RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 AKAP6Q13023 2319 aa-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 ADGRL2O95490 1459 aa-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 HSPG2P98160 4391 aa-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 SPHKAPQ2M3C7 1700 aa-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 LPAP08519 4548 aa-0.19□□□□□ -2.44
VPS13A-213ENST00000539950 PI4KAP42356 2102 aa-0.19□□□□□ -2.44
VPS13A-213ENST00000539950 MYH9P35579 1960 aaKnown RBP-0.19□□□□□ -2.44
VPS13A-213ENST00000539950 SCAPERQ9BY12 1400 aa-0.19□□□□□ -2.44
VPS13A-213ENST00000539950 PIEZO2Q9H5I5 2752 aa-0.19□□□□□ -2.44
VPS13A-213ENST00000539950 IGLC1P0CG04 106 aa-0.19□□□□□ -2.44
VPS13A-213ENST00000539950 COX6B1P14854 86 aa-0.19□□□□□ -2.44
VPS13A-213ENST00000539950 SPRR2BP35325 72 aa-0.19□□□□□ -2.44
VPS13A-213ENST00000539950 LINC00846Q9NV44 126 aa-0.19□□□□□ -2.44
VPS13A-213ENST00000539950 PZPP20742 1482 aa-0.19□□□□□ -2.44
VPS13A-213ENST00000539950 MYH7P12883 1935 aa-0.19□□□□□ -2.44
VPS13A-213ENST00000539950 MYH8P13535 1937 aa-0.19□□□□□ -2.44
VPS13A-213ENST00000539950 ARHGAP5Q13017 1502 aa-0.19□□□□□ -2.44
VPS13A-213ENST00000539950 ARHGEF12Q9NZN5 1544 aa-0.19□□□□□ -2.44
VPS13A-213ENST00000539950 PTPRQQ9UMZ3 2332 aa-0.2□□□□□ -2.44
VPS13A-213ENST00000539950 COL4A6Q14031 1691 aa-0.2□□□□□ -2.44
VPS13A-213ENST00000539950 FAM24AA6NFZ4 105 aa-0.2□□□□□ -2.44
VPS13A-213ENST00000539950 CHKB-CPT1BH3BT56 60 aa-0.2□□□□□ -2.44
VPS13A-213ENST00000539950 C10orf113Q5VZT2 155 aa-0.2□□□□□ -2.44
VPS13A-213ENST00000539950 FAM223AQ8IWN6 122 aa-0.2□□□□□ -2.44
VPS13A-213ENST00000539950 TMEM203Q969S6 136 aa-0.2□□□□□ -2.44
VPS13A-213ENST00000539950 UQCR10Q9UDW1 63 aa-0.2□□□□□ -2.44
VPS13A-213ENST00000539950 STAB1Q9NY15 2570 aa-0.2□□□□□ -2.44
VPS13A-213ENST00000539950 KIAA0556O60303 1618 aa-0.2□□□□□ -2.44
VPS13A-213ENST00000539950 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.2□□□□□ -2.44
VPS13A-213ENST00000539950 PKDREJQ9NTG1 2253 aa-0.21□□□□□ -2.44
VPS13A-213ENST00000539950 C1orf167Q5SNV9 1468 aa-0.21□□□□□ -2.44
VPS13A-213ENST00000539950 ZFYVE16Q7Z3T8 1539 aa-0.21□□□□□ -2.44
VPS13A-213ENST00000539950 PSME4Q14997 1843 aa-0.21□□□□□ -2.44
VPS13A-213ENST00000539950 TRBV7-4A0A0J9YYF1 115 aa-0.21□□□□□ -2.44
VPS13A-213ENST00000539950 LINC00959A0A1B0GUT2 108 aa-0.21□□□□□ -2.44
VPS13A-213ENST00000539950 LINC00587B1AMM8 73 aa-0.21□□□□□ -2.44
VPS13A-213ENST00000539950 COX6CP09669 75 aa-0.21□□□□□ -2.44
VPS13A-213ENST00000539950 SPRR1BP22528 89 aa-0.21□□□□□ -2.44
VPS13A-213ENST00000539950 PPP3R1P63098 170 aa-0.21□□□□□ -2.44
VPS13A-213ENST00000539950 Q0VG73 95 aa-0.21□□□□□ -2.44
VPS13A-213ENST00000539950 MYO7BQ6PIF6 2116 aa-0.21□□□□□ -2.44
VPS13A-213ENST00000539950 COL6A3P12111 3177 aa-0.21□□□□□ -2.44
VPS13A-213ENST00000539950 DOPEY2Q9Y3R5 2298 aa-0.21□□□□□ -2.44
VPS13A-213ENST00000539950 A0A0G2JMZ2 1700 aa-0.21□□□□□ -2.44
VPS13A-213ENST00000539950 SETBP1Q9Y6X0 1596 aa-0.22□□□□□ -2.44
VPS13A-213ENST00000539950 FXYD6-FXYD2A0A087WZ82 144 aa-0.22□□□□□ -2.44
VPS13A-213ENST00000539950 NAP1L6A6NFF2 107 aa-0.22□□□□□ -2.44
VPS13A-213ENST00000539950 K7EQZ3 153 aa-0.22□□□□□ -2.44
VPS13A-213ENST00000539950 SAA2P0DJI9 122 aaPredicted RBP-0.22□□□□□ -2.44
VPS13A-213ENST00000539950 FAIMQ9NVQ4 179 aa-0.22□□□□□ -2.44
VPS13A-213ENST00000539950 PRO1854Q9UHT4 67 aa-0.22□□□□□ -2.44
VPS13A-213ENST00000539950 ARL2-SNX15V9GYD0 113 aa-0.22□□□□□ -2.44
VPS13A-213ENST00000539950 KDM5AP29375 1690 aaKnown RBP-0.22□□□□□ -2.44
VPS13A-213ENST00000539950 SCN7AQ01118 1682 aa-0.22□□□□□ -2.44
VPS13A-213ENST00000539950 TOPAZ1Q8N9V7 1692 aa-0.22□□□□□ -2.44
VPS13A-213ENST00000539950 XRN1Q8IZH2 1706 aaKnown RBP-0.22□□□□□ -2.44
VPS13A-213ENST00000539950 FLNAP21333 2647 aaKnown RBP-0.22□□□□□ -2.45
VPS13A-213ENST00000539950 USF3Q68DE3 2245 aa-0.22□□□□□ -2.45
VPS13A-213ENST00000539950 POLA1P09884 1462 aaPredicted RBP-0.22□□□□□ -2.45
VPS13A-213ENST00000539950 PRDM15P57071 1507 aaPredicted RBP-0.23□□□□□ -2.45
VPS13A-213ENST00000539950 CHD1O14646 1710 aa-0.23□□□□□ -2.45
VPS13A-213ENST00000539950 FAM223BA6NKX1 122 aa-0.23□□□□□ -2.45
VPS13A-213ENST00000539950 TMEM262E9PQX1 116 aa-0.23□□□□□ -2.45
VPS13A-213ENST00000539950 SNAPC5O75971 98 aa-0.23□□□□□ -2.45
VPS13A-213ENST00000539950 GNG11P61952 73 aa-0.23□□□□□ -2.45
VPS13A-213ENST00000539950 MRPS10P82664 201 aaKnown RBP-0.23□□□□□ -2.45
VPS13A-213ENST00000539950 SVBPQ8N300 66 aa-0.23□□□□□ -2.45
VPS13A-213ENST00000539950 LINC01600Q96MT4 127 aa-0.23□□□□□ -2.45
VPS13A-213ENST00000539950 PRO1933Q9H354 126 aa-0.23□□□□□ -2.45
VPS13A-213ENST00000539950 KMT2AQ03164 3969 aa-0.23□□□□□ -2.45
VPS13A-213ENST00000539950 EP300Q09472 2414 aaPredicted RBP-0.23□□□□□ -2.45
VPS13A-213ENST00000539950 GVINP1Q7Z2Y8 2422 aa-0.23□□□□□ -2.45
VPS13A-213ENST00000539950 ABCC5O15440 1437 aa-0.23□□□□□ -2.45
VPS13A-213ENST00000539950 EDC4Q6P2E9 1401 aaKnown RBP-0.23□□□□□ -2.45
VPS13A-213ENST00000539950 ZFHX3Q15911 3703 aa-0.23□□□□□ -2.45
VPS13A-213ENST00000539950 PLEKHH2Q8IVE3 1493 aa-0.23□□□□□ -2.45
VPS13A-213ENST00000539950 TOP2BQ02880 1626 aa-0.24□□□□□ -2.45
VPS13A-213ENST00000539950 NUP188Q5SRE5 1749 aa-0.24□□□□□ -2.45
VPS13A-213ENST00000539950 CGREF1Q99674 301 aa-0.24□□□□□ -2.45
VPS13A-213ENST00000539950 PLCE1Q9P212 2302 aa-0.24□□□□□ -2.45
VPS13A-213ENST00000539950 MUC2Q02817 5179 aa-0.24□□□□□ -2.45
VPS13A-213ENST00000539950 SPTBN1Q01082 2364 aaKnown RBP-0.24□□□□□ -2.45
VPS13A-213ENST00000539950 CC2D2AQ9P2K1 1620 aa-0.24□□□□□ -2.45
VPS13A-213ENST00000539950 TENM2Q9NT68 2774 aa-0.24□□□□□ -2.45
VPS13A-213ENST00000539950 ZANQ9Y493 2812 aa-0.24□□□□□ -2.45
VPS13A-213ENST00000539950 DCHS2Q6V1P9 2916 aa-0.24□□□□□ -2.45
VPS13A-213ENST00000539950 BTAF1O14981 1849 aa-0.24□□□□□ -2.45
VPS13A-213ENST00000539950 ANKRD17O75179 2603 aaKnown RBP-0.25□□□□□ -2.45
VPS13A-213ENST00000539950 A0A1B0GWA3 101 aa-0.25□□□□□ -2.45
VPS13A-213ENST00000539950 SPINK4O60575 86 aa-0.25□□□□□ -2.45
VPS13A-213ENST00000539950 KRTDAPP60985 99 aa-0.25□□□□□ -2.45
VPS13A-213ENST00000539950 HSD52Q0P140 79 aa-0.25□□□□□ -2.45
VPS13A-213ENST00000539950 MANBALQ9NQG1 85 aa-0.25□□□□□ -2.45
VPS13A-213ENST00000539950 GNG8Q9UK08 70 aa-0.25□□□□□ -2.45
VPS13A-213ENST00000539950 NKTRP30414 1462 aaKnown RBP-0.25□□□□□ -2.45
VPS13A-213ENST00000539950 PEG3Q9GZU2 1588 aa-0.25□□□□□ -2.45
VPS13A-213ENST00000539950 TSC2P49815 1807 aa-0.25□□□□□ -2.45
VPS13A-213ENST00000539950 ATRQ13535 2644 aa-0.25□□□□□ -2.45
VPS13A-213ENST00000539950 ALMS1Q8TCU4 4167 aa-0.26□□□□□ -2.45
VPS13A-213ENST00000539950 SLIT1O75093 1534 aa-0.26□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms