RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 NTM-AS1Q6ZSK4 140 aa10.97□□□□□ -0.65
CCDC40-202ENST00000374876 COL7A1Q02388 2944 aa10.97□□□□□ -0.65
CCDC40-202ENST00000374876 IGLV5-45A0A087WSX0 123 aa10.97□□□□□ -0.65
CCDC40-202ENST00000374876 HERVK_113P63121 156 aa10.97□□□□□ -0.65
CCDC40-202ENST00000374876 LITAFQ99732 161 aa10.97□□□□□ -0.65
CCDC40-202ENST00000374876 OVOL2Q9BRP0 275 aa10.97□□□□□ -0.65
CCDC40-202ENST00000374876 CSDC2Q9Y534 153 aaKnown RBP10.97□□□□□ -0.65
CCDC40-202ENST00000374876 NBEAL2Q6ZNJ1 2754 aa10.96□□□□□ -0.65
CCDC40-202ENST00000374876 A0A0B4J2C4 111 aa10.96□□□□□ -0.65
CCDC40-202ENST00000374876 CIDEAO60543 219 aa10.96□□□□□ -0.65
CCDC40-202ENST00000374876 PRSS2P07478 247 aa10.96□□□□□ -0.65
CCDC40-202ENST00000374876 ETDBQ3ZM63 59 aa10.96□□□□□ -0.65
CCDC40-202ENST00000374876 ZFAND6Q6FIF0 208 aa10.96□□□□□ -0.65
CCDC40-202ENST00000374876 SCGB1C2P0DMR2 95 aa10.96□□□□□ -0.66
CCDC40-202ENST00000374876 SH2D6Q7Z4S9 175 aa10.96□□□□□ -0.66
CCDC40-202ENST00000374876 RETNQ9HD89 108 aa10.96□□□□□ -0.66
CCDC40-202ENST00000374876 DNAH9Q9NYC9 4486 aa10.95□□□□□ -0.66
CCDC40-202ENST00000374876 TRBV20-1A0A075B6N2 111 aa10.95□□□□□ -0.66
CCDC40-202ENST00000374876 TRGV4A0A0C4DH28 118 aa10.95□□□□□ -0.66
CCDC40-202ENST00000374876 TRBV6-4A0A1B0GX49 114 aa10.95□□□□□ -0.66
CCDC40-202ENST00000374876 UBE2L6O14933 153 aa10.95□□□□□ -0.66
CCDC40-202ENST00000374876 COX6A2Q02221 97 aa10.95□□□□□ -0.66
CCDC40-202ENST00000374876 ERG28Q9UKR5 140 aa10.95□□□□□ -0.66
CCDC40-202ENST00000374876 LINC00242Q5T6M2 205 aa10.94□□□□□ -0.66
CCDC40-202ENST00000374876 TMEM101Q96IK0 257 aa10.94□□□□□ -0.66
CCDC40-202ENST00000374876 TM2D3Q9BRN9 247 aa10.94□□□□□ -0.66
CCDC40-202ENST00000374876 SPANXDQ9BXN6 97 aa10.94□□□□□ -0.66
CCDC40-202ENST00000374876 GTSF1LQ9H1H1 148 aa10.94□□□□□ -0.66
CCDC40-202ENST00000374876 SPANXCQ9NY87 97 aa10.94□□□□□ -0.66
CCDC40-202ENST00000374876 TRAV13-1A0A0B4J241 112 aa10.94□□□□□ -0.66
CCDC40-202ENST00000374876 J3QR89 54 aa10.94□□□□□ -0.66
CCDC40-202ENST00000374876 EIF4EBP3O60516 100 aaPredicted RBP10.94□□□□□ -0.66
CCDC40-202ENST00000374876 IGHV3-33P01772 117 aa10.94□□□□□ -0.66
CCDC40-202ENST00000374876 NHLRC4P0CG21 123 aaPredicted RBP10.94□□□□□ -0.66
CCDC40-202ENST00000374876 APOC4P55056 127 aa10.94□□□□□ -0.66
CCDC40-202ENST00000374876 ADAMTSL4-AS1Q5T5F5 129 aa10.94□□□□□ -0.66
CCDC40-202ENST00000374876 TMEM243Q9BU79 118 aa10.94□□□□□ -0.66
CCDC40-202ENST00000374876 H7C2G1 150 aa10.93□□□□□ -0.66
CCDC40-202ENST00000374876 TCL1BO95988 128 aa10.93□□□□□ -0.66
CCDC40-202ENST00000374876 MIAQ16674 131 aa10.93□□□□□ -0.66
CCDC40-202ENST00000374876 CDC42SE2Q9NRR3 84 aa10.93□□□□□ -0.66
CCDC40-202ENST00000374876 LOC100131303A0A0U1RQF7 123 aa10.92□□□□□ -0.66
CCDC40-202ENST00000374876 C21orf62-AS1Q17RA5 79 aa10.92□□□□□ -0.66
CCDC40-202ENST00000374876 FAM19A3Q7Z5A8 133 aa10.92□□□□□ -0.66
CCDC40-202ENST00000374876 NDUFA1O15239 70 aa10.92□□□□□ -0.66
CCDC40-202ENST00000374876 Q1RN00 199 aa10.92□□□□□ -0.66
CCDC40-202ENST00000374876 DEFB135Q30KP9 77 aa10.92□□□□□ -0.66
CCDC40-202ENST00000374876 KIR2DL5BQ8NHK3 375 aa10.92□□□□□ -0.66
CCDC40-202ENST00000374876 TENM3Q9P273 2699 aa10.91□□□□□ -0.66
CCDC40-202ENST00000374876 TIMM17BO60830 172 aa10.91□□□□□ -0.66
CCDC40-202ENST00000374876 SPATA25Q9BR10 227 aa10.91□□□□□ -0.66
CCDC40-202ENST00000374876 IGLV5-39A0A0G2JS06 123 aa10.91□□□□□ -0.66
CCDC40-202ENST00000374876 NPC2P61916 151 aa10.9□□□□□ -0.66
CCDC40-202ENST00000374876 FHL2Q14192 279 aa10.9□□□□□ -0.66
CCDC40-202ENST00000374876 HUWE1Q7Z6Z7 4374 aaKnown RBP10.89□□□□□ -0.67
CCDC40-202ENST00000374876 H7C423 109 aa10.89□□□□□ -0.67
CCDC40-202ENST00000374876 SMCPP49901 116 aaPredicted RBP10.89□□□□□ -0.67
CCDC40-202ENST00000374876 CIRBPQ14011 172 aaKnown RBP10.89□□□□□ -0.67
CCDC40-202ENST00000374876 SMIM1B2RUZ4 78 aa10.89□□□□□ -0.67
CCDC40-202ENST00000374876 Q9H8V8 135 aa10.88□□□□□ -0.67
CCDC40-202ENST00000374876 DEFB130BP0DP73 79 aa10.87□□□□□ -0.67
CCDC40-202ENST00000374876 DEFB130AP0DP74 79 aa10.87□□□□□ -0.67
CCDC40-202ENST00000374876 IFITM1P13164 125 aa10.87□□□□□ -0.67
CCDC40-202ENST00000374876 ATP6V0E2Q8NHE4 81 aa10.87□□□□□ -0.67
CCDC40-202ENST00000374876 RNF183Q96D59 192 aa10.87□□□□□ -0.67
CCDC40-202ENST00000374876 DAND5Q8N907 189 aa10.86□□□□□ -0.67
CCDC40-202ENST00000374876 TRBV6-8A0A0A6YYG3 113 aa10.85□□□□□ -0.67
CCDC40-202ENST00000374876 GAGE6Q13070 117 aa10.85□□□□□ -0.67
CCDC40-202ENST00000374876 F5H768 121 aa10.85□□□□□ -0.67
CCDC40-202ENST00000374876 ZNF625Q96I27 306 aaPredicted RBP10.85□□□□□ -0.67
CCDC40-202ENST00000374876 TRBV30A0A0K0K1B3 111 aa10.84□□□□□ -0.67
CCDC40-202ENST00000374876 FOXI1Q12951 378 aa10.84□□□□□ -0.67
CCDC40-202ENST00000374876 CHCHD5Q9BSY4 110 aa10.84□□□□□ -0.67
CCDC40-202ENST00000374876 TRIAP1O43715 76 aa10.83□□□□□ -0.68
CCDC40-202ENST00000374876 ATXN8Q156A1 80 aa10.83□□□□□ -0.68
CCDC40-202ENST00000374876 STAB2Q8WWQ8 2551 aa10.82□□□□□ -0.68
CCDC40-202ENST00000374876 SMIM9A6NGZ8 99 aa10.82□□□□□ -0.68
CCDC40-202ENST00000374876 TEN1Q86WV5 123 aa10.82□□□□□ -0.68
CCDC40-202ENST00000374876 LINC00612Q8N6U2 182 aa10.82□□□□□ -0.68
CCDC40-202ENST00000374876 ICOSQ9Y6W8 199 aa10.82□□□□□ -0.68
CCDC40-202ENST00000374876 IGKV3OR2-268A0A0C4DH90 116 aa10.82□□□□□ -0.68
CCDC40-202ENST00000374876 A0A0U1RRA0 63 aa10.82□□□□□ -0.68
CCDC40-202ENST00000374876 GAGE12HA6NDE8 117 aa10.82□□□□□ -0.68
CCDC40-202ENST00000374876 C9JAW5 83 aa10.82□□□□□ -0.68
CCDC40-202ENST00000374876 MEIG1Q5JSS6 88 aa10.82□□□□□ -0.68
CCDC40-202ENST00000374876 LINC00308Q8TCZ7 52 aa10.82□□□□□ -0.68
CCDC40-202ENST00000374876 COPS9Q8WXC6 57 aa10.82□□□□□ -0.68
CCDC40-202ENST00000374876 X6R8D5 127 aa10.82□□□□□ -0.68
CCDC40-202ENST00000374876 SLC25A20O43772 301 aa10.81□□□□□ -0.68
CCDC40-202ENST00000374876 HERV-K104P63124 156 aa10.81□□□□□ -0.68
CCDC40-202ENST00000374876 IGLV4-60A0A075B6I1 120 aa10.8□□□□□ -0.68
CCDC40-202ENST00000374876 DEFB4AO15263 64 aa10.8□□□□□ -0.68
CCDC40-202ENST00000374876 COX6CP09669 75 aa10.8□□□□□ -0.68
CCDC40-202ENST00000374876 PPDPFLQ8WWR9 84 aa10.8□□□□□ -0.68
CCDC40-202ENST00000374876 GYPEP15421 78 aa10.8□□□□□ -0.68
CCDC40-202ENST00000374876 RPL13AP40429 203 aaKnown RBP10.8□□□□□ -0.68
CCDC40-202ENST00000374876 A0A0J9YWU9 116 aa10.79□□□□□ -0.68
CCDC40-202ENST00000374876 ANKRD29Q8N6D5 301 aa10.79□□□□□ -0.68
CCDC40-202ENST00000374876 LINC01620Q4KN68 170 aa10.78□□□□□ -0.68
CCDC40-202ENST00000374876 SIGMAR1Q99720 223 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms