RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ORAOV1Q8WV07 137 aa9.46□□□□□ -0.9
PTPRF-202ENST00000372405 DEFB131BA0A096LNP1 70 aa9.45□□□□□ -0.9
PTPRF-202ENST00000372405 K7EP13 123 aa9.45□□□□□ -0.9
PTPRF-202ENST00000372405 IGLV5-39A0A0G2JS06 123 aa9.44□□□□□ -0.9
PTPRF-202ENST00000372405 SMIM1B2RUZ4 78 aa9.44□□□□□ -0.9
PTPRF-202ENST00000372405 H3BRM9 83 aa9.44□□□□□ -0.9
PTPRF-202ENST00000372405 SCGB1D4Q6XE38 83 aa9.44□□□□□ -0.9
PTPRF-202ENST00000372405 C10orf126Q8N4M7 172 aa9.44□□□□□ -0.9
PTPRF-202ENST00000372405 LINC00959A0A1B0GUT2 108 aa9.44□□□□□ -0.9
PTPRF-202ENST00000372405 FXYD2P54710 66 aa9.44□□□□□ -0.9
PTPRF-202ENST00000372405 Q6ZVH6 145 aa9.44□□□□□ -0.9
PTPRF-202ENST00000372405 GCSHP23434 173 aa9.43□□□□□ -0.9
PTPRF-202ENST00000372405 CLPSL2Q6UWE3 100 aa9.43□□□□□ -0.9
PTPRF-202ENST00000372405 COX11Q9Y6N1 276 aa9.43□□□□□ -0.9
PTPRF-202ENST00000372405 STAB2Q8WWQ8 2551 aa9.43□□□□□ -0.9
PTPRF-202ENST00000372405 IGHV3OR16-9A0A0B4J2B5 98 aa9.43□□□□□ -0.9
PTPRF-202ENST00000372405 CEND1Q8N111 149 aa9.43□□□□□ -0.9
PTPRF-202ENST00000372405 TM2D2Q9BX73 214 aa9.43□□□□□ -0.9
PTPRF-202ENST00000372405 TAL2Q16559 108 aa9.42□□□□□ -0.9
PTPRF-202ENST00000372405 ZFAND6Q6FIF0 208 aa9.42□□□□□ -0.9
PTPRF-202ENST00000372405 LINC00269Q8N2A0 174 aa9.42□□□□□ -0.9
PTPRF-202ENST00000372405 HIST1H4GQ99525 98 aa9.42□□□□□ -0.9
PTPRF-202ENST00000372405 NDUFA12Q9UI09 145 aa9.41□□□□□ -0.9
PTPRF-202ENST00000372405 A0A0J9YXY3 114 aa9.41□□□□□ -0.9
PTPRF-202ENST00000372405 TAX1BP3O14907 124 aa9.41□□□□□ -0.9
PTPRF-202ENST00000372405 ANGP03950 147 aaKnown RBP9.4□□□□□ -0.9
PTPRF-202ENST00000372405 ESRGQ1W209 222 aa9.4□□□□□ -0.9
PTPRF-202ENST00000372405 SPANXB1Q9NS25 103 aaPredicted RBP9.39□□□□□ -0.91
PTPRF-202ENST00000372405 TRAV10A0A0B4J240 114 aa9.39□□□□□ -0.91
PTPRF-202ENST00000372405 CCL25O15444 150 aa9.39□□□□□ -0.91
PTPRF-202ENST00000372405 XCL1P47992 114 aa9.39□□□□□ -0.91
PTPRF-202ENST00000372405 REG3AQ06141 175 aa9.39□□□□□ -0.91
PTPRF-202ENST00000372405 WFDC10BQ8IUB3 73 aa9.39□□□□□ -0.91
PTPRF-202ENST00000372405 LITAFQ99732 161 aa9.39□□□□□ -0.91
PTPRF-202ENST00000372405 B9D2Q9BPU9 175 aa9.39□□□□□ -0.91
PTPRF-202ENST00000372405 PRKDCP78527 4128 aaKnown RBP9.38□□□□□ -0.91
PTPRF-202ENST00000372405 A0A087WZ39 114 aa9.38□□□□□ -0.91
PTPRF-202ENST00000372405 C5orf38Q86SI9 138 aa9.38□□□□□ -0.91
PTPRF-202ENST00000372405 NDUFA1O15239 70 aa9.37□□□□□ -0.91
PTPRF-202ENST00000372405 IGHV3-30P01768 117 aa9.37□□□□□ -0.91
PTPRF-202ENST00000372405 IGHV3-30-5P0DP03 117 aa9.37□□□□□ -0.91
PTPRF-202ENST00000372405 SS18Q15532 418 aa9.37□□□□□ -0.91
PTPRF-202ENST00000372405 A6NDN8 102 aa9.37□□□□□ -0.91
PTPRF-202ENST00000372405 SRSF9Q13242 221 aaKnown RBP eCLIP9.37□□□□□ -0.91
PTPRF-202ENST00000372405 UBE2V1Q13404 147 aa9.37□□□□□ -0.91
PTPRF-202ENST00000372405 IGLV10-54A0A075B6I4 117 aa9.36□□□□□ -0.91
PTPRF-202ENST00000372405 K7ERJ3 54 aa9.36□□□□□ -0.91
PTPRF-202ENST00000372405 PTTG1IPP53801 180 aa9.36□□□□□ -0.91
PTPRF-202ENST00000372405 ZNF625Q96I27 306 aaPredicted RBP9.36□□□□□ -0.91
PTPRF-202ENST00000372405 Q9H8V8 135 aa9.36□□□□□ -0.91
PTPRF-202ENST00000372405 PRR34Q9NV39 138 aa9.36□□□□□ -0.91
PTPRF-202ENST00000372405 IGHV3-33P01772 117 aa9.35□□□□□ -0.91
PTPRF-202ENST00000372405 ADAMTSL4-AS1Q5T5F5 129 aa9.35□□□□□ -0.91
PTPRF-202ENST00000372405 CHCHD10Q8WYQ3 142 aaPredicted RBP9.35□□□□□ -0.91
PTPRF-202ENST00000372405 NHP2Q9NX24 153 aaKnown RBP9.35□□□□□ -0.91
PTPRF-202ENST00000372405 KLK12Q9UKR0 248 aa9.35□□□□□ -0.91
PTPRF-202ENST00000372405 MEGF8Q7Z7M0 2845 aa9.35□□□□□ -0.91
PTPRF-202ENST00000372405 ENHOQ6UWT2 76 aa9.35□□□□□ -0.91
PTPRF-202ENST00000372405 CD164L2Q6UWJ8 174 aa9.33□□□□□ -0.92
PTPRF-202ENST00000372405 COX7B2Q8TF08 81 aa9.33□□□□□ -0.92
PTPRF-202ENST00000372405 TMEM238C9JI98 176 aa9.33□□□□□ -0.92
PTPRF-202ENST00000372405 RAB37Q96AX2 223 aa9.33□□□□□ -0.92
PTPRF-202ENST00000372405 A0A1B0GWB2 263 aa9.32□□□□□ -0.92
PTPRF-202ENST00000372405 SMIM13P0DJ93 91 aa9.32□□□□□ -0.92
PTPRF-202ENST00000372405 C15orf53Q8NAA6 179 aa9.32□□□□□ -0.92
PTPRF-202ENST00000372405 FOXI1Q12951 378 aa9.32□□□□□ -0.92
PTPRF-202ENST00000372405 MUSTN1Q8IVN3 82 aa9.32□□□□□ -0.92
PTPRF-202ENST00000372405 TOMM7Q9P0U1 55 aa9.32□□□□□ -0.92
PTPRF-202ENST00000372405 DYNC2H1Q8NCM8 4307 aaKnown RBP9.31□□□□□ -0.92
PTPRF-202ENST00000372405 CSMD3Q7Z407 3707 aa9.31□□□□□ -0.92
PTPRF-202ENST00000372405 NAA38Q9BRA0 125 aaKnown RBP9.31□□□□□ -0.92
PTPRF-202ENST00000372405 SPANXDQ9BXN6 97 aa9.31□□□□□ -0.92
PTPRF-202ENST00000372405 SPANXCQ9NY87 97 aa9.31□□□□□ -0.92
PTPRF-202ENST00000372405 EIF4EBP3O60516 100 aaPredicted RBP9.3□□□□□ -0.92
PTPRF-202ENST00000372405 TIMM17BO60830 172 aa9.3□□□□□ -0.92
PTPRF-202ENST00000372405 LINC01561Q8N1V8 128 aa9.3□□□□□ -0.92
PTPRF-202ENST00000372405 DAND5Q8N907 189 aa9.3□□□□□ -0.92
PTPRF-202ENST00000372405 C9orf118A6NHY6 69 aa9.3□□□□□ -0.92
PTPRF-202ENST00000372405 IGLL5B9A064 214 aa9.3□□□□□ -0.92
PTPRF-202ENST00000372405 VAMP3Q15836 100 aa9.3□□□□□ -0.92
PTPRF-202ENST00000372405 MIAQ16674 131 aa9.3□□□□□ -0.92
PTPRF-202ENST00000372405 LINC00588Q9Y4M8 146 aa9.3□□□□□ -0.92
PTPRF-202ENST00000372405 COX7A2LO14548 114 aa9.29□□□□□ -0.92
PTPRF-202ENST00000372405 KRTAP21-3Q3LHN1 58 aa9.29□□□□□ -0.92
PTPRF-202ENST00000372405 LINC01556Q5JQF7 62 aa9.29□□□□□ -0.92
PTPRF-202ENST00000372405 UBE2WQ96B02 151 aa9.29□□□□□ -0.92
PTPRF-202ENST00000372405 LYSTQ99698 3801 aa9.29□□□□□ -0.92
PTPRF-202ENST00000372405 A4D1N5 150 aa9.28□□□□□ -0.92
PTPRF-202ENST00000372405 GAGE12HA6NDE8 117 aa9.28□□□□□ -0.92
PTPRF-202ENST00000372405 A0A0U1RRA0 63 aa9.28□□□□□ -0.92
PTPRF-202ENST00000372405 TMEM238LA0A1B0GVL6 79 aa9.28□□□□□ -0.92
PTPRF-202ENST00000372405 A6NJY4 79 aa9.28□□□□□ -0.92
PTPRF-202ENST00000372405 H3BUT2 72 aa9.28□□□□□ -0.92
PTPRF-202ENST00000372405 CFC1BP0CG36 223 aa9.28□□□□□ -0.92
PTPRF-202ENST00000372405 CFC1P0CG37 223 aa9.28□□□□□ -0.92
PTPRF-202ENST00000372405 NPC2P61916 151 aa9.28□□□□□ -0.92
PTPRF-202ENST00000372405 HERV-K104P63124 156 aa9.28□□□□□ -0.92
PTPRF-202ENST00000372405 KIAA0087Q14695 138 aa9.28□□□□□ -0.92
PTPRF-202ENST00000372405 PRSS2P07478 247 aa9.27□□□□□ -0.93
PTPRF-202ENST00000372405 KRTAP26-1Q6PEX3 210 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms