RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 ARL2-SNX15V9GYD0 113 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 V9GYH0 126 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 DNAJC13O75165 2243 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 PLXNC1O60486 1568 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 DIP2CQ9Y2E4 1556 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 CC2D2AQ9P2K1 1620 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 TMEM2Q9UHN6 1383 aa-0.71□□□□□ -2.52
SCN1A-205ENST00000473295 ANKRD36A6QL64 1941 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 NUP188Q5SRE5 1749 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 KIAA1551Q9HCM1 1747 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 UNC13AQ9UPW8 1703 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 ZNF518AQ6AHZ1 1483 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 BCORQ6W2J9 1755 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 KNL1Q8NG31 2342 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 A0A1B0GU69 56 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 hADV29S1A0JD25 119 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 H7BZZ5 65 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 NDUFA2O43678 99 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 IFNA17P01571 189 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 MT1FP04733 61 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 IL5P05113 134 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 IGLC2P0DOY2 106 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 IGLC3P0DOY3 106 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 RPS25P62851 125 aaKnown RBP-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 Q0VG73 95 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 SPANXN1Q5VSR9 72 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 C6orf201Q7Z4U5 140 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 AKAP14Q86UN6 197 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 KCNRGQ8N5I3 272 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 NXT2Q9NPJ8 142 aaKnown RBP-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 RPRMQ9NS64 109 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 CHMP5Q9NZZ3 219 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 HIGD1BQ9P298 99 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 SAMD9Q5K651 1589 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 MAST1Q9Y2H9 1570 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 ITPR2Q14571 2701 aa-0.72□□□□□ -2.52
SCN1A-205ENST00000473295 ACACAQ13085 2346 aa-0.72□□□□□ -2.53
SCN1A-205ENST00000473295 CHD1O14646 1710 aa-0.72□□□□□ -2.53
SCN1A-205ENST00000473295 NWD2Q9ULI1 1742 aa-0.72□□□□□ -2.53
SCN1A-205ENST00000473295 DMXL2Q8TDJ6 3036 aa-0.72□□□□□ -2.53
SCN1A-205ENST00000473295 RGPD3A6NKT7 1758 aaPredicted RBP-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 RGPD4Q7Z3J3 1758 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 MAPKBP1O60336 1514 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 MYH8P13535 1937 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 SMARCA2P51531 1590 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 GNG7O60262 68 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 DPM2O94777 84 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 NDUFB6O95139 128 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 TPM3P06753 285 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 NEFHP12036 1026 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 HIST1H1BP16401 226 aaKnown RBP-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 RPS27P42677 84 aaKnown RBP-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 CRIP1P50238 77 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 CKS1BP61024 79 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 MAGOHP61326 146 aaKnown RBP-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 TPM4P67936 248 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 DR1Q01658 176 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 KRTAP19-2Q3LHN2 52 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 SCGB2B2Q4G0G5 96 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 ALKAL2Q6UX46 152 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 HEPN1Q6WQI6 88 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 COX6B2Q6YFQ2 88 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 RPS27LQ71UM5 84 aaKnown RBP-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 C5orf38Q86SI9 138 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 TCTE3Q8IZS6 198 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 OR9Q1Q8NGQ5 310 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 MAGOHBQ96A72 148 aaKnown RBP-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 BTF3L4Q96K17 158 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 FAM167A-AS1Q96KT0 104 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 SMIM3Q9BZL3 60 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 CHMP4BQ9H444 224 aaKnown RBP-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 DYNLRB1Q9NP97 96 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 LINC00846Q9NV44 126 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 CDKN2A-AS1Q9UH64 79 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 GINS2Q9Y248 185 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 R4GMQ9 66 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 CSMD2Q7Z408 3487 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 SPTA1P02549 2419 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 UBR1Q8IWV7 1749 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 FHAD1B1AJZ9 1412 aa-0.73□□□□□ -2.53
SCN1A-205ENST00000473295 PRDM15P57071 1507 aaPredicted RBP-0.74□□□□□ -2.53
SCN1A-205ENST00000473295 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.74□□□□□ -2.53
SCN1A-205ENST00000473295 SETBP1Q9Y6X0 1596 aa-0.74□□□□□ -2.53
SCN1A-205ENST00000473295 LRRK2Q5S007 2527 aa-0.74□□□□□ -2.53
SCN1A-205ENST00000473295 SHPRHQ149N8 1683 aa-0.74□□□□□ -2.53
SCN1A-205ENST00000473295 PREX1Q8TCU6 1659 aa-0.74□□□□□ -2.53
SCN1A-205ENST00000473295 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.74□□□□□ -2.53
SCN1A-205ENST00000473295 ITSN2Q9NZM3 1697 aa-0.74□□□□□ -2.53
SCN1A-205ENST00000473295 A0A0G2JMZ2 1700 aa-0.74□□□□□ -2.53
SCN1A-205ENST00000473295 C7orf77A4D0Y5 90 aa-0.74□□□□□ -2.53
SCN1A-205ENST00000473295 LYNX1G3V0Z9 82 aa-0.74□□□□□ -2.53
SCN1A-205ENST00000473295 MT-ATP8P03928 68 aa-0.74□□□□□ -2.53
SCN1A-205ENST00000473295 CMPK1P30085 196 aa-0.74□□□□□ -2.53
SCN1A-205ENST00000473295 SRP9P49458 86 aaKnown RBP-0.74□□□□□ -2.53
SCN1A-205ENST00000473295 B2MP61769 119 aa-0.74□□□□□ -2.53
SCN1A-205ENST00000473295 SEC11AP67812 179 aa-0.74□□□□□ -2.53
SCN1A-205ENST00000473295 TOMM20LQ6UXN7 152 aa-0.74□□□□□ -2.53
SCN1A-205ENST00000473295 COMMD6Q7Z4G1 85 aa-0.74□□□□□ -2.53
SCN1A-205ENST00000473295 CTAGE3PQ8IX95 158 aa-0.74□□□□□ -2.53
SCN1A-205ENST00000473295 SREK1IP1Q8N9Q2 155 aaPredicted RBP-0.74□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms