RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 Q6ZRU5 148 aa10.98□□□□□ -0.65
COL7A1-202ENST00000422991 COX7B2Q8TF08 81 aa10.98□□□□□ -0.65
COL7A1-202ENST00000422991 LRP1BQ9NZR2 4599 aa10.97□□□□□ -0.65
COL7A1-202ENST00000422991 NDUFA1O15239 70 aa10.97□□□□□ -0.65
COL7A1-202ENST00000422991 KRTAP10-1P60331 282 aa10.97□□□□□ -0.65
COL7A1-202ENST00000422991 C6orf226Q5I0X4 101 aa10.96□□□□□ -0.65
COL7A1-202ENST00000422991 C10orf25Q5T742 122 aa10.96□□□□□ -0.65
COL7A1-202ENST00000422991 C2orf82Q6UX34 121 aa10.96□□□□□ -0.65
COL7A1-202ENST00000422991 C20orf202A1L168 122 aa10.95□□□□□ -0.66
COL7A1-202ENST00000422991 UNQ6190/PRO20217Q6UXQ8 127 aa10.95□□□□□ -0.66
COL7A1-202ENST00000422991 CXCL5P42830 114 aa10.94□□□□□ -0.66
COL7A1-202ENST00000422991 CKS1BP61024 79 aa10.94□□□□□ -0.66
COL7A1-202ENST00000422991 RNF151Q2KHN1 245 aa10.93□□□□□ -0.66
COL7A1-202ENST00000422991 C6orf48Q9UBA6 75 aa10.93□□□□□ -0.66
COL7A1-202ENST00000422991 DNAH8Q96JB1 4490 aa10.92□□□□□ -0.66
COL7A1-202ENST00000422991 TRBV30A0A0K0K1B3 111 aa10.92□□□□□ -0.66
COL7A1-202ENST00000422991 SDIM1Q6ZPB5 146 aa10.92□□□□□ -0.66
COL7A1-202ENST00000422991 HERVK_113P61574 105 aa10.91□□□□□ -0.66
COL7A1-202ENST00000422991 Q6ZSA8 131 aa10.9□□□□□ -0.66
COL7A1-202ENST00000422991 PKIGQ9Y2B9 76 aa10.9□□□□□ -0.66
COL7A1-202ENST00000422991 LEPROTO15243 131 aa10.89□□□□□ -0.67
COL7A1-202ENST00000422991 AKR1D1P51857 326 aa10.89□□□□□ -0.67
COL7A1-202ENST00000422991 LOC107984640A0A0U1RRK4 108 aa10.88□□□□□ -0.67
COL7A1-202ENST00000422991 CDK2AP2O75956 126 aa10.88□□□□□ -0.67
COL7A1-202ENST00000422991 TSPEAR-AS2P59090 65 aa10.88□□□□□ -0.67
COL7A1-202ENST00000422991 ZNF625Q96I27 306 aaPredicted RBP10.88□□□□□ -0.67
COL7A1-202ENST00000422991 FAM30AQ9NZY2 134 aa10.88□□□□□ -0.67
COL7A1-202ENST00000422991 APOBP04114 4563 aaKnown RBP10.88□□□□□ -0.67
COL7A1-202ENST00000422991 RYR1P21817 5038 aa10.87□□□□□ -0.67
COL7A1-202ENST00000422991 TLX1NBP0CAT3 122 aa10.87□□□□□ -0.67
COL7A1-202ENST00000422991 C9orf116Q5BN46 136 aaPredicted RBP10.87□□□□□ -0.67
COL7A1-202ENST00000422991 SFTA2Q6UW10 78 aa10.87□□□□□ -0.67
COL7A1-202ENST00000422991 ATOH7Q8N100 152 aa10.87□□□□□ -0.67
COL7A1-202ENST00000422991 PLEKHB2Q96CS7 222 aa10.87□□□□□ -0.67
COL7A1-202ENST00000422991 PCLOQ9Y6V0 5065 aa10.86□□□□□ -0.67
COL7A1-202ENST00000422991 A0A096LNI7 61 aa10.86□□□□□ -0.67
COL7A1-202ENST00000422991 E9PLD3 99 aa10.86□□□□□ -0.67
COL7A1-202ENST00000422991 STPG4Q8N801 248 aa10.86□□□□□ -0.67
COL7A1-202ENST00000422991 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.86□□□□□ -0.67
COL7A1-202ENST00000422991 PANO1I0J062 215 aa10.85□□□□□ -0.67
COL7A1-202ENST00000422991 J3QQQ9 107 aa10.85□□□□□ -0.67
COL7A1-202ENST00000422991 CHTF8P0CG12 524 aa10.85□□□□□ -0.67
COL7A1-202ENST00000422991 RPL18AQ02543 176 aaKnown RBP10.85□□□□□ -0.67
COL7A1-202ENST00000422991 CIRBPQ14011 172 aaKnown RBP10.85□□□□□ -0.67
COL7A1-202ENST00000422991 HSPG2P98160 4391 aa10.85□□□□□ -0.67
COL7A1-202ENST00000422991 PTTG1IPP53801 180 aa10.84□□□□□ -0.67
COL7A1-202ENST00000422991 SPACA4Q8TDM5 124 aa10.84□□□□□ -0.67
COL7A1-202ENST00000422991 NDUFA12Q9UI09 145 aa10.84□□□□□ -0.67
COL7A1-202ENST00000422991 IGKV2-24A0A0C4DH68 120 aa10.83□□□□□ -0.68
COL7A1-202ENST00000422991 NDUFC2-KCTD14E9PQ53 114 aa10.83□□□□□ -0.68
COL7A1-202ENST00000422991 Q6ZRP5 223 aa10.83□□□□□ -0.68
COL7A1-202ENST00000422991 SCGB1D1O95968 90 aa10.82□□□□□ -0.68
COL7A1-202ENST00000422991 LGALS3P17931 250 aaKnown RBP10.82□□□□□ -0.68
COL7A1-202ENST00000422991 GAGE2BQ13066 116 aa10.82□□□□□ -0.68
COL7A1-202ENST00000422991 LINC00474Q9P2X8 69 aa10.82□□□□□ -0.68
COL7A1-202ENST00000422991 IGKV2D-26A0A0A0MRZ7 120 aa10.81□□□□□ -0.68
COL7A1-202ENST00000422991 NMUP48645 174 aa10.81□□□□□ -0.68
COL7A1-202ENST00000422991 XGP55808 180 aa10.81□□□□□ -0.68
COL7A1-202ENST00000422991 ANKRD39Q53RE8 183 aa10.81□□□□□ -0.68
COL7A1-202ENST00000422991 ERG28Q9UKR5 140 aa10.81□□□□□ -0.68
COL7A1-202ENST00000422991 MYMXA0A1B0GTQ4 84 aa10.8□□□□□ -0.68
COL7A1-202ENST00000422991 HERV-K104P63124 156 aa10.8□□□□□ -0.68
COL7A1-202ENST00000422991 HAMPP81172 84 aa10.8□□□□□ -0.68
COL7A1-202ENST00000422991 MAJINQ3KP22 176 aa10.8□□□□□ -0.68
COL7A1-202ENST00000422991 SCXQ7RTU7 201 aa10.8□□□□□ -0.68
COL7A1-202ENST00000422991 GAGE2EQ4V326 116 aa10.79□□□□□ -0.68
COL7A1-202ENST00000422991 KRTAP17-1Q9BYP8 105 aa10.79□□□□□ -0.68
COL7A1-202ENST00000422991 GAGE2DQ9UEU5 116 aa10.79□□□□□ -0.68
COL7A1-202ENST00000422991 COX17Q14061 63 aa10.78□□□□□ -0.68
COL7A1-202ENST00000422991 JOSD1Q15040 202 aaPredicted RBP10.78□□□□□ -0.68
COL7A1-202ENST00000422991 CIRBP-AS1Q8TBR5 109 aa10.78□□□□□ -0.68
COL7A1-202ENST00000422991 PFN2P35080 140 aa10.77□□□□□ -0.69
COL7A1-202ENST00000422991 A0A087WYN8 130 aa10.76□□□□□ -0.69
COL7A1-202ENST00000422991 PLAC8Q9NZF1 115 aa10.76□□□□□ -0.69
COL7A1-202ENST00000422991 HSBP1L1C9JCN9 74 aa10.75□□□□□ -0.69
COL7A1-202ENST00000422991 C9orf129Q5T035 196 aaKnown RBP10.75□□□□□ -0.69
COL7A1-202ENST00000422991 DPH3Q96FX2 82 aa10.75□□□□□ -0.69
COL7A1-202ENST00000422991 TTTY13Q9BZ97 58 aa10.75□□□□□ -0.69
COL7A1-202ENST00000422991 ZNF815PA8K554 130 aa10.74□□□□□ -0.69
COL7A1-202ENST00000422991 SMIM13P0DJ93 91 aa10.74□□□□□ -0.69
COL7A1-202ENST00000422991 MEIG1Q5JSS6 88 aa10.74□□□□□ -0.69
COL7A1-202ENST00000422991 XAGE1AQ9HD64 81 aa10.74□□□□□ -0.69
COL7A1-202ENST00000422991 A0A0J9YXY3 114 aa10.73□□□□□ -0.69
COL7A1-202ENST00000422991 LINC00587B1AMM8 73 aa10.73□□□□□ -0.69
COL7A1-202ENST00000422991 EPM2AB3EWF7 344 aa10.73□□□□□ -0.69
COL7A1-202ENST00000422991 LINC00158P58513 81 aa10.73□□□□□ -0.69
COL7A1-202ENST00000422991 A0A0U1RRA0 63 aa10.72□□□□□ -0.69
COL7A1-202ENST00000422991 A0A1W2PNN7 141 aa10.72□□□□□ -0.69
COL7A1-202ENST00000422991 PYY3Q5JQD4 70 aa10.72□□□□□ -0.69
COL7A1-202ENST00000422991 Q8N1X5 172 aa10.72□□□□□ -0.69
COL7A1-202ENST00000422991 KRTAP4-5Q9BYR2 181 aa10.72□□□□□ -0.69
COL7A1-202ENST00000422991 SND1-IT1Q9HBX3 110 aa10.72□□□□□ -0.69
COL7A1-202ENST00000422991 ABCA13Q86UQ4 5058 aa10.71□□□□□ -0.69
COL7A1-202ENST00000422991 FAM168BA1KXE4 195 aa10.71□□□□□ -0.69
COL7A1-202ENST00000422991 PCP2Q8IVA1 136 aa10.71□□□□□ -0.69
COL7A1-202ENST00000422991 FAM19A5Q7Z5A7 132 aaPredicted RBP10.69□□□□□ -0.7
COL7A1-202ENST00000422991 KRTAP7-1Q8IUC3 87 aa10.69□□□□□ -0.7
COL7A1-202ENST00000422991 MIR7-3HGQ8N6C7 128 aa10.69□□□□□ -0.7
COL7A1-202ENST00000422991 SERTAD4-AS1Q5TG53 156 aa10.68□□□□□ -0.7
COL7A1-202ENST00000422991 VAMP8Q9BV40 100 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms