQ6DCA0 310 aa2.37□□□□□ -2.03
PTCD3-216ENST00000487043 Q6ZTI0 123 aa2.37□□□□□ -2.03
PTCD3-216ENST00000487043 MIR7-3HGQ8N6C7 128 aa2.37□□□□□ -2.03
PTCD3-216ENST00000487043 SPANXA2-OT1Q8N9U9 137 aa2.37□□□□□ -2.03
PTCD3-216ENST00000487043 C18orf32Q8TCD1 76 aa2.37□□□□□ -2.03
PTCD3-216ENST00000487043 TMEM70Q9BUB7 260 aa2.37□□□□□ -2.03
PTCD3-216ENST00000487043 MRPL16Q9NX20 251 aaKnown RBP2.37□□□□□ -2.03
PTCD3-216ENST00000487043 HSPB8Q9UJY1 196 aa2.37□□□□□ -2.03
PTCD3-216ENST00000487043 TRGV2A0A075B6R0 118 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 TRAV26-2A0A0B4J265 109 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 TRAV4A0A0B4J268 109 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 TRBV6-5A0A0K0K1A5 114 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 M0QY20 66 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 TAX1BP3O14907 124 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 NCR2O95944 276 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 NPYP01303 97 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 IGHV3-53P01767 116 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 PRB2P02812 416 aaPredicted RBP2.36□□□□□ -2.03
PTCD3-216ENST00000487043 MGPP08493 103 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 SPART-AS1P0CW21 52 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 POLR2KP53803 58 aaKnown RBP2.36□□□□□ -2.03
PTCD3-216ENST00000487043 EMP1P54849 157 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 ZNF56Q15929 161 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 BVES-AS1Q5T3Y7 98 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 FAM74A4Q5TZK3 123 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 SBSPONQ8IVN8 264 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 Q8NAQ8 132 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 DNAJC30Q96LL9 226 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 C20orf78Q9BR46 151 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 TM2D3Q9BRN9 247 aa2.36□□□□□ -2.03
PTCD3-216ENST00000487043 NXT2Q9NPJ8 142 aaKnown RBP2.36□□□□□ -2.03
PTCD3-216ENST00000487043 IGLV2-18A0A075B6J9 118 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 TRAV8-3A0A0A6YYJ7 113 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 IGHV3-73A0A0B4J1V6 119 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 TRBV10-1A0A0K0K1A3 114 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 TRBV27A0A0K0K1C4 114 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 TRBV6-4A0A1B0GX49 114 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 LINC01546A6NGU7 62 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 F8W1H4 67 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 K7EMI3 77 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 DEFB4AO15263 64 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 LEPROTL1O95214 131 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 SMIM13P0DJ93 91 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 SCGB1C2P0DMR2 95 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 DEFB130BP0DP73 79 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 DEFB130AP0DP74 79 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 IFI27P40305 119 aaPredicted RBP2.35□□□□□ -2.03
PTCD3-216ENST00000487043 MOBPQ13875 183 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 TMEM97Q5BJF2 176 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 NEGR1Q7Z3B1 354 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 SPATA12Q7Z6I5 190 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 Q8N8P6 123 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 RPL39LQ96EH5 51 aaKnown RBP2.35□□□□□ -2.03
PTCD3-216ENST00000487043 C11orf68Q9H3H3 251 aaKnown RBP2.35□□□□□ -2.03
PTCD3-216ENST00000487043 MAP1LC3AQ9H492 121 aa2.35□□□□□ -2.03
PTCD3-216ENST00000487043 TRBV7-3A0A075B6L6 115 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 TRGV4A0A0C4DH28 118 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 SDHAF1A6NFY7 115 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 SYS1-DBNDD2H3BUS1 97 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 I3L3M4 83 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 K7EP34 96 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 ATP5G1P05496 136 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 COX8AP10176 69 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 FABP2P12104 132 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 FCER1GP30273 86 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 CKS1BP61024 79 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 DAD1P61803 113 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 HSD52Q0P140 79 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 RHOHQ15669 191 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 C12orf74Q32Q52 190 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 FAM19A2Q8N3H0 131 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 ST20-AS1Q8NBB2 130 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 ZNRF2Q8NHG8 242 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 B9D2Q9BPU9 175 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 PRADC1Q9BSG0 188 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms