RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 PROK2Q9HC23 129 aa3.24□□□□□ -1.89
VPS29-210ENST00000552130 A0A087WTM6 91 aa3.23□□□□□ -1.89
VPS29-210ENST00000552130 RGPD1P0DJD0 1748 aa3.23□□□□□ -1.89
VPS29-210ENST00000552130 COX8AP10176 69 aa3.23□□□□□ -1.89
VPS29-210ENST00000552130 Q6JHZ5 121 aa3.23□□□□□ -1.89
VPS29-210ENST00000552130 LOC110117498A0A087WWA1 95 aa3.22□□□□□ -1.89
VPS29-210ENST00000552130 M0R3E3 92 aa3.22□□□□□ -1.89
VPS29-210ENST00000552130 GCHFRP30047 84 aa3.22□□□□□ -1.89
VPS29-210ENST00000552130 BAGE2Q86Y30 109 aa3.22□□□□□ -1.89
VPS29-210ENST00000552130 ASXL1Q8IXJ9 1541 aa3.22□□□□□ -1.89
VPS29-210ENST00000552130 UQCR11O14957 56 aa3.21□□□□□ -1.9
VPS29-210ENST00000552130 HCP5Q6MZN7 132 aa3.21□□□□□ -1.9
VPS29-210ENST00000552130 CYYR1Q96J86 154 aa3.21□□□□□ -1.9
VPS29-210ENST00000552130 WFDC6Q9BQY6 131 aa3.21□□□□□ -1.9
VPS29-210ENST00000552130 SDK1Q7Z5N4 2213 aa3.2□□□□□ -1.9
VPS29-210ENST00000552130 ITSN1Q15811 1721 aa3.2□□□□□ -1.9
VPS29-210ENST00000552130 CTXND1A0A1B0GTU2 59 aa3.2□□□□□ -1.9
VPS29-210ENST00000552130 Q6ZRN7 208 aaPredicted RBP3.2□□□□□ -1.9
VPS29-210ENST00000552130 ZNF625Q96I27 306 aaPredicted RBP3.2□□□□□ -1.9
VPS29-210ENST00000552130 LINC00208Q96KT6 92 aa3.2□□□□□ -1.9
VPS29-210ENST00000552130 UBE2D4Q9Y2X8 147 aa3.2□□□□□ -1.9
VPS29-210ENST00000552130 DNAJC13O75165 2243 aa3.19□□□□□ -1.9
VPS29-210ENST00000552130 LCE1CQ5T751 118 aa3.19□□□□□ -1.9
VPS29-210ENST00000552130 LCE1BQ5T7P3 118 aa3.19□□□□□ -1.9
VPS29-210ENST00000552130 BAGE3Q86Y29 109 aa3.19□□□□□ -1.9
VPS29-210ENST00000552130 FDCSPQ8NFU4 85 aa3.19□□□□□ -1.9
VPS29-210ENST00000552130 HILPDAQ9Y5L2 63 aa3.19□□□□□ -1.9
VPS29-210ENST00000552130 TIAM1Q13009 1591 aa3.19□□□□□ -1.9
VPS29-210ENST00000552130 SCN7AQ01118 1682 aa3.19□□□□□ -1.9
VPS29-210ENST00000552130 ADGRB2O60241 1585 aa3.18□□□□□ -1.9
VPS29-210ENST00000552130 MYO7AQ13402 2215 aa3.18□□□□□ -1.9
VPS29-210ENST00000552130 IFI27P40305 119 aaPredicted RBP3.18□□□□□ -1.9
VPS29-210ENST00000552130 SMIM5Q71RC9 77 aa3.18□□□□□ -1.9
VPS29-210ENST00000552130 ICE1Q9Y2F5 2266 aa3.18□□□□□ -1.9
VPS29-210ENST00000552130 LOC285556D6RIA3 1793 aa3.17□□□□□ -1.9
VPS29-210ENST00000552130 C1orf167Q5SNV9 1468 aa3.17□□□□□ -1.9
VPS29-210ENST00000552130 TNRC6BQ9UPQ9 1833 aaKnown RBP3.17□□□□□ -1.9
VPS29-210ENST00000552130 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.17□□□□□ -1.9
VPS29-210ENST00000552130 A0A087WVE0 104 aa3.17□□□□□ -1.9
VPS29-210ENST00000552130 MGPP08493 103 aa3.17□□□□□ -1.9
VPS29-210ENST00000552130 ATP5EP2Q5VTU8 51 aa3.17□□□□□ -1.9
VPS29-210ENST00000552130 URB2Q14146 1524 aaKnown RBP3.16□□□□□ -1.9
VPS29-210ENST00000552130 ZNF137PP52743 207 aa3.16□□□□□ -1.9
VPS29-210ENST00000552130 SNURFQ9Y675 71 aa3.16□□□□□ -1.9
VPS29-210ENST00000552130 C3orf79P0CE67 100 aa3.15□□□□□ -1.91
VPS29-210ENST00000552130 LINC00846Q9NV44 126 aa3.15□□□□□ -1.91
VPS29-210ENST00000552130 PLXNC1O60486 1568 aa3.15□□□□□ -1.91
VPS29-210ENST00000552130 ABCA9Q8IUA7 1624 aa3.15□□□□□ -1.91
VPS29-210ENST00000552130 COL5A1P20908 1838 aaPredicted RBP3.14□□□□□ -1.91
VPS29-210ENST00000552130 H3BVH4 76 aa3.14□□□□□ -1.91
VPS29-210ENST00000552130 Q96NJ1 140 aa3.14□□□□□ -1.91
VPS29-210ENST00000552130 RAPGEF6Q8TEU7 1601 aa3.14□□□□□ -1.91
VPS29-210ENST00000552130 MED13LQ71F56 2210 aa3.13□□□□□ -1.91
VPS29-210ENST00000552130 TRGV2A0A075B6R0 118 aa3.13□□□□□ -1.91
VPS29-210ENST00000552130 GDF5OSQ5U4N7 250 aa3.13□□□□□ -1.91
VPS29-210ENST00000552130 INTS1Q8N201 2190 aaKnown RBP3.12□□□□□ -1.91
VPS29-210ENST00000552130 TRGV1A0A0A0MS02 117 aa3.12□□□□□ -1.91
VPS29-210ENST00000552130 IGKV4-1P06312 121 aa3.12□□□□□ -1.91
VPS29-210ENST00000552130 KRTAP10-1P60331 282 aa3.12□□□□□ -1.91
VPS29-210ENST00000552130 SPRR4Q96PI1 79 aa3.12□□□□□ -1.91
VPS29-210ENST00000552130 MAP2P11137 1827 aaKnown RBP3.12□□□□□ -1.91
VPS29-210ENST00000552130 TRAV1-2A0A0B4J238 106 aa3.11□□□□□ -1.91
VPS29-210ENST00000552130 HCRTO43612 131 aa3.11□□□□□ -1.91
VPS29-210ENST00000552130 GNG13Q9P2W3 67 aa3.11□□□□□ -1.91
VPS29-210ENST00000552130 SIPA1L3O60292 1781 aaPredicted RBP3.1□□□□□ -1.91
VPS29-210ENST00000552130 TRBV7-4A0A0J9YYF1 115 aa3.1□□□□□ -1.91
VPS29-210ENST00000552130 CAV3P56539 151 aa3.1□□□□□ -1.91
VPS29-210ENST00000552130 COX17Q14061 63 aa3.1□□□□□ -1.91
VPS29-210ENST00000552130 DEFB107AQ8IZN7 70 aa3.1□□□□□ -1.91
VPS29-210ENST00000552130 SMIM4Q8WVI0 70 aa3.1□□□□□ -1.91
VPS29-210ENST00000552130 PLAC8Q9NZF1 115 aa3.1□□□□□ -1.91
VPS29-210ENST00000552130 NKTRP30414 1462 aaKnown RBP3.09□□□□□ -1.91
VPS29-210ENST00000552130 CD163L1Q9NR16 1453 aa3.09□□□□□ -1.91
VPS29-210ENST00000552130 NCOA6Q14686 2063 aaPredicted RBP3.08□□□□□ -1.92
VPS29-210ENST00000552130 CEP170BQ9Y4F5 1589 aaPredicted RBP3.08□□□□□ -1.92
VPS29-210ENST00000552130 PHRF1Q9P1Y6 1649 aaKnown RBP3.08□□□□□ -1.92
VPS29-210ENST00000552130 S100A3P33764 101 aa3.08□□□□□ -1.92
VPS29-210ENST00000552130 Q6ZQY7 126 aa3.08□□□□□ -1.92
VPS29-210ENST00000552130 CCL19Q99731 98 aa3.08□□□□□ -1.92
VPS29-210ENST00000552130 ANKRD36A6QL64 1941 aa3.08□□□□□ -1.92
VPS29-210ENST00000552130 ATP7BP35670 1465 aa3.08□□□□□ -1.92
VPS29-210ENST00000552130 CDC42BPGQ6DT37 1551 aa3.08□□□□□ -1.92
VPS29-210ENST00000552130 ZNF236Q9UL36 1845 aa3.07□□□□□ -1.92
VPS29-210ENST00000552130 CACNA1GO43497 2377 aa3.07□□□□□ -1.92
VPS29-210ENST00000552130 FXYD6-FXYD2A0A087WZ82 144 aa3.07□□□□□ -1.92
VPS29-210ENST00000552130 A0A1B0GUT8 65 aa3.07□□□□□ -1.92
VPS29-210ENST00000552130 ACYP2P14621 99 aa3.07□□□□□ -1.92
VPS29-210ENST00000552130 ZMYM4Q5VZL5 1548 aa3.07□□□□□ -1.92
VPS29-210ENST00000552130 ABCA6Q8N139 1617 aa3.07□□□□□ -1.92
VPS29-210ENST00000552130 KIF1AQ12756 1690 aa3.07□□□□□ -1.92
VPS29-210ENST00000552130 SHPRHQ149N8 1683 aa3.07□□□□□ -1.92
VPS29-210ENST00000552130 H0Y9P7 68 aa3.06□□□□□ -1.92
VPS29-210ENST00000552130 XRN1Q8IZH2 1706 aaKnown RBP3.06□□□□□ -1.92
VPS29-210ENST00000552130 CRYBG1Q9Y4K1 1723 aa3.06□□□□□ -1.92
VPS29-210ENST00000552130 ABCA1O95477 2261 aa3.05□□□□□ -1.92
VPS29-210ENST00000552130 COL4A1P02462 1669 aa3.05□□□□□ -1.92
VPS29-210ENST00000552130 PIK3C2BO00750 1634 aa3.05□□□□□ -1.92
VPS29-210ENST00000552130 ATXN8Q156A1 80 aa3.05□□□□□ -1.92
VPS29-210ENST00000552130 SPATA8Q6RVD6 105 aa3.05□□□□□ -1.92
VPS29-210ENST00000552130 PRXQ9BXM0 1461 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms