RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 DAND5Q8N907 189 aa11.45□□□□□ -0.58
COL4A1-204ENST00000543140 ZNF625Q96I27 306 aaPredicted RBP11.45□□□□□ -0.58
COL4A1-204ENST00000543140 IGLV4-60A0A075B6I1 120 aa11.45□□□□□ -0.58
COL4A1-204ENST00000543140 A0A096LPF7 62 aa11.44□□□□□ -0.58
COL4A1-204ENST00000543140 SMIM1B2RUZ4 78 aa11.44□□□□□ -0.58
COL4A1-204ENST00000543140 PSMB2P49721 201 aa11.44□□□□□ -0.58
COL4A1-204ENST00000543140 FAM19A3Q7Z5A8 133 aa11.44□□□□□ -0.58
COL4A1-204ENST00000543140 IGLV5-39A0A0G2JS06 123 aa11.43□□□□□ -0.58
COL4A1-204ENST00000543140 APOC4P55056 127 aa11.43□□□□□ -0.58
COL4A1-204ENST00000543140 SH2D6Q7Z4S9 175 aa11.43□□□□□ -0.58
COL4A1-204ENST00000543140 Q9H8V8 135 aa11.43□□□□□ -0.58
COL4A1-204ENST00000543140 NDUFA1O15239 70 aa11.43□□□□□ -0.58
COL4A1-204ENST00000543140 A0A0U1RRA0 63 aa11.42□□□□□ -0.58
COL4A1-204ENST00000543140 H7C423 109 aa11.42□□□□□ -0.58
COL4A1-204ENST00000543140 ATP6V0E2Q8NHE4 81 aa11.42□□□□□ -0.58
COL4A1-204ENST00000543140 IGHV4-28A0A0C4DH34 117 aa11.42□□□□□ -0.58
COL4A1-204ENST00000543140 F5H768 121 aa11.42□□□□□ -0.58
COL4A1-204ENST00000543140 MIAQ16674 131 aa11.42□□□□□ -0.58
COL4A1-204ENST00000543140 SPANXDQ9BXN6 97 aa11.41□□□□□ -0.58
COL4A1-204ENST00000543140 SPANXCQ9NY87 97 aa11.41□□□□□ -0.58
COL4A1-204ENST00000543140 F8W1H4 67 aa11.41□□□□□ -0.58
COL4A1-204ENST00000543140 WFDC9Q8NEX5 89 aa11.41□□□□□ -0.58
COL4A1-204ENST00000543140 PRO0255Q9UI72 69 aa11.41□□□□□ -0.58
COL4A1-204ENST00000543140 IGHV3-33P01772 117 aa11.4□□□□□ -0.58
COL4A1-204ENST00000543140 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.4□□□□□ -0.59
COL4A1-204ENST00000543140 A0A0B4J2C4 111 aa11.4□□□□□ -0.59
COL4A1-204ENST00000543140 SCGB1C2P0DMR2 95 aa11.4□□□□□ -0.59
COL4A1-204ENST00000543140 LYRM9A8MSI8 78 aa11.39□□□□□ -0.59
COL4A1-204ENST00000543140 ERG28Q9UKR5 140 aa11.39□□□□□ -0.59
COL4A1-204ENST00000543140 TMEM262E9PQX1 116 aa11.39□□□□□ -0.59
COL4A1-204ENST00000543140 PAX4O43316 350 aa11.39□□□□□ -0.59
COL4A1-204ENST00000543140 IGHV4-30-4P0DP06 118 aa11.39□□□□□ -0.59
COL4A1-204ENST00000543140 Q1RN00 199 aa11.39□□□□□ -0.59
COL4A1-204ENST00000543140 PRO0461Q9UI25 63 aa11.39□□□□□ -0.59
COL4A1-204ENST00000543140 TCL1BO95988 128 aa11.38□□□□□ -0.59
COL4A1-204ENST00000543140 ETDBQ3ZM63 59 aa11.38□□□□□ -0.59
COL4A1-204ENST00000543140 CELA1Q9UNI1 258 aa11.38□□□□□ -0.59
COL4A1-204ENST00000543140 STAB1Q9NY15 2570 aa11.38□□□□□ -0.59
COL4A1-204ENST00000543140 PRIMA1Q86XR5 153 aa11.38□□□□□ -0.59
COL4A1-204ENST00000543140 DAD1P61803 113 aa11.37□□□□□ -0.59
COL4A1-204ENST00000543140 OXLD1Q5BKU9 147 aa11.37□□□□□ -0.59
COL4A1-204ENST00000543140 CIRBPQ14011 172 aaKnown RBP11.37□□□□□ -0.59
COL4A1-204ENST00000543140 TIMM17BO60830 172 aa11.36□□□□□ -0.59
COL4A1-204ENST00000543140 Q8NAQ8 132 aa11.36□□□□□ -0.59
COL4A1-204ENST00000543140 LYRM7Q5U5X0 104 aa11.36□□□□□ -0.59
COL4A1-204ENST00000543140 TOMM7Q9P0U1 55 aa11.36□□□□□ -0.59
COL4A1-204ENST00000543140 MEIG1Q5JSS6 88 aa11.35□□□□□ -0.59
COL4A1-204ENST00000543140 CLPSL2Q6UWE3 100 aa11.35□□□□□ -0.59
COL4A1-204ENST00000543140 PKD1L1Q8TDX9 2849 aa11.34□□□□□ -0.59
COL4A1-204ENST00000543140 HTN3P15516 51 aa11.34□□□□□ -0.59
COL4A1-204ENST00000543140 FBN1P35555 2871 aaKnown RBP11.33□□□□□ -0.6
COL4A1-204ENST00000543140 TRAV26-1A0A087WT03 109 aa11.33□□□□□ -0.6
COL4A1-204ENST00000543140 MIFP14174 115 aa11.33□□□□□ -0.6
COL4A1-204ENST00000543140 SMCPP49901 116 aaPredicted RBP11.33□□□□□ -0.6
COL4A1-204ENST00000543140 KRTAP24-1Q3LI83 254 aa11.33□□□□□ -0.6
COL4A1-204ENST00000543140 C5orf38Q86SI9 138 aa11.33□□□□□ -0.6
COL4A1-204ENST00000543140 IGHV3OR16-9A0A0B4J2B5 98 aa11.33□□□□□ -0.6
COL4A1-204ENST00000543140 WIPF1O43516 503 aa11.33□□□□□ -0.6
COL4A1-204ENST00000543140 LINC00308Q8TCZ7 52 aa11.33□□□□□ -0.6
COL4A1-204ENST00000543140 RNF183Q96D59 192 aa11.33□□□□□ -0.6
COL4A1-204ENST00000543140 TRBV20-1A0A075B6N2 111 aa11.32□□□□□ -0.6
COL4A1-204ENST00000543140 LINC00959A0A1B0GUT2 108 aa11.32□□□□□ -0.6
COL4A1-204ENST00000543140 IFITM1P13164 125 aa11.32□□□□□ -0.6
COL4A1-204ENST00000543140 COX7B2Q8TF08 81 aa11.32□□□□□ -0.6
COL4A1-204ENST00000543140 ATP5G1P05496 136 aa11.31□□□□□ -0.6
COL4A1-204ENST00000543140 MAST4O15021 2626 aa11.31□□□□□ -0.6
COL4A1-204ENST00000543140 TRIAP1O43715 76 aa11.31□□□□□ -0.6
COL4A1-204ENST00000543140 XCL1P47992 114 aa11.31□□□□□ -0.6
COL4A1-204ENST00000543140 Q8N3U1 123 aa11.31□□□□□ -0.6
COL4A1-204ENST00000543140 SPART-AS1P0CW21 52 aa11.3□□□□□ -0.6
COL4A1-204ENST00000543140 KRTAP10-11P60412 298 aa11.3□□□□□ -0.6
COL4A1-204ENST00000543140 SOSTDC1Q6X4U4 206 aa11.3□□□□□ -0.6
COL4A1-204ENST00000543140 HERV-K104P63124 156 aa11.29□□□□□ -0.6
COL4A1-204ENST00000543140 A0A1B0GUV1 79 aa11.29□□□□□ -0.6
COL4A1-204ENST00000543140 RPL13AP40429 203 aaKnown RBP11.29□□□□□ -0.6
COL4A1-204ENST00000543140 A0A087WZ39 114 aa11.28□□□□□ -0.6
COL4A1-204ENST00000543140 ICOSQ9Y6W8 199 aa11.28□□□□□ -0.6
COL4A1-204ENST00000543140 C3orf56Q8N813 242 aa11.28□□□□□ -0.6
COL4A1-204ENST00000543140 RETNQ9HD89 108 aa11.28□□□□□ -0.6
COL4A1-204ENST00000543140 C11orf68Q9H3H3 251 aaKnown RBP11.27□□□□□ -0.61
COL4A1-204ENST00000543140 TRBV30A0A0K0K1B3 111 aa11.27□□□□□ -0.61
COL4A1-204ENST00000543140 SS18Q15532 418 aa11.27□□□□□ -0.61
COL4A1-204ENST00000543140 LINC00269Q8N2A0 174 aa11.27□□□□□ -0.61
COL4A1-204ENST00000543140 GAGE12HA6NDE8 117 aa11.26□□□□□ -0.61
COL4A1-204ENST00000543140 C9JAW5 83 aa11.26□□□□□ -0.61
COL4A1-204ENST00000543140 ANGP03950 147 aaKnown RBP11.24□□□□□ -0.61
COL4A1-204ENST00000543140 IGLV10-54A0A075B6I4 117 aa11.24□□□□□ -0.61
COL4A1-204ENST00000543140 MIR7-3HGQ8N6C7 128 aa11.24□□□□□ -0.61
COL4A1-204ENST00000543140 LINC00158P58513 81 aa11.23□□□□□ -0.61
COL4A1-204ENST00000543140 ATXN8Q156A1 80 aa11.23□□□□□ -0.61
COL4A1-204ENST00000543140 MRPL23Q16540 153 aaKnown RBP11.23□□□□□ -0.61
COL4A1-204ENST00000543140 CLEC2BQ92478 149 aa11.23□□□□□ -0.61
COL4A1-204ENST00000543140 SIGMAR1Q99720 223 aa11.23□□□□□ -0.61
COL4A1-204ENST00000543140 SLC25A20O43772 301 aa11.22□□□□□ -0.61
COL4A1-204ENST00000543140 PFN2P35080 140 aa11.22□□□□□ -0.61
COL4A1-204ENST00000543140 C6orf226Q5I0X4 101 aa11.22□□□□□ -0.61
COL4A1-204ENST00000543140 COPS9Q8WXC6 57 aa11.22□□□□□ -0.61
COL4A1-204ENST00000543140 COX6CP09669 75 aa11.22□□□□□ -0.61
COL4A1-204ENST00000543140 J3QR89 54 aa11.21□□□□□ -0.61
COL4A1-204ENST00000543140 FOXI1Q12951 378 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms