RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 SS18Q15532 418 aa9.29□□□□□ -0.92
NUP54-201ENST00000264883 C10orf99Q6UWK7 81 aa9.29□□□□□ -0.92
NUP54-201ENST00000264883 MXRA5Q9NR99 2828 aa9.29□□□□□ -0.92
NUP54-201ENST00000264883 INSP01308 110 aa9.29□□□□□ -0.92
NUP54-201ENST00000264883 SMIM26A0A096LP01 95 aa9.28□□□□□ -0.92
NUP54-201ENST00000264883 LYPD5Q6UWN5 251 aa9.28□□□□□ -0.92
NUP54-201ENST00000264883 ZNF469Q96JG9 3925 aaPredicted RBP9.28□□□□□ -0.92
NUP54-201ENST00000264883 TMEM86BQ8N661 226 aa9.28□□□□□ -0.92
NUP54-201ENST00000264883 C16orf95Q9H693 158 aa9.28□□□□□ -0.92
NUP54-201ENST00000264883 TRBV10-1A0A0K0K1A3 114 aa9.27□□□□□ -0.93
NUP54-201ENST00000264883 TRBV10-3A0A0K0K1G6 114 aa9.27□□□□□ -0.93
NUP54-201ENST00000264883 FLNAP21333 2647 aaKnown RBP9.27□□□□□ -0.93
NUP54-201ENST00000264883 TRAV7A0A075B6U4 112 aa9.27□□□□□ -0.93
NUP54-201ENST00000264883 LINC00158P58513 81 aa9.27□□□□□ -0.93
NUP54-201ENST00000264883 WFDC11Q8NEX6 87 aa9.27□□□□□ -0.93
NUP54-201ENST00000264883 JMJD7-PLA2G4BH0Y9G9 81 aa9.26□□□□□ -0.93
NUP54-201ENST00000264883 CCL18P55774 89 aa9.26□□□□□ -0.93
NUP54-201ENST00000264883 FP248Q71RG6 208 aaPredicted RBP9.26□□□□□ -0.93
NUP54-201ENST00000264883 HECTD1Q9ULT8 2610 aa9.26□□□□□ -0.93
NUP54-201ENST00000264883 ZNF702PQ9H963 129 aa9.26□□□□□ -0.93
NUP54-201ENST00000264883 COX7B2Q8TF08 81 aa9.25□□□□□ -0.93
NUP54-201ENST00000264883 UBL5Q9BZL1 73 aa9.25□□□□□ -0.93
NUP54-201ENST00000264883 TLN2Q9Y4G6 2542 aa9.25□□□□□ -0.93
NUP54-201ENST00000264883 MAP6D1Q9H9H5 199 aa9.24□□□□□ -0.93
NUP54-201ENST00000264883 CDC42SE2Q9NRR3 84 aa9.24□□□□□ -0.93
NUP54-201ENST00000264883 TOMM7Q9P0U1 55 aa9.24□□□□□ -0.93
NUP54-201ENST00000264883 BCE1O60756 84 aa9.23□□□□□ -0.93
NUP54-201ENST00000264883 KLKP1Q107X0 134 aa9.23□□□□□ -0.93
NUP54-201ENST00000264883 PAX4O43316 350 aa9.23□□□□□ -0.93
NUP54-201ENST00000264883 Q6YL49 198 aa9.23□□□□□ -0.93
NUP54-201ENST00000264883 AKAP9Q99996 3911 aa9.22□□□□□ -0.93
NUP54-201ENST00000264883 IL17DQ8TAD2 202 aa9.22□□□□□ -0.93
NUP54-201ENST00000264883 SLURP1P55000 103 aa9.22□□□□□ -0.93
NUP54-201ENST00000264883 DYNLRB2Q8TF09 96 aa9.22□□□□□ -0.93
NUP54-201ENST00000264883 SNURFQ9Y675 71 aa9.22□□□□□ -0.93
NUP54-201ENST00000264883 K7EQD1 137 aa9.21□□□□□ -0.93
NUP54-201ENST00000264883 C4orf3Q8WVX3 66 aa9.21□□□□□ -0.93
NUP54-201ENST00000264883 F8WEM9 126 aa9.21□□□□□ -0.94
NUP54-201ENST00000264883 RMI2Q96E14 147 aa9.21□□□□□ -0.94
NUP54-201ENST00000264883 LINC00167Q96N53 147 aa9.21□□□□□ -0.94
NUP54-201ENST00000264883 TMEM256-PLSCR3K7ERE1 68 aa9.2□□□□□ -0.94
NUP54-201ENST00000264883 KRTAP1-1Q07627 177 aa9.2□□□□□ -0.94
NUP54-201ENST00000264883 NTM-AS1Q6ZSK4 140 aa9.2□□□□□ -0.94
NUP54-201ENST00000264883 LY6G6DO95868 133 aa9.19□□□□□ -0.94
NUP54-201ENST00000264883 RBM3P98179 157 aaKnown RBP9.19□□□□□ -0.94
NUP54-201ENST00000264883 BRK1Q8WUW1 75 aa9.19□□□□□ -0.94
NUP54-201ENST00000264883 LINC00474Q9P2X8 69 aa9.19□□□□□ -0.94
NUP54-201ENST00000264883 TRBV7-6A0A0J9YX20 115 aa9.19□□□□□ -0.94
NUP54-201ENST00000264883 TRBV6-4A0A1B0GX49 114 aa9.19□□□□□ -0.94
NUP54-201ENST00000264883 IBA57-AS1B1ANH7 110 aa9.19□□□□□ -0.94
NUP54-201ENST00000264883 ACANP16112 2415 aa9.18□□□□□ -0.94
NUP54-201ENST00000264883 DEFB114Q30KQ6 69 aa9.18□□□□□ -0.94
NUP54-201ENST00000264883 Q8N814 137 aa9.18□□□□□ -0.94
NUP54-201ENST00000264883 SONP18583 2426 aaKnown RBP9.18□□□□□ -0.94
NUP54-201ENST00000264883 SORL1Q92673 2214 aa9.18□□□□□ -0.94
NUP54-201ENST00000264883 C1orf195Q5TG92 126 aa9.17□□□□□ -0.94
NUP54-201ENST00000264883 V9GYY9 64 aa9.17□□□□□ -0.94
NUP54-201ENST00000264883 MYO9AB2RTY4 2548 aa9.17□□□□□ -0.94
NUP54-201ENST00000264883 TRAV10A0A0B4J240 114 aa9.17□□□□□ -0.94
NUP54-201ENST00000264883 UBE2L6O14933 153 aa9.17□□□□□ -0.94
NUP54-201ENST00000264883 SEC61GP60059 68 aa9.17□□□□□ -0.94
NUP54-201ENST00000264883 Q6ZTI0 123 aa9.17□□□□□ -0.94
NUP54-201ENST00000264883 LINC00482Q8N8I6 264 aa9.17□□□□□ -0.94
NUP54-201ENST00000264883 TRGV1A0A0A0MS02 117 aa9.16□□□□□ -0.94
NUP54-201ENST00000264883 A0A0U1RQV1 116 aa9.16□□□□□ -0.94
NUP54-201ENST00000264883 STHQ8IWL8 128 aa9.16□□□□□ -0.94
NUP54-201ENST00000264883 DEFB136Q30KP8 78 aa9.16□□□□□ -0.94
NUP54-201ENST00000264883 RNASE1P07998 156 aaKnown RBP9.15□□□□□ -0.94
NUP54-201ENST00000264883 NDUFC1O43677 76 aa9.14□□□□□ -0.95
NUP54-201ENST00000264883 LINC01547P58512 204 aaPredicted RBP9.14□□□□□ -0.95
NUP54-201ENST00000264883 C1orf158Q8N1D5 194 aa9.14□□□□□ -0.95
NUP54-201ENST00000264883 NOTCH2Q04721 2471 aa9.14□□□□□ -0.95
NUP54-201ENST00000264883 IGKV3OR2-268A0A0C4DH90 116 aa9.14□□□□□ -0.95
NUP54-201ENST00000264883 ATP5EP56381 51 aaPredicted RBP9.14□□□□□ -0.95
NUP54-201ENST00000264883 CMC4P56277 68 aaPredicted RBP9.13□□□□□ -0.95
NUP54-201ENST00000264883 HAMPP81172 84 aa9.13□□□□□ -0.95
NUP54-201ENST00000264883 C18orf65Q6ZTR6 163 aa9.13□□□□□ -0.95
NUP54-201ENST00000264883 OTOGQ6ZRI0 2925 aa9.13□□□□□ -0.95
NUP54-201ENST00000264883 ODF3L2Q3SX64 289 aa9.13□□□□□ -0.95
NUP54-201ENST00000264883 Q6ZQT0 140 aa9.12□□□□□ -0.95
NUP54-201ENST00000264883 ANK3Q12955 4377 aaKnown RBP9.11□□□□□ -0.95
NUP54-201ENST00000264883 BAHCC1Q9P281 2608 aa9.1□□□□□ -0.95
NUP54-201ENST00000264883 NANOS2P60321 138 aaKnown RBP9.1□□□□□ -0.95
NUP54-201ENST00000264883 Q6ZVQ6 151 aa9.1□□□□□ -0.95
NUP54-201ENST00000264883 C16orf74Q96GX8 76 aa9.1□□□□□ -0.95
NUP54-201ENST00000264883 MTORP42345 2549 aa9.1□□□□□ -0.95
NUP54-201ENST00000264883 IGHV3OR16-9A0A0B4J2B5 98 aa9.09□□□□□ -0.95
NUP54-201ENST00000264883 MIFP14174 115 aa9.09□□□□□ -0.95
NUP54-201ENST00000264883 KHDC1LQ5JSQ8 128 aa9.09□□□□□ -0.95
NUP54-201ENST00000264883 C11orf68Q9H3H3 251 aaKnown RBP9.09□□□□□ -0.95
NUP54-201ENST00000264883 TM2D3Q9BRN9 247 aa9.09□□□□□ -0.95
NUP54-201ENST00000264883 NF1P21359 2839 aa9.09□□□□□ -0.95
NUP54-201ENST00000264883 LOC110117498A0A087WWA1 95 aa9.08□□□□□ -0.96
NUP54-201ENST00000264883 A0A087WZ39 114 aa9.08□□□□□ -0.96
NUP54-201ENST00000264883 M0R2N4 97 aa9.08□□□□□ -0.96
NUP54-201ENST00000264883 PRR3P79522 188 aaKnown RBP9.08□□□□□ -0.96
NUP54-201ENST00000264883 Q8N3U1 123 aa9.08□□□□□ -0.96
NUP54-201ENST00000264883 MPLKIPQ8TAP9 179 aa9.08□□□□□ -0.96
NUP54-201ENST00000264883 TRBV7-4A0A0J9YYF1 115 aa9.07□□□□□ -0.96
NUP54-201ENST00000264883 CXCL6P80162 114 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms