RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 NACAE9PAV3 2078 aa7.93□□□□□ -1.14
CUX1-204ENST00000393824 IGKV3-20P01619 116 aa7.92□□□□□ -1.14
CUX1-204ENST00000393824 COX6A2Q02221 97 aa7.92□□□□□ -1.14
CUX1-204ENST00000393824 FAM19A3Q7Z5A8 133 aa7.92□□□□□ -1.14
CUX1-204ENST00000393824 OVOL2Q9BRP0 275 aa7.92□□□□□ -1.14
CUX1-204ENST00000393824 IGHV3-73A0A0B4J1V6 119 aa7.92□□□□□ -1.14
CUX1-204ENST00000393824 DNAL4O96015 105 aa7.92□□□□□ -1.14
CUX1-204ENST00000393824 ZNF625Q96I27 306 aaPredicted RBP7.92□□□□□ -1.14
CUX1-204ENST00000393824 NBEAL1Q6ZS30 2694 aa7.92□□□□□ -1.14
CUX1-204ENST00000393824 Q9HAA7 133 aa7.91□□□□□ -1.14
CUX1-204ENST00000393824 Q9UF83 564 aa7.91□□□□□ -1.14
CUX1-204ENST00000393824 MGAM2Q2M2H8 2515 aa7.91□□□□□ -1.14
CUX1-204ENST00000393824 TRAV13-2A0A0B4J235 113 aa7.91□□□□□ -1.14
CUX1-204ENST00000393824 A0A0U1RRA0 63 aa7.91□□□□□ -1.14
CUX1-204ENST00000393824 LINC00242Q5T6M2 205 aa7.91□□□□□ -1.14
CUX1-204ENST00000393824 LINC01561Q8N1V8 128 aa7.91□□□□□ -1.14
CUX1-204ENST00000393824 IGHV3OR16-12A0A075B7B8 117 aa7.9□□□□□ -1.14
CUX1-204ENST00000393824 SMIM1B2RUZ4 78 aa7.9□□□□□ -1.14
CUX1-204ENST00000393824 NDUFC2-KCTD14E9PQ53 114 aa7.9□□□□□ -1.14
CUX1-204ENST00000393824 LINC00846Q9NV44 126 aa7.9□□□□□ -1.14
CUX1-204ENST00000393824 USP17L23D6RBM5 183 aa7.9□□□□□ -1.15
CUX1-204ENST00000393824 Q6ZSN1 163 aa7.9□□□□□ -1.15
CUX1-204ENST00000393824 LINC00482Q8N8I6 264 aa7.9□□□□□ -1.15
CUX1-204ENST00000393824 MDFIQ99750 246 aa7.9□□□□□ -1.15
CUX1-204ENST00000393824 IGKV3D-7A0A0C4DH55 119 aa7.89□□□□□ -1.15
CUX1-204ENST00000393824 IGHV3-53P01767 116 aa7.89□□□□□ -1.15
CUX1-204ENST00000393824 DEFB114Q30KQ6 69 aa7.89□□□□□ -1.15
CUX1-204ENST00000393824 DGAT2L7PQ6IED9 249 aa7.89□□□□□ -1.15
CUX1-204ENST00000393824 RBMY1A1P0DJD3 496 aaKnown RBP7.88□□□□□ -1.15
CUX1-204ENST00000393824 RBMY1CP0DJD4 496 aa7.88□□□□□ -1.15
CUX1-204ENST00000393824 RBMY1FQ15415 496 aaKnown RBP7.88□□□□□ -1.15
CUX1-204ENST00000393824 C9orf129Q5T035 196 aaKnown RBP7.88□□□□□ -1.15
CUX1-204ENST00000393824 C14orf132Q9NPU4 83 aa7.88□□□□□ -1.15
CUX1-204ENST00000393824 A0A087WVE0 104 aa7.87□□□□□ -1.15
CUX1-204ENST00000393824 EPM2AB3EWF7 344 aa7.87□□□□□ -1.15
CUX1-204ENST00000393824 NDUFC2O95298 119 aa7.87□□□□□ -1.15
CUX1-204ENST00000393824 NBEAL2Q6ZNJ1 2754 aa7.87□□□□□ -1.15
CUX1-204ENST00000393824 H0YGX0 51 aa7.87□□□□□ -1.15
CUX1-204ENST00000393824 KNCNA6PVL3 124 aa7.86□□□□□ -1.15
CUX1-204ENST00000393824 CRPP02741 224 aa7.86□□□□□ -1.15
CUX1-204ENST00000393824 IGHV3-38A0A0C4DH36 116 aa7.86□□□□□ -1.15
CUX1-204ENST00000393824 FAM236DA0A1B0GTK5 79 aa7.86□□□□□ -1.15
CUX1-204ENST00000393824 FAM236CP0DP71 79 aa7.86□□□□□ -1.15
CUX1-204ENST00000393824 LINC00337Q8N6G1 96 aa7.86□□□□□ -1.15
CUX1-204ENST00000393824 DYNLRB2Q8TF09 96 aa7.86□□□□□ -1.15
CUX1-204ENST00000393824 A0A087WYN8 130 aa7.85□□□□□ -1.15
CUX1-204ENST00000393824 FHL2Q14192 279 aa7.85□□□□□ -1.15
CUX1-204ENST00000393824 C1orf195Q5TG92 126 aa7.85□□□□□ -1.15
CUX1-204ENST00000393824 IGKV2-28A0A075B6P5 120 aa7.85□□□□□ -1.15
CUX1-204ENST00000393824 IGKV2D-28P01615 120 aa7.85□□□□□ -1.15
CUX1-204ENST00000393824 WFDC10AQ9H1F0 79 aa7.85□□□□□ -1.15
CUX1-204ENST00000393824 IGLV1-51P01701 117 aa7.84□□□□□ -1.15
CUX1-204ENST00000393824 SERP1Q9Y6X1 66 aa7.84□□□□□ -1.15
CUX1-204ENST00000393824 SMIM11BQ8TCY0 68 aa7.84□□□□□ -1.15
CUX1-204ENST00000393824 HTN1P15515 57 aa7.83□□□□□ -1.16
CUX1-204ENST00000393824 DEFB131AP59861 70 aa7.83□□□□□ -1.16
CUX1-204ENST00000393824 ODF3L2Q3SX64 289 aa7.83□□□□□ -1.16
CUX1-204ENST00000393824 C11orf72Q8NBR9 251 aa7.83□□□□□ -1.16
CUX1-204ENST00000393824 SND1-IT1Q9HBX3 110 aa7.83□□□□□ -1.16
CUX1-204ENST00000393824 S100A7L2Q5SY68 101 aa7.82□□□□□ -1.16
CUX1-204ENST00000393824 RBMY1BA6NDE4 496 aaKnown RBP7.81□□□□□ -1.16
CUX1-204ENST00000393824 RBMY1EA6NEQ0 496 aaKnown RBP7.81□□□□□ -1.16
CUX1-204ENST00000393824 CCKP06307 115 aa7.81□□□□□ -1.16
CUX1-204ENST00000393824 RBMY1DP0C7P1 496 aaKnown RBP7.81□□□□□ -1.16
CUX1-204ENST00000393824 ATP5EP2Q5VTU8 51 aa7.81□□□□□ -1.16
CUX1-204ENST00000393824 TMEM243Q9BU79 118 aa7.81□□□□□ -1.16
CUX1-204ENST00000393824 DNAH3Q8TD57 4116 aa7.81□□□□□ -1.16
CUX1-204ENST00000393824 LYPD5Q6UWN5 251 aa7.81□□□□□ -1.16
CUX1-204ENST00000393824 MIR7-3HGQ8N6C7 128 aa7.81□□□□□ -1.16
CUX1-204ENST00000393824 MAP6D1Q9H9H5 199 aa7.81□□□□□ -1.16
CUX1-204ENST00000393824 TRBV10-1A0A0K0K1A3 114 aa7.8□□□□□ -1.16
CUX1-204ENST00000393824 NCR3O14931 201 aa7.8□□□□□ -1.16
CUX1-204ENST00000393824 OXLD1Q5BKU9 147 aa7.8□□□□□ -1.16
CUX1-204ENST00000393824 CDC42SE2Q9NRR3 84 aa7.8□□□□□ -1.16
CUX1-204ENST00000393824 LECT2O14960 151 aa7.8□□□□□ -1.16
CUX1-204ENST00000393824 INSP01308 110 aa7.8□□□□□ -1.16
CUX1-204ENST00000393824 PRM2P04554 102 aa7.8□□□□□ -1.16
CUX1-204ENST00000393824 SS18Q15532 418 aa7.8□□□□□ -1.16
CUX1-204ENST00000393824 WFDC9Q8NEX5 89 aa7.8□□□□□ -1.16
CUX1-204ENST00000393824 GHRHP01286 108 aa7.79□□□□□ -1.16
CUX1-204ENST00000393824 C19orf73Q9NVV2 129 aa7.79□□□□□ -1.16
CUX1-204ENST00000393824 SMIM26A0A096LP01 95 aa7.79□□□□□ -1.16
CUX1-204ENST00000393824 TRBV10-3A0A0K0K1G6 114 aa7.79□□□□□ -1.16
CUX1-204ENST00000393824 RPL36AP83881 106 aaKnown RBP7.78□□□□□ -1.16
CUX1-204ENST00000393824 RPL36ALQ969Q0 106 aaKnown RBP7.78□□□□□ -1.16
CUX1-204ENST00000393824 ORMDL1Q9P0S3 153 aa7.78□□□□□ -1.16
CUX1-204ENST00000393824 JMJD7-PLA2G4BH0Y9G9 81 aa7.77□□□□□ -1.17
CUX1-204ENST00000393824 CCL18P55774 89 aa7.77□□□□□ -1.17
CUX1-204ENST00000393824 NTM-AS1Q6ZSK4 140 aa7.77□□□□□ -1.17
CUX1-204ENST00000393824 BCE1O60756 84 aa7.77□□□□□ -1.17
CUX1-204ENST00000393824 IL17DQ8TAD2 202 aa7.77□□□□□ -1.17
CUX1-204ENST00000393824 COX7B2Q8TF08 81 aa7.77□□□□□ -1.17
CUX1-204ENST00000393824 A0A0U1RQV1 116 aa7.76□□□□□ -1.17
CUX1-204ENST00000393824 FP248Q71RG6 208 aaPredicted RBP7.76□□□□□ -1.17
CUX1-204ENST00000393824 LINC00167Q96N53 147 aa7.76□□□□□ -1.17
CUX1-204ENST00000393824 XCL1P47992 114 aa7.75□□□□□ -1.17
CUX1-204ENST00000393824 KRTAP10-11P60412 298 aa7.75□□□□□ -1.17
CUX1-204ENST00000393824 BRK1Q8WUW1 75 aa7.75□□□□□ -1.17
CUX1-204ENST00000393824 XCL2Q9UBD3 114 aa7.75□□□□□ -1.17
CUX1-204ENST00000393824 TRAV23DV6A0A075B6W5 121 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms