RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 PLXNB2O15031 1838 aa1.38□□□□□ -2.19
SCFD1-208ENST00000553278 MARF1Q9Y4F3 1742 aaKnown RBP1.38□□□□□ -2.19
SCFD1-208ENST00000553278 PDCD11Q14690 1871 aaKnown RBP1.38□□□□□ -2.19
SCFD1-208ENST00000553278 UQCRHLA0A096LP55 91 aa1.38□□□□□ -2.19
SCFD1-208ENST00000553278 SYS1-DBNDD2H3BUS1 97 aa1.38□□□□□ -2.19
SCFD1-208ENST00000553278 GYPAP02724 150 aa1.38□□□□□ -2.19
SCFD1-208ENST00000553278 MYO7BQ6PIF6 2116 aa1.37□□□□□ -2.19
SCFD1-208ENST00000553278 CACNA1CQ13936 2221 aa1.37□□□□□ -2.19
SCFD1-208ENST00000553278 A0A0D9SFI3 127 aa1.36□□□□□ -2.19
SCFD1-208ENST00000553278 PSMG4Q5JS54 123 aa1.36□□□□□ -2.19
SCFD1-208ENST00000553278 PRO1933Q9H354 126 aa1.35□□□□□ -2.19
SCFD1-208ENST00000553278 PLAC8Q9NZF1 115 aa1.35□□□□□ -2.19
SCFD1-208ENST00000553278 LRP6O75581 1613 aa1.35□□□□□ -2.19
SCFD1-208ENST00000553278 ARHGEF12Q9NZN5 1544 aa1.35□□□□□ -2.19
SCFD1-208ENST00000553278 MEGF8Q7Z7M0 2845 aa1.34□□□□□ -2.19
SCFD1-208ENST00000553278 ERCC6L2Q5T890 1561 aa1.34□□□□□ -2.19
SCFD1-208ENST00000553278 CACNA1HO95180 2353 aa1.34□□□□□ -2.19
SCFD1-208ENST00000553278 FAM208BQ5VWN6 2430 aa1.34□□□□□ -2.19
SCFD1-208ENST00000553278 AHCTF1Q8WYP5 2266 aa1.34□□□□□ -2.2
SCFD1-208ENST00000553278 C10orf113Q5VZT2 155 aa1.33□□□□□ -2.2
SCFD1-208ENST00000553278 LINC00846Q9NV44 126 aa1.33□□□□□ -2.2
SCFD1-208ENST00000553278 CLTCQ00610 1675 aaKnown RBP1.32□□□□□ -2.2
SCFD1-208ENST00000553278 C7orf77A4D0Y5 90 aa1.32□□□□□ -2.2
SCFD1-208ENST00000553278 FBN2P35556 2912 aa1.32□□□□□ -2.2
SCFD1-208ENST00000553278 NUP188Q5SRE5 1749 aa1.32□□□□□ -2.2
SCFD1-208ENST00000553278 CNFNQ9BYD5 112 aa1.31□□□□□ -2.2
SCFD1-208ENST00000553278 RB1CC1Q8TDY2 1594 aa1.3□□□□□ -2.2
SCFD1-208ENST00000553278 KIAA1551Q9HCM1 1747 aa1.3□□□□□ -2.2
SCFD1-208ENST00000553278 TRBV6-1A0A0K0K1D8 114 aa1.3□□□□□ -2.2
SCFD1-208ENST00000553278 FDCSPQ8NFU4 85 aa1.3□□□□□ -2.2
SCFD1-208ENST00000553278 SPCS1Q9Y6A9 102 aa1.3□□□□□ -2.2
SCFD1-208ENST00000553278 EPRSP07814 1512 aaKnown RBP1.3□□□□□ -2.2
SCFD1-208ENST00000553278 KCPQ6ZWJ8 1503 aa1.3□□□□□ -2.2
SCFD1-208ENST00000553278 ABCC2Q92887 1545 aa1.3□□□□□ -2.2
SCFD1-208ENST00000553278 BCE1O60756 84 aa1.29□□□□□ -2.2
SCFD1-208ENST00000553278 ZNF720Q7Z2F6 126 aa1.29□□□□□ -2.2
SCFD1-208ENST00000553278 NOTCH1P46531 2555 aa1.29□□□□□ -2.2
SCFD1-208ENST00000553278 A0A087WVE0 104 aa1.28□□□□□ -2.2
SCFD1-208ENST00000553278 PVALEFA0A1B0GWK0 134 aa1.28□□□□□ -2.2
SCFD1-208ENST00000553278 FANCAO15360 1455 aa1.28□□□□□ -2.2
SCFD1-208ENST00000553278 ZFHX3Q15911 3703 aa1.27□□□□□ -2.21
SCFD1-208ENST00000553278 C1orf167Q5SNV9 1468 aa1.27□□□□□ -2.21
SCFD1-208ENST00000553278 NRXN1Q9ULB1 1477 aa1.27□□□□□ -2.21
SCFD1-208ENST00000553278 PYY3Q5JQD4 70 aa1.27□□□□□ -2.21
SCFD1-208ENST00000553278 KRTAP19-3Q7Z4W3 81 aa1.27□□□□□ -2.21
SCFD1-208ENST00000553278 C9orf62Q8N4C0 152 aa1.27□□□□□ -2.21
SCFD1-208ENST00000553278 LINC01600Q96MT4 127 aa1.27□□□□□ -2.21
SCFD1-208ENST00000553278 C20orf78Q9BR46 151 aa1.27□□□□□ -2.21
SCFD1-208ENST00000553278 APCP25054 2843 aa1.27□□□□□ -2.21
SCFD1-208ENST00000553278 TTC28Q96AY4 2481 aa1.27□□□□□ -2.21
SCFD1-208ENST00000553278 MON2Q7Z3U7 1717 aa1.26□□□□□ -2.21
SCFD1-208ENST00000553278 ZNF469Q96JG9 3925 aaPredicted RBP1.26□□□□□ -2.21
SCFD1-208ENST00000553278 BDP1A6H8Y1 2624 aa1.26□□□□□ -2.21
SCFD1-208ENST00000553278 ATP10BO94823 1461 aa1.26□□□□□ -2.21
SCFD1-208ENST00000553278 ABCC3O15438 1527 aa1.25□□□□□ -2.21
SCFD1-208ENST00000553278 H3BQF6 201 aa1.25□□□□□ -2.21
SCFD1-208ENST00000553278 ETDBQ3ZM63 59 aa1.25□□□□□ -2.21
SCFD1-208ENST00000553278 PRO0255Q9UI72 69 aa1.25□□□□□ -2.21
SCFD1-208ENST00000553278 ARMS2P0C7Q2 107 aa1.24□□□□□ -2.21
SCFD1-208ENST00000553278 SMIM11AP58511 58 aa1.24□□□□□ -2.21
SCFD1-208ENST00000553278 HMGN3Q15651 99 aa1.24□□□□□ -2.21
SCFD1-208ENST00000553278 POLQO75417 2590 aa1.24□□□□□ -2.21
SCFD1-208ENST00000553278 POLA1P09884 1462 aaPredicted RBP1.24□□□□□ -2.21
SCFD1-208ENST00000553278 RGPD4Q7Z3J3 1758 aa1.24□□□□□ -2.21
SCFD1-208ENST00000553278 LAMC1P11047 1609 aa1.23□□□□□ -2.21
SCFD1-208ENST00000553278 LCN9Q8WX39 176 aa1.23□□□□□ -2.21
SCFD1-208ENST00000553278 TP53AIP1Q9HCN2 124 aa1.23□□□□□ -2.21
SCFD1-208ENST00000553278 CEP162Q5TB80 1403 aa1.23□□□□□ -2.21
SCFD1-208ENST00000553278 K7EP34 96 aa1.22□□□□□ -2.21
SCFD1-208ENST00000553278 HIGD1BQ9P298 99 aa1.22□□□□□ -2.21
SCFD1-208ENST00000553278 FCGBPQ9Y6R7 5405 aaPredicted RBP1.22□□□□□ -2.21
SCFD1-208ENST00000553278 IQSEC2Q5JU85 1478 aa1.22□□□□□ -2.21
SCFD1-208ENST00000553278 EDC4Q6P2E9 1401 aaKnown RBP1.22□□□□□ -2.21
SCFD1-208ENST00000553278 GOLGA4Q13439 2230 aaKnown RBP1.21□□□□□ -2.21
SCFD1-208ENST00000553278 F8WEM9 126 aa1.21□□□□□ -2.22
SCFD1-208ENST00000553278 DNAJC13O75165 2243 aa1.21□□□□□ -2.22
SCFD1-208ENST00000553278 PEA15Q15121 130 aa1.2□□□□□ -2.22
SCFD1-208ENST00000553278 XRN1Q8IZH2 1706 aaKnown RBP1.2□□□□□ -2.22
SCFD1-208ENST00000553278 ABCA12Q86UK0 2595 aa1.19□□□□□ -2.22
SCFD1-208ENST00000553278 NLRP1Q9C000 1473 aa1.19□□□□□ -2.22
SCFD1-208ENST00000553278 RGPD3A6NKT7 1758 aaPredicted RBP1.19□□□□□ -2.22
SCFD1-208ENST00000553278 F8P00451 2351 aa1.19□□□□□ -2.22
SCFD1-208ENST00000553278 H0Y9P7 68 aa1.19□□□□□ -2.22
SCFD1-208ENST00000553278 SPINK6Q6UWN8 80 aa1.19□□□□□ -2.22
SCFD1-208ENST00000553278 ALKAL2Q6UX46 152 aa1.19□□□□□ -2.22
SCFD1-208ENST00000553278 KNDC1Q76NI1 1749 aa1.19□□□□□ -2.22
SCFD1-208ENST00000553278 DEFB107AQ8IZN7 70 aa1.19□□□□□ -2.22
SCFD1-208ENST00000553278 S100A16Q96FQ6 103 aaKnown RBP1.19□□□□□ -2.22
SCFD1-208ENST00000553278 PSENENQ9NZ42 101 aa1.19□□□□□ -2.22
SCFD1-208ENST00000553278 PLIN4Q96Q06 1357 aa1.19□□□□□ -2.22
SCFD1-208ENST00000553278 MYH4Q9Y623 1939 aa1.19□□□□□ -2.22
SCFD1-208ENST00000553278 LEPROTL1O95214 131 aa1.18□□□□□ -2.22
SCFD1-208ENST00000553278 CYB5AP00167 134 aa1.18□□□□□ -2.22
SCFD1-208ENST00000553278 GNGT1P63211 74 aa1.18□□□□□ -2.22
SCFD1-208ENST00000553278 PIGYQ3MUY2 71 aa1.18□□□□□ -2.22
SCFD1-208ENST00000553278 MYO3AQ8NEV4 1616 aa1.18□□□□□ -2.22
SCFD1-208ENST00000553278 PLCE1Q9P212 2302 aa1.17□□□□□ -2.22
SCFD1-208ENST00000553278 TRBV7-4A0A0J9YYF1 115 aa1.17□□□□□ -2.22
SCFD1-208ENST00000553278 D6R8Y8 96 aa1.17□□□□□ -2.22
SCFD1-208ENST00000553278 I3L2K1 104 aa1.17□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms