RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 TRBV20-1A0A075B6N2 111 aa0.97□□□□□ -2.25
SCFD1-221ENST00000556534 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.97□□□□□ -2.25
SCFD1-221ENST00000556534 M0R2P5 195 aa0.97□□□□□ -2.25
SCFD1-221ENST00000556534 RBP4P02753 201 aa0.97□□□□□ -2.25
SCFD1-221ENST00000556534 PRB4P10163 310 aaPredicted RBP0.97□□□□□ -2.25
SCFD1-221ENST00000556534 RPS25P62851 125 aaKnown RBP0.97□□□□□ -2.25
SCFD1-221ENST00000556534 LINC00575Q6W349 94 aa0.97□□□□□ -2.25
SCFD1-221ENST00000556534 Q8N6K4 173 aa0.97□□□□□ -2.25
SCFD1-221ENST00000556534 TPT1P8Q9HAU6 139 aa0.97□□□□□ -2.25
SCFD1-221ENST00000556534 MRPL36Q9P0J6 103 aaKnown RBP0.97□□□□□ -2.25
SCFD1-221ENST00000556534 HERC1Q15751 4861 aa0.97□□□□□ -2.25
SCFD1-221ENST00000556534 HERC2O95714 4834 aa0.97□□□□□ -2.25
SCFD1-221ENST00000556534 MYO7AQ13402 2215 aa0.96□□□□□ -2.26
SCFD1-221ENST00000556534 CCDC171Q6TFL3 1326 aa0.96□□□□□ -2.26
SCFD1-221ENST00000556534 MYH7P12883 1935 aa0.96□□□□□ -2.26
SCFD1-221ENST00000556534 A0A0G2JMM0 328 aa0.96□□□□□ -2.26
SCFD1-221ENST00000556534 NBDYA0A0U1RRE5 68 aa0.96□□□□□ -2.26
SCFD1-221ENST00000556534 K7ERU9 68 aa0.96□□□□□ -2.26
SCFD1-221ENST00000556534 NPFFO15130 113 aa0.96□□□□□ -2.26
SCFD1-221ENST00000556534 TPST1O60507 370 aa0.96□□□□□ -2.26
SCFD1-221ENST00000556534 PITX3O75364 302 aa0.96□□□□□ -2.26
SCFD1-221ENST00000556534 NCR2O95944 276 aa0.96□□□□□ -2.26
SCFD1-221ENST00000556534 ATP6V0E2Q8NHE4 81 aa0.96□□□□□ -2.26
SCFD1-221ENST00000556534 PFDN5Q99471 154 aa0.96□□□□□ -2.26
SCFD1-221ENST00000556534 ERG28Q9UKR5 140 aa0.96□□□□□ -2.26
SCFD1-221ENST00000556534 NOP16Q9Y3C1 178 aaKnown RBP0.96□□□□□ -2.26
SCFD1-221ENST00000556534 CSMD3Q7Z407 3707 aa0.96□□□□□ -2.26
SCFD1-221ENST00000556534 MUC22E2RYF6 1773 aaPredicted RBP0.96□□□□□ -2.26
SCFD1-221ENST00000556534 CXorf51AA0A1B0GTR3 108 aa0.95□□□□□ -2.26
SCFD1-221ENST00000556534 ZNF670-ZNF695F2Z2N8 137 aa0.95□□□□□ -2.26
SCFD1-221ENST00000556534 J3QR89 54 aa0.95□□□□□ -2.26
SCFD1-221ENST00000556534 YPEL1O60688 119 aa0.95□□□□□ -2.26
SCFD1-221ENST00000556534 IQCJQ1A5X6 159 aa0.95□□□□□ -2.26
SCFD1-221ENST00000556534 CCDC58Q4VC31 144 aa0.95□□□□□ -2.26
SCFD1-221ENST00000556534 ATP11AUNQ6ZP68 121 aa0.95□□□□□ -2.26
SCFD1-221ENST00000556534 DEFB124Q8NES8 71 aa0.95□□□□□ -2.26
SCFD1-221ENST00000556534 DMAC1Q96GE9 116 aa0.95□□□□□ -2.26
SCFD1-221ENST00000556534 TAS2R8Q9NYW2 309 aa0.95□□□□□ -2.26
SCFD1-221ENST00000556534 MRPL35Q9NZE8 188 aaKnown RBP0.95□□□□□ -2.26
SCFD1-221ENST00000556534 SPAG17Q6Q759 2223 aa0.95□□□□□ -2.26
SCFD1-221ENST00000556534 PLXNB2O15031 1838 aa0.94□□□□□ -2.26
SCFD1-221ENST00000556534 TRAV17A0A0B4J275 112 aa0.94□□□□□ -2.26
SCFD1-221ENST00000556534 LOC101927531A0A1B0GV80 90 aa0.94□□□□□ -2.26
SCFD1-221ENST00000556534 SPAARA0A1B0GVQ0 90 aa0.94□□□□□ -2.26
SCFD1-221ENST00000556534 TFF1P04155 84 aa0.94□□□□□ -2.26
SCFD1-221ENST00000556534 POLR2JP52435 117 aaKnown RBP0.94□□□□□ -2.26
SCFD1-221ENST00000556534 SARNPP82979 210 aaKnown RBP0.94□□□□□ -2.26
SCFD1-221ENST00000556534 MIC13Q5XKP0 118 aa0.94□□□□□ -2.26
SCFD1-221ENST00000556534 Q6ZQY7 126 aa0.94□□□□□ -2.26
SCFD1-221ENST00000556534 CCL19Q99731 98 aa0.94□□□□□ -2.26
SCFD1-221ENST00000556534 SPEF2Q9C093 1822 aa0.94□□□□□ -2.26
SCFD1-221ENST00000556534 MYH9P35579 1960 aaKnown RBP0.94□□□□□ -2.26
SCFD1-221ENST00000556534 STAB2Q8WWQ8 2551 aa0.94□□□□□ -2.26
SCFD1-221ENST00000556534 MED12Q93074 2177 aa0.93□□□□□ -2.26
SCFD1-221ENST00000556534 DAPK1P53355 1430 aa0.93□□□□□ -2.26
SCFD1-221ENST00000556534 J3QLW9 94 aa0.93□□□□□ -2.26
SCFD1-221ENST00000556534 FXYD3Q14802 87 aa0.93□□□□□ -2.26
SCFD1-221ENST00000556534 UNQ5815/PRO19632Q6UWF5 114 aa0.93□□□□□ -2.26
SCFD1-221ENST00000556534 Q86TA4 180 aa0.93□□□□□ -2.26
SCFD1-221ENST00000556534 DYNLRB2Q8TF09 96 aa0.93□□□□□ -2.26
SCFD1-221ENST00000556534 SRRM2Q9UQ35 2752 aaKnown RBP0.92□□□□□ -2.26
SCFD1-221ENST00000556534 LYSTQ99698 3801 aa0.92□□□□□ -2.26
SCFD1-221ENST00000556534 AHNAK2Q8IVF2 5795 aa0.92□□□□□ -2.26
SCFD1-221ENST00000556534 TRAV2A0A0B4J234 112 aa0.92□□□□□ -2.26
SCFD1-221ENST00000556534 TRBV10-1A0A0K0K1A3 114 aa0.92□□□□□ -2.26
SCFD1-221ENST00000556534 COPZ1P61923 177 aa0.92□□□□□ -2.26
SCFD1-221ENST00000556534 PRB3Q04118 309 aaPredicted RBP0.92□□□□□ -2.26
SCFD1-221ENST00000556534 XAF1Q6GPH4 301 aa0.92□□□□□ -2.26
SCFD1-221ENST00000556534 C5orf56Q8N8D9 126 aa0.92□□□□□ -2.26
SCFD1-221ENST00000556534 PPDPFLQ8WWR9 84 aa0.92□□□□□ -2.26
SCFD1-221ENST00000556534 LINC00208Q96KT6 92 aa0.92□□□□□ -2.26
SCFD1-221ENST00000556534 SDF2Q99470 211 aa0.92□□□□□ -2.26
SCFD1-221ENST00000556534 VPS25Q9BRG1 176 aa0.92□□□□□ -2.26
SCFD1-221ENST00000556534 ATG5Q9H1Y0 275 aa0.92□□□□□ -2.26
SCFD1-221ENST00000556534 PAIP2BQ9ULR5 123 aaKnown RBP0.92□□□□□ -2.26
SCFD1-221ENST00000556534 ABCA13Q86UQ4 5058 aa0.92□□□□□ -2.26
SCFD1-221ENST00000556534 HECTD4Q9Y4D8 3996 aa0.92□□□□□ -2.26
SCFD1-221ENST00000556534 KNTC1P50748 2209 aa0.92□□□□□ -2.26
SCFD1-221ENST00000556534 A0A1B0GUL6 1792 aa0.91□□□□□ -2.26
SCFD1-221ENST00000556534 RGPD2P0DJD1 1756 aa0.91□□□□□ -2.26
SCFD1-221ENST00000556534 CMYA5Q8N3K9 4069 aa0.91□□□□□ -2.26
SCFD1-221ENST00000556534 TRBV30A0A0K0K1B3 111 aa0.91□□□□□ -2.26
SCFD1-221ENST00000556534 HIGD1CA8MV81 97 aa0.91□□□□□ -2.26
SCFD1-221ENST00000556534 SLC25A6P12236 298 aa0.91□□□□□ -2.26
SCFD1-221ENST00000556534 Q6ZUT4 128 aa0.91□□□□□ -2.26
SCFD1-221ENST00000556534 SAR1AQ9NR31 198 aa0.91□□□□□ -2.26
SCFD1-221ENST00000556534 DMBT1Q9UGM3 2413 aaPredicted RBP0.91□□□□□ -2.26
SCFD1-221ENST00000556534 PATJQ8NI35 1801 aa0.91□□□□□ -2.26
SCFD1-221ENST00000556534 FRAS1Q86XX4 4008 aa0.91□□□□□ -2.26
SCFD1-221ENST00000556534 K7EIL1 84 aa0.9□□□□□ -2.27
SCFD1-221ENST00000556534 CCKP06307 115 aa0.9□□□□□ -2.27
SCFD1-221ENST00000556534 LINC01545Q5VT33 79 aa0.9□□□□□ -2.27
SCFD1-221ENST00000556534 TSC22D3Q99576 134 aa0.9□□□□□ -2.27
SCFD1-221ENST00000556534 GOLGA4Q13439 2230 aaKnown RBP0.9□□□□□ -2.27
SCFD1-221ENST00000556534 IBTKQ9P2D0 1353 aaPredicted RBP0.9□□□□□ -2.27
SCFD1-221ENST00000556534 DNAH1Q9P2D7 4330 aa0.9□□□□□ -2.27
SCFD1-221ENST00000556534 PSME4Q14997 1843 aa0.89□□□□□ -2.27
SCFD1-221ENST00000556534 ESPL1Q14674 2120 aa0.89□□□□□ -2.27
SCFD1-221ENST00000556534 FSIP2Q5CZC0 6907 aa0.89□□□□□ -2.27
SCFD1-221ENST00000556534 PKDREJQ9NTG1 2253 aa0.89□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms