RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 RPL11P62913 178 aaKnown RBP8.1□□□□□ -1.11
CUX1-204ENST00000393824 FAM104AQ969W3 186 aa8.1□□□□□ -1.11
CUX1-204ENST00000393824 VSIG2Q96IQ7 327 aa8.1□□□□□ -1.11
CUX1-204ENST00000393824 RHPN1-AS1Q9BWJ2 59 aa8.1□□□□□ -1.11
CUX1-204ENST00000393824 NOTCH3Q9UM47 2321 aa8.1□□□□□ -1.11
CUX1-204ENST00000393824 TRACP01848 142 aa8.09□□□□□ -1.11
CUX1-204ENST00000393824 CD28P10747 220 aa8.09□□□□□ -1.11
CUX1-204ENST00000393824 FAM74A4Q5TZK3 123 aa8.09□□□□□ -1.11
CUX1-204ENST00000393824 Q5XG85 94 aa8.09□□□□□ -1.11
CUX1-204ENST00000393824 RNF152Q8N8N0 203 aa8.09□□□□□ -1.11
CUX1-204ENST00000393824 C2orf48Q96LS8 159 aa8.09□□□□□ -1.11
CUX1-204ENST00000393824 PEMTQ9UBM1 199 aa8.09□□□□□ -1.11
CUX1-204ENST00000393824 TMEM258P61165 79 aa8.08□□□□□ -1.12
CUX1-204ENST00000393824 DAZ1Q9NQZ3 744 aaKnown RBP8.08□□□□□ -1.12
CUX1-204ENST00000393824 IGHV3-16A0A0C4DH30 117 aa8.08□□□□□ -1.12
CUX1-204ENST00000393824 COX7A2LO14548 114 aa8.08□□□□□ -1.12
CUX1-204ENST00000393824 PROK1P58294 105 aa8.08□□□□□ -1.12
CUX1-204ENST00000393824 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.08□□□□□ -1.12
CUX1-204ENST00000393824 C16orf95Q9H693 158 aa8.08□□□□□ -1.12
CUX1-204ENST00000393824 TINCRA0A1B0GVN0 87 aa8.07□□□□□ -1.12
CUX1-204ENST00000393824 A0A1W2PRX2 142 aa8.07□□□□□ -1.12
CUX1-204ENST00000393824 HIST1H4AP62805 103 aaKnown RBP8.07□□□□□ -1.12
CUX1-204ENST00000393824 KHDC1LQ5JSQ8 128 aa8.07□□□□□ -1.12
CUX1-204ENST00000393824 PRIMA1Q86XR5 153 aa8.07□□□□□ -1.12
CUX1-204ENST00000393824 PKD1L1Q8TDX9 2849 aa8.07□□□□□ -1.12
CUX1-204ENST00000393824 DAND5Q8N907 189 aa8.07□□□□□ -1.12
CUX1-204ENST00000393824 hADV29S1A0JD25 119 aa8.06□□□□□ -1.12
CUX1-204ENST00000393824 NPC2P61916 151 aa8.06□□□□□ -1.12
CUX1-204ENST00000393824 OXTP01178 125 aa8.06□□□□□ -1.12
CUX1-204ENST00000393824 DAZ2Q13117 558 aaKnown RBP8.06□□□□□ -1.12
CUX1-204ENST00000393824 BEAN1Q3B7T3 259 aa8.06□□□□□ -1.12
CUX1-204ENST00000393824 DAZ4Q86SG3 579 aaKnown RBP8.06□□□□□ -1.12
CUX1-204ENST00000393824 UBE2E2Q96LR5 201 aa8.06□□□□□ -1.12
CUX1-204ENST00000393824 DAZ3Q9NR90 486 aaKnown RBP8.06□□□□□ -1.12
CUX1-204ENST00000393824 TRAV12-3A0A0B4J271 114 aa8.05□□□□□ -1.12
CUX1-204ENST00000393824 MALP21145 153 aa8.05□□□□□ -1.12
CUX1-204ENST00000393824 PRO0628Q9UI54 55 aa8.05□□□□□ -1.12
CUX1-204ENST00000393824 TMEM89A2RUT3 159 aa8.04□□□□□ -1.12
CUX1-204ENST00000393824 ATOX1O00244 68 aa8.04□□□□□ -1.12
CUX1-204ENST00000393824 FAM222AQ5U5X8 452 aa8.04□□□□□ -1.12
CUX1-204ENST00000393824 A8MZ25 164 aa8.04□□□□□ -1.12
CUX1-204ENST00000393824 SLURP1P55000 103 aa8.04□□□□□ -1.12
CUX1-204ENST00000393824 SORL1Q92673 2214 aa8.04□□□□□ -1.12
CUX1-204ENST00000393824 IGHV1OR15-1A0A075B7D0 117 aa8.03□□□□□ -1.12
CUX1-204ENST00000393824 NDUFA1O15239 70 aa8.03□□□□□ -1.12
CUX1-204ENST00000393824 HOXD3P31249 432 aaPredicted RBP8.03□□□□□ -1.12
CUX1-204ENST00000393824 SYNJ2BPP57105 145 aa8.03□□□□□ -1.12
CUX1-204ENST00000393824 C22orf24Q9Y442 160 aa8.03□□□□□ -1.12
CUX1-204ENST00000393824 IGKV3-7A0A075B6H7 116 aa8.03□□□□□ -1.12
CUX1-204ENST00000393824 INAFM2P0DMQ5 153 aa8.03□□□□□ -1.12
CUX1-204ENST00000393824 CIRBPQ14011 172 aaKnown RBP8.03□□□□□ -1.12
CUX1-204ENST00000393824 KRTAP24-1Q3LI83 254 aa8.03□□□□□ -1.12
CUX1-204ENST00000393824 BAALC-AS2P0C853 105 aa8.02□□□□□ -1.13
CUX1-204ENST00000393824 TIRAPP58753 221 aa8.02□□□□□ -1.13
CUX1-204ENST00000393824 SPATA3Q8NHX4 192 aa8.02□□□□□ -1.13
CUX1-204ENST00000393824 LINC00308Q8TCZ7 52 aa8.02□□□□□ -1.13
CUX1-204ENST00000393824 C4orf3Q8WVX3 66 aa8.02□□□□□ -1.13
CUX1-204ENST00000393824 DSCR8Q96T75 97 aa8.02□□□□□ -1.13
CUX1-204ENST00000393824 CYSTM1Q9H1C7 97 aa8.02□□□□□ -1.13
CUX1-204ENST00000393824 SNRPD3P62318 126 aaKnown RBP8.01□□□□□ -1.13
CUX1-204ENST00000393824 TRAV13-1A0A0B4J241 112 aa8.01□□□□□ -1.13
CUX1-204ENST00000393824 COPS9Q8WXC6 57 aa8.01□□□□□ -1.13
CUX1-204ENST00000393824 IGLV5-45A0A087WSX0 123 aa8□□□□□ -1.13
CUX1-204ENST00000393824 SEC61GP60059 68 aa8□□□□□ -1.13
CUX1-204ENST00000393824 PIK3CD-AS1Q5SR53 167 aa8□□□□□ -1.13
CUX1-204ENST00000393824 UBE2D4Q9Y2X8 147 aa8□□□□□ -1.13
CUX1-204ENST00000393824 RNASE13Q5GAN3 156 aaKnown RBP8□□□□□ -1.13
CUX1-204ENST00000393824 C1orf43Q9BWL3 253 aa8□□□□□ -1.13
CUX1-204ENST00000393824 K7EQG2 157 aa7.99□□□□□ -1.13
CUX1-204ENST00000393824 RPL18AQ02543 176 aaKnown RBP7.99□□□□□ -1.13
CUX1-204ENST00000393824 ANK2Q01484 3957 aa7.99□□□□□ -1.13
CUX1-204ENST00000393824 CHCHD7Q9BUK0 85 aa7.98□□□□□ -1.13
CUX1-204ENST00000393824 CDKN2A-AS1Q9UH64 79 aa7.98□□□□□ -1.13
CUX1-204ENST00000393824 ZNF415Q09FC8 603 aa7.98□□□□□ -1.13
CUX1-204ENST00000393824 CCL24O00175 119 aa7.97□□□□□ -1.13
CUX1-204ENST00000393824 UPK3BQ9BT76 320 aa7.97□□□□□ -1.13
CUX1-204ENST00000393824 CMYA5Q8N3K9 4069 aa7.97□□□□□ -1.13
CUX1-204ENST00000393824 TRAV12-2A0A075B6T6 113 aa7.97□□□□□ -1.13
CUX1-204ENST00000393824 IGLV5-39A0A0G2JS06 123 aa7.97□□□□□ -1.13
CUX1-204ENST00000393824 SOSTDC1Q6X4U4 206 aa7.97□□□□□ -1.13
CUX1-204ENST00000393824 SERP2Q8N6R1 65 aa7.97□□□□□ -1.13
CUX1-204ENST00000393824 FAM218AQ96MZ4 157 aa7.97□□□□□ -1.13
CUX1-204ENST00000393824 RS1O15537 224 aa7.96□□□□□ -1.13
CUX1-204ENST00000393824 RPL35AP18077 110 aaKnown RBP7.96□□□□□ -1.13
CUX1-204ENST00000393824 PFN2P35080 140 aa7.96□□□□□ -1.14
CUX1-204ENST00000393824 LINC00336Q6ZUF6 198 aa7.96□□□□□ -1.14
CUX1-204ENST00000393824 Q9H8V8 135 aa7.96□□□□□ -1.14
CUX1-204ENST00000393824 Q6JHZ5 121 aa7.95□□□□□ -1.14
CUX1-204ENST00000393824 SPINK13Q1W4C9 94 aa7.95□□□□□ -1.14
CUX1-204ENST00000393824 PF4P02776 101 aa7.94□□□□□ -1.14
CUX1-204ENST00000393824 RPL28P46779 137 aaKnown RBP7.94□□□□□ -1.14
CUX1-204ENST00000393824 PKIGQ9Y2B9 76 aa7.94□□□□□ -1.14
CUX1-204ENST00000393824 NOTCH1P46531 2555 aa7.93□□□□□ -1.14
CUX1-204ENST00000393824 DNHD1Q96M86 4753 aa7.93□□□□□ -1.14
CUX1-204ENST00000393824 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.93□□□□□ -1.14
CUX1-204ENST00000393824 IGKV2-29A2NJV5 120 aaPredicted RBP7.93□□□□□ -1.14
CUX1-204ENST00000393824 A8MTW9 85 aa7.93□□□□□ -1.14
CUX1-204ENST00000393824 OBSCN-AS1Q96MR7 158 aa7.93□□□□□ -1.14
CUX1-204ENST00000393824 LINC00467Q9BRT7 94 aa7.93□□□□□ -1.14
CUX1-204ENST00000393824 V9GYY9 64 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms