RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 TRAV22A0A0B4J277 110 aa-0.65□□□□□ -2.51
SMC4-227ENST00000497984 K7EP34 96 aa-0.65□□□□□ -2.51
SMC4-227ENST00000497984 SPRR1AP35321 89 aa-0.65□□□□□ -2.51
SMC4-227ENST00000497984 HIST1H1AQ02539 215 aaPredicted RBP-0.65□□□□□ -2.51
SMC4-227ENST00000497984 DEFB112Q30KQ8 113 aa-0.65□□□□□ -2.51
SMC4-227ENST00000497984 RPL7L1Q6DKI1 246 aaKnown RBP-0.65□□□□□ -2.51
SMC4-227ENST00000497984 NINQ8N4C6 2090 aa-0.66□□□□□ -2.51
SMC4-227ENST00000497984 NRXN2Q9P2S2 1712 aa-0.66□□□□□ -2.51
SMC4-227ENST00000497984 PAPPAQ13219 1627 aa-0.66□□□□□ -2.51
SMC4-227ENST00000497984 FAM92AA1XBS5 289 aa-0.66□□□□□ -2.52
SMC4-227ENST00000497984 APOC4-APOC2K7ER74 178 aa-0.66□□□□□ -2.52
SMC4-227ENST00000497984 LINC00694P0DN24 101 aa-0.66□□□□□ -2.52
SMC4-227ENST00000497984 COX6B2Q6YFQ2 88 aa-0.66□□□□□ -2.52
SMC4-227ENST00000497984 DEFB104AQ8WTQ1 72 aa-0.66□□□□□ -2.52
SMC4-227ENST00000497984 MAGI2Q86UL8 1455 aa-0.67□□□□□ -2.52
SMC4-227ENST00000497984 MBD5Q9P267 1494 aa-0.67□□□□□ -2.52
SMC4-227ENST00000497984 A6NIN4 97 aa-0.67□□□□□ -2.52
SMC4-227ENST00000497984 IFNA17P01571 189 aa-0.67□□□□□ -2.52
SMC4-227ENST00000497984 B2MP61769 119 aa-0.67□□□□□ -2.52
SMC4-227ENST00000497984 CFAP126Q5VTH2 177 aa-0.67□□□□□ -2.52
SMC4-227ENST00000497984 Q6ZUT4 128 aa-0.67□□□□□ -2.52
SMC4-227ENST00000497984 BAGE3Q86Y29 109 aa-0.67□□□□□ -2.52
SMC4-227ENST00000497984 SPTSSBQ8NFR3 76 aa-0.67□□□□□ -2.52
SMC4-227ENST00000497984 XIRP1Q702N8 1843 aaKnown RBP-0.67□□□□□ -2.52
SMC4-227ENST00000497984 KIF13AQ9H1H9 1805 aa-0.67□□□□□ -2.52
SMC4-227ENST00000497984 OVOS2A0A0J9YW53 1432 aa-0.67□□□□□ -2.52
SMC4-227ENST00000497984 OVOS2Q6IE36 1432 aa-0.67□□□□□ -2.52
SMC4-227ENST00000497984 MED14O60244 1454 aa-0.67□□□□□ -2.52
SMC4-227ENST00000497984 NKTRP30414 1462 aaKnown RBP-0.67□□□□□ -2.52
SMC4-227ENST00000497984 PTPN23Q9H3S7 1636 aa-0.67□□□□□ -2.52
SMC4-227ENST00000497984 GOLGA4Q13439 2230 aaKnown RBP-0.68□□□□□ -2.52
SMC4-227ENST00000497984 ADGRB1O14514 1584 aa-0.68□□□□□ -2.52
SMC4-227ENST00000497984 IL5P05113 134 aa-0.68□□□□□ -2.52
SMC4-227ENST00000497984 TSPAN19P0C672 248 aa-0.68□□□□□ -2.52
SMC4-227ENST00000497984 SCGB1A1P11684 91 aa-0.68□□□□□ -2.52
SMC4-227ENST00000497984 ZNF818PQ6ZRF7 136 aa-0.68□□□□□ -2.52
SMC4-227ENST00000497984 DPH3Q96FX2 82 aa-0.68□□□□□ -2.52
SMC4-227ENST00000497984 SMIM3Q9BZL3 60 aa-0.68□□□□□ -2.52
SMC4-227ENST00000497984 SCN3BQ9NY72 215 aa-0.68□□□□□ -2.52
SMC4-227ENST00000497984 PLXNA1Q9UIW2 1896 aa-0.68□□□□□ -2.52
SMC4-227ENST00000497984 LRP6O75581 1613 aa-0.68□□□□□ -2.52
SMC4-227ENST00000497984 PHIPQ8WWQ0 1821 aa-0.68□□□□□ -2.52
SMC4-227ENST00000497984 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.69□□□□□ -2.52
SMC4-227ENST00000497984 TMEM2Q9UHN6 1383 aa-0.69□□□□□ -2.52
SMC4-227ENST00000497984 BICRAQ9NZM4 1560 aa-0.69□□□□□ -2.52
SMC4-227ENST00000497984 DISP2A7MBM2 1401 aa-0.69□□□□□ -2.52
SMC4-227ENST00000497984 TROQ12816 1431 aaPredicted RBP-0.69□□□□□ -2.52
SMC4-227ENST00000497984 MUC22E2RYF6 1773 aaPredicted RBP-0.69□□□□□ -2.52
SMC4-227ENST00000497984 LOC730098B7Z3J9 87 aa-0.69□□□□□ -2.52
SMC4-227ENST00000497984 BCE1O60756 84 aa-0.69□□□□□ -2.52
SMC4-227ENST00000497984 S100A7L2Q5SY68 101 aa-0.69□□□□□ -2.52
SMC4-227ENST00000497984 CTAGE3PQ8IX95 158 aa-0.69□□□□□ -2.52
SMC4-227ENST00000497984 WFDC9Q8NEX5 89 aa-0.69□□□□□ -2.52
SMC4-227ENST00000497984 AGPAT4-IT1Q9H0P7 198 aa-0.69□□□□□ -2.52
SMC4-227ENST00000497984 NPVFQ9HCQ7 196 aa-0.69□□□□□ -2.52
SMC4-227ENST00000497984 LINC00312Q9Y6C7 94 aa-0.69□□□□□ -2.52
SMC4-227ENST00000497984 ADGRL2O95490 1459 aa-0.69□□□□□ -2.52
SMC4-227ENST00000497984 DOCK1Q14185 1865 aa-0.69□□□□□ -2.52
SMC4-227ENST00000497984 ADAMTS12P58397 1594 aa-0.7□□□□□ -2.52
SMC4-227ENST00000497984 DAPK1P53355 1430 aa-0.7□□□□□ -2.52
SMC4-227ENST00000497984 PRG4Q92954 1404 aaPredicted RBP-0.7□□□□□ -2.52
SMC4-227ENST00000497984 ALKQ9UM73 1620 aa-0.7□□□□□ -2.52
SMC4-227ENST00000497984 CBLN1P23435 193 aa-0.7□□□□□ -2.52
SMC4-227ENST00000497984 HAMPP81172 84 aa-0.7□□□□□ -2.52
SMC4-227ENST00000497984 PSMG3Q9BT73 122 aaPredicted RBP-0.7□□□□□ -2.52
SMC4-227ENST00000497984 SPCS1Q9Y6A9 102 aa-0.7□□□□□ -2.52
SMC4-227ENST00000497984 S4R3F8 94 aa-0.7□□□□□ -2.52
SMC4-227ENST00000497984 UBR3Q6ZT12 1888 aa-0.7□□□□□ -2.52
SMC4-227ENST00000497984 PAPPA2Q9BXP8 1791 aa-0.7□□□□□ -2.52
SMC4-227ENST00000497984 ZNF236Q9UL36 1845 aa-0.71□□□□□ -2.52
SMC4-227ENST00000497984 CASKIN1Q8WXD9 1431 aa-0.71□□□□□ -2.52
SMC4-227ENST00000497984 TJP1Q07157 1748 aa-0.71□□□□□ -2.52
SMC4-227ENST00000497984 PRDM2Q13029 1718 aa-0.71□□□□□ -2.52
SMC4-227ENST00000497984 NCR2O95944 276 aa-0.71□□□□□ -2.52
SMC4-227ENST00000497984 SMIM6P0DI80 62 aa-0.71□□□□□ -2.52
SMC4-227ENST00000497984 PIPP12273 146 aaPredicted RBP-0.71□□□□□ -2.52
SMC4-227ENST00000497984 CCL18P55774 89 aa-0.71□□□□□ -2.52
SMC4-227ENST00000497984 CKS1BP61024 79 aa-0.71□□□□□ -2.52
SMC4-227ENST00000497984 MARF1Q9Y4F3 1742 aaKnown RBP-0.72□□□□□ -2.52
SMC4-227ENST00000497984 C1orf167Q5SNV9 1468 aa-0.72□□□□□ -2.52
SMC4-227ENST00000497984 BCL9LQ86UU0 1499 aa-0.72□□□□□ -2.52
SMC4-227ENST00000497984 FYCO1Q9BQS8 1478 aa-0.72□□□□□ -2.52
SMC4-227ENST00000497984 LINC00959A0A1B0GUT2 108 aa-0.72□□□□□ -2.52
SMC4-227ENST00000497984 NPFFO15130 113 aa-0.72□□□□□ -2.52
SMC4-227ENST00000497984 RRAS2P62070 204 aaPredicted RBP-0.72□□□□□ -2.52
SMC4-227ENST00000497984 SPTSSAQ969W0 71 aa-0.72□□□□□ -2.52
SMC4-227ENST00000497984 LINC01600Q96MT4 127 aa-0.72□□□□□ -2.52
SMC4-227ENST00000497984 CICQ96RK0 1608 aaPredicted RBP-0.72□□□□□ -2.52
SMC4-227ENST00000497984 SIPA1L3O60292 1781 aaPredicted RBP-0.73□□□□□ -2.53
SMC4-227ENST00000497984 HMGXB3Q12766 1538 aa-0.73□□□□□ -2.53
SMC4-227ENST00000497984 TULP4Q9NRJ4 1543 aa-0.73□□□□□ -2.53
SMC4-227ENST00000497984 ARHGEF5Q12774 1597 aa-0.73□□□□□ -2.53
SMC4-227ENST00000497984 AKAP11Q9UKA4 1901 aa-0.73□□□□□ -2.53
SMC4-227ENST00000497984 J3QR89 54 aa-0.73□□□□□ -2.53
SMC4-227ENST00000497984 M0R2Z0 102 aa-0.73□□□□□ -2.53
SMC4-227ENST00000497984 ARPC5O15511 151 aa-0.73□□□□□ -2.53
SMC4-227ENST00000497984 SNCGO76070 127 aa-0.73□□□□□ -2.53
SMC4-227ENST00000497984 NDUFB6O95139 128 aa-0.73□□□□□ -2.53
SMC4-227ENST00000497984 CCL8P80075 99 aa-0.73□□□□□ -2.53
SMC4-227ENST00000497984 CDC42BPAQ5VT25 1732 aa-0.73□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms