RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 IGLV4-60A0A075B6I1 120 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 IGKV2-28A0A075B6P5 120 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 TRGV2A0A075B6R0 118 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 A0A096LPF7 62 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 IGHV3OR16-9A0A0B4J2B5 98 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 OR11H12B2RN74 326 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 H3BRM9 83 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 IGKV2D-28P01615 120 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 Q6ZUT4 128 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 GTSCR1Q86UQ5 136 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 RAB37Q96AX2 223 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 AP1S3Q96PC3 154 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 MUC17Q685J3 4493 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 H7C1H1 209 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 K7ERJ3 54 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 PRB2P02812 416 aaPredicted RBP1.54□□□□□ -2.16
VPS54-202ENST00000354504 ZNF25P17030 456 aaPredicted RBP1.54□□□□□ -2.16
VPS54-202ENST00000354504 HERV-K104P63124 156 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 KRTAP5-11Q6L8G4 156 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 TMEM141Q96I45 108 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 CARD19Q96LW7 228 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 SPANXDQ9BXN6 97 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 PRR34Q9NV39 138 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 MRPL16Q9NX20 251 aaKnown RBP1.54□□□□□ -2.16
VPS54-202ENST00000354504 SPANXCQ9NY87 97 aa1.54□□□□□ -2.16
VPS54-202ENST00000354504 MYMXA0A1B0GTQ4 84 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 EPM2AB3EWF7 344 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 ATP5LO75964 103 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 DPM2O94777 84 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 TSPAN13O95857 204 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 PLNP26678 52 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 RRN3P1Q2M238 152 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 ORMDL2Q53FV1 153 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 TMEM97Q5BJF2 176 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 TMEM170BQ5T4T1 132 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 TMEM101Q96IK0 257 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 SCGB3A1Q96QR1 104 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 KIR2DL4Q99706 377 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 CHAC1Q9BUX1 264 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 TRBV6-4A0A1B0GX49 114 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 IGLL5B9A064 214 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 I3L3M4 83 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 M0QXV9 152 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 PMVKQ15126 192 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 TAL2Q16559 108 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 ZFAND6Q6FIF0 208 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 SLC25A34Q6PIV7 304 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 SCGB1D4Q6XE38 83 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 KRTAP2-2Q9BYT5 123 aa1.53□□□□□ -2.16
VPS54-202ENST00000354504 NOP10Q9NPE3 64 aaKnown RBP1.53□□□□□ -2.16
VPS54-202ENST00000354504 DAZ3Q9NR90 486 aaKnown RBP1.53□□□□□ -2.16
VPS54-202ENST00000354504 A0A0J9YXV3 536 aa1.53□□□□□ -2.17
VPS54-202ENST00000354504 A0A0J9YXY3 114 aa1.53□□□□□ -2.17
VPS54-202ENST00000354504 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.53□□□□□ -2.17
VPS54-202ENST00000354504 K7EQD1 137 aa1.53□□□□□ -2.17
VPS54-202ENST00000354504 LEPROTO15243 131 aa1.53□□□□□ -2.17
VPS54-202ENST00000354504 IGHV3-30-3P0DP02 117 aa1.53□□□□□ -2.17
VPS54-202ENST00000354504 VAMP3Q15836 100 aa1.53□□□□□ -2.17
VPS54-202ENST00000354504 DEFB121Q5J5C9 76 aa1.53□□□□□ -2.17
VPS54-202ENST00000354504 C3orf56Q8N813 242 aa1.53□□□□□ -2.17
VPS54-202ENST00000354504 MRAPQ8TCY5 172 aa1.53□□□□□ -2.17
VPS54-202ENST00000354504 OBSCN-AS1Q96MR7 158 aa1.53□□□□□ -2.17
VPS54-202ENST00000354504 PRADC1Q9BSG0 188 aa1.53□□□□□ -2.17
VPS54-202ENST00000354504 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.52□□□□□ -2.17
VPS54-202ENST00000354504 TRAV8-3A0A0A6YYJ7 113 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 A0A1W2PPM0 123 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 IGKV2-29A2NJV5 120 aaPredicted RBP1.52□□□□□ -2.17
VPS54-202ENST00000354504 A8MWV9 139 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 TMEM262E9PQX1 116 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 H7C2G1 150 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 K7EP34 96 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 HSD52Q0P140 79 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 COL5A1-AS1Q5SY13 56 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 C9orf129Q5T035 196 aaKnown RBP1.52□□□□□ -2.17
VPS54-202ENST00000354504 OR4C5Q8NGB2 326 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 LINC00167Q96N53 147 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 TRAV13-1A0A0B4J241 112 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 TRGV4A0A0C4DH28 118 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 IGHV1-58A0A0C4DH39 117 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 TRBV10-1A0A0K0K1A3 114 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 NDUFA1O15239 70 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 INSL3P51460 131 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 NPC2P61916 151 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 SEC11AP67812 179 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 DEFB135Q30KP9 77 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 C12orf74Q32Q52 190 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 TEX29Q8N6K0 151 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 C16orf74Q96GX8 76 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 CDKN2A-AS1Q9UH64 79 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 TIMM17BO60830 172 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 INSP01308 110 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 IGHV3-33P01772 117 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 ENHOQ6UWT2 76 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 CYSLTR1Q9Y271 337 aa1.52□□□□□ -2.17
VPS54-202ENST00000354504 TRAV26-1A0A087WT03 109 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 A0A087WZ39 114 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 G3V4G9 280 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 H7C423 109 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 KRTAP10-7P60409 375 aaPredicted RBP1.51□□□□□ -2.17
VPS54-202ENST00000354504 FAM222AQ5U5X8 452 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms