RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 NDUFA1O15239 70 aa6.99□□□□□ -1.29
CCDC40-212ENST00000574799 C5orf56Q8N8D9 126 aa6.99□□□□□ -1.29
CCDC40-212ENST00000574799 OVOL2Q9BRP0 275 aa6.99□□□□□ -1.29
CCDC40-212ENST00000574799 IGHV4-38-2P0DP08 117 aa6.98□□□□□ -1.29
CCDC40-212ENST00000574799 RPL36AP83881 106 aaKnown RBP6.98□□□□□ -1.29
CCDC40-212ENST00000574799 HIST2H2BCQ6DN03 193 aa6.98□□□□□ -1.29
CCDC40-212ENST00000574799 HIST2H2BDQ6DRA6 164 aa6.98□□□□□ -1.29
CCDC40-212ENST00000574799 RPL36ALQ969Q0 106 aaKnown RBP6.98□□□□□ -1.29
CCDC40-212ENST00000574799 PYGO1Q9Y3Y4 419 aa6.98□□□□□ -1.29
CCDC40-212ENST00000574799 TIMM17BO60830 172 aa6.98□□□□□ -1.29
CCDC40-212ENST00000574799 PFN2P35080 140 aa6.98□□□□□ -1.29
CCDC40-212ENST00000574799 WNK1Q9H4A3 2382 aa6.98□□□□□ -1.29
CCDC40-212ENST00000574799 NCR3O14931 201 aa6.98□□□□□ -1.29
CCDC40-212ENST00000574799 C11orf68Q9H3H3 251 aaKnown RBP6.98□□□□□ -1.29
CCDC40-212ENST00000574799 SND1-IT1Q9HBX3 110 aa6.98□□□□□ -1.29
CCDC40-212ENST00000574799 PKIGQ9Y2B9 76 aa6.98□□□□□ -1.29
CCDC40-212ENST00000574799 SLPIP03973 132 aa6.97□□□□□ -1.29
CCDC40-212ENST00000574799 WFDC9Q8NEX5 89 aa6.97□□□□□ -1.29
CCDC40-212ENST00000574799 C9orf85Q96MD7 179 aa6.97□□□□□ -1.29
CCDC40-212ENST00000574799 IGHV3-53P01767 116 aa6.97□□□□□ -1.29
CCDC40-212ENST00000574799 EDN2P20800 178 aa6.97□□□□□ -1.29
CCDC40-212ENST00000574799 S100A7L2Q5SY68 101 aa6.97□□□□□ -1.29
CCDC40-212ENST00000574799 C5orf38Q86SI9 138 aa6.97□□□□□ -1.29
CCDC40-212ENST00000574799 H3BUX3 64 aa6.96□□□□□ -1.29
CCDC40-212ENST00000574799 PRM2P04554 102 aa6.96□□□□□ -1.29
CCDC40-212ENST00000574799 MIR7-3HGQ8N6C7 128 aa6.96□□□□□ -1.3
CCDC40-212ENST00000574799 LINC01600Q96MT4 127 aa6.96□□□□□ -1.3
CCDC40-212ENST00000574799 FAM218AQ96MZ4 157 aa6.96□□□□□ -1.3
CCDC40-212ENST00000574799 LINC00846Q9NV44 126 aa6.96□□□□□ -1.3
CCDC40-212ENST00000574799 KRTAP10-9P60411 292 aa6.96□□□□□ -1.3
CCDC40-212ENST00000574799 ZNF843Q8N446 348 aa6.96□□□□□ -1.3
CCDC40-212ENST00000574799 UBE2D4Q9Y2X8 147 aa6.96□□□□□ -1.3
CCDC40-212ENST00000574799 ZNF415Q09FC8 603 aa6.95□□□□□ -1.3
CCDC40-212ENST00000574799 MTORP42345 2549 aa6.95□□□□□ -1.3
CCDC40-212ENST00000574799 IGHG2P01859 326 aa6.95□□□□□ -1.3
CCDC40-212ENST00000574799 BLCAPP62952 87 aa6.95□□□□□ -1.3
CCDC40-212ENST00000574799 ITPR3Q14573 2671 aa6.94□□□□□ -1.3
CCDC40-212ENST00000574799 FAM236DA0A1B0GTK5 79 aa6.94□□□□□ -1.3
CCDC40-212ENST00000574799 FAM236CP0DP71 79 aa6.94□□□□□ -1.3
CCDC40-212ENST00000574799 DEFB131AP59861 70 aa6.94□□□□□ -1.3
CCDC40-212ENST00000574799 CCL19Q99731 98 aa6.94□□□□□ -1.3
CCDC40-212ENST00000574799 UBL5Q9BZL1 73 aa6.94□□□□□ -1.3
CCDC40-212ENST00000574799 FAM222AQ5U5X8 452 aa6.94□□□□□ -1.3
CCDC40-212ENST00000574799 Q6JHZ5 121 aa6.94□□□□□ -1.3
CCDC40-212ENST00000574799 KRTAP1-3Q8IUG1 177 aa6.94□□□□□ -1.3
CCDC40-212ENST00000574799 FAM19A4Q96LR4 140 aa6.94□□□□□ -1.3
CCDC40-212ENST00000574799 CYSTM1Q9H1C7 97 aa6.94□□□□□ -1.3
CCDC40-212ENST00000574799 ITPR2Q14571 2701 aa6.94□□□□□ -1.3
CCDC40-212ENST00000574799 ABCA12Q86UK0 2595 aa6.94□□□□□ -1.3
CCDC40-212ENST00000574799 COX6A2Q02221 97 aa6.94□□□□□ -1.3
CCDC40-212ENST00000574799 C2orf48Q96LS8 159 aa6.94□□□□□ -1.3
CCDC40-212ENST00000574799 Q9UF83 564 aa6.94□□□□□ -1.3
CCDC40-212ENST00000574799 HAMPP81172 84 aa6.93□□□□□ -1.3
CCDC40-212ENST00000574799 RBM3P98179 157 aaKnown RBP6.93□□□□□ -1.3
CCDC40-212ENST00000574799 ENHOQ6UWT2 76 aa6.93□□□□□ -1.3
CCDC40-212ENST00000574799 SOSTDC1Q6X4U4 206 aa6.93□□□□□ -1.3
CCDC40-212ENST00000574799 H0YGX0 51 aa6.93□□□□□ -1.3
CCDC40-212ENST00000574799 HILS1P60008 231 aa6.93□□□□□ -1.3
CCDC40-212ENST00000574799 WFDC11Q8NEX6 87 aa6.93□□□□□ -1.3
CCDC40-212ENST00000574799 PIMREGQ9BSJ6 248 aa6.93□□□□□ -1.3
CCDC40-212ENST00000574799 ORMDL1Q9P0S3 153 aa6.93□□□□□ -1.3
CCDC40-212ENST00000574799 CFHR3Q02985 330 aa6.93□□□□□ -1.3
CCDC40-212ENST00000574799 APRG1Q8IVJ8 170 aa6.93□□□□□ -1.3
CCDC40-212ENST00000574799 OTOGQ6ZRI0 2925 aa6.93□□□□□ -1.3
CCDC40-212ENST00000574799 A0A087WYN8 130 aa6.92□□□□□ -1.3
CCDC40-212ENST00000574799 TRGV1A0A0A0MS02 117 aa6.92□□□□□ -1.3
CCDC40-212ENST00000574799 PSMB8P28062 276 aa6.92□□□□□ -1.3
CCDC40-212ENST00000574799 ANK2Q01484 3957 aa6.91□□□□□ -1.3
CCDC40-212ENST00000574799 SMIM11BQ8TCY0 68 aa6.91□□□□□ -1.3
CCDC40-212ENST00000574799 MRAPQ8TCY5 172 aa6.91□□□□□ -1.3
CCDC40-212ENST00000574799 CHCHD7Q9BUK0 85 aa6.91□□□□□ -1.3
CCDC40-212ENST00000574799 NDUFC2O95298 119 aa6.91□□□□□ -1.3
CCDC40-212ENST00000574799 GCN1Q92616 2671 aaKnown RBP6.91□□□□□ -1.3
CCDC40-212ENST00000574799 A6NDX4 124 aa6.91□□□□□ -1.3
CCDC40-212ENST00000574799 A0A0U1RQV1 116 aa6.9□□□□□ -1.3
CCDC40-212ENST00000574799 PF4P02776 101 aa6.9□□□□□ -1.3
CCDC40-212ENST00000574799 LINC00242Q5T6M2 205 aa6.9□□□□□ -1.3
CCDC40-212ENST00000574799 CMYA5Q8N3K9 4069 aa6.9□□□□□ -1.3
CCDC40-212ENST00000574799 BRK1Q8WUW1 75 aa6.9□□□□□ -1.3
CCDC40-212ENST00000574799 LAMTOR3Q9UHA4 124 aa6.9□□□□□ -1.3
CCDC40-212ENST00000574799 FSHBP01225 129 aa6.9□□□□□ -1.31
CCDC40-212ENST00000574799 TMEM86BQ8N661 226 aa6.9□□□□□ -1.31
CCDC40-212ENST00000574799 DYNLRB2Q8TF09 96 aa6.9□□□□□ -1.31
CCDC40-212ENST00000574799 SMIM1B2RUZ4 78 aa6.89□□□□□ -1.31
CCDC40-212ENST00000574799 FAM19A1Q7Z5A9 133 aa6.89□□□□□ -1.31
CCDC40-212ENST00000574799 UBE2E2Q96LR5 201 aa6.89□□□□□ -1.31
CCDC40-212ENST00000574799 MSMBP08118 114 aa6.89□□□□□ -1.31
CCDC40-212ENST00000574799 FHL2Q14192 279 aa6.89□□□□□ -1.31
CCDC40-212ENST00000574799 C6orf226Q5I0X4 101 aa6.89□□□□□ -1.31
CCDC40-212ENST00000574799 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.89□□□□□ -1.31
CCDC40-212ENST00000574799 MAPK1IP1LQ8NDC0 245 aa6.89□□□□□ -1.31
CCDC40-212ENST00000574799 UPK3BQ9BT76 320 aa6.89□□□□□ -1.31
CCDC40-212ENST00000574799 SNURFQ9Y675 71 aa6.89□□□□□ -1.31
CCDC40-212ENST00000574799 RPL28P46779 137 aaKnown RBP6.89□□□□□ -1.31
CCDC40-212ENST00000574799 Q6ZSN1 163 aa6.89□□□□□ -1.31
CCDC40-212ENST00000574799 LINC01561Q8N1V8 128 aa6.89□□□□□ -1.31
CCDC40-212ENST00000574799 NAV2Q8IVL1 2488 aa6.89□□□□□ -1.31
CCDC40-212ENST00000574799 WIPF1O43516 503 aa6.88□□□□□ -1.31
CCDC40-212ENST00000574799 LINC00337Q8N6G1 96 aa6.88□□□□□ -1.31
CCDC40-212ENST00000574799 XCL2Q9UBD3 114 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms