RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 POM121L12Q8N7R1 296 aa4.68□□□□□ -1.66
UPF2-201ENST00000356352 NUP210LQ5VU65 1888 aa4.68□□□□□ -1.66
UPF2-201ENST00000356352 KIAA1549LQ6ZVL6 1849 aa4.68□□□□□ -1.66
UPF2-201ENST00000356352 IGLV1-51P01701 117 aa4.67□□□□□ -1.66
UPF2-201ENST00000356352 CIRBP-AS1Q8TBR5 109 aa4.67□□□□□ -1.66
UPF2-201ENST00000356352 WNK2Q9Y3S1 2297 aa4.67□□□□□ -1.66
UPF2-201ENST00000356352 SMIM1B2RUZ4 78 aa4.67□□□□□ -1.66
UPF2-201ENST00000356352 SPTBN2O15020 2390 aa4.67□□□□□ -1.66
UPF2-201ENST00000356352 C2orf16Q68DN1 1984 aa4.67□□□□□ -1.66
UPF2-201ENST00000356352 TRBV10-3A0A0K0K1G6 114 aa4.67□□□□□ -1.66
UPF2-201ENST00000356352 Q6ZS46 218 aa4.67□□□□□ -1.66
UPF2-201ENST00000356352 COL4A4P53420 1690 aaPredicted RBP4.66□□□□□ -1.66
UPF2-201ENST00000356352 TRBV7-6A0A0J9YX20 115 aa4.66□□□□□ -1.66
UPF2-201ENST00000356352 ODF3L2Q3SX64 289 aa4.66□□□□□ -1.66
UPF2-201ENST00000356352 C1orf195Q5TG92 126 aa4.66□□□□□ -1.66
UPF2-201ENST00000356352 C6orf223Q8N319 242 aa4.66□□□□□ -1.66
UPF2-201ENST00000356352 IGHV6-1A0A0B4J1U7 121 aa4.66□□□□□ -1.66
UPF2-201ENST00000356352 UNQ6190/PRO20217Q6UXQ8 127 aa4.66□□□□□ -1.66
UPF2-201ENST00000356352 Q9BRP9 147 aa4.66□□□□□ -1.66
UPF2-201ENST00000356352 ALPK3Q96L96 1907 aa4.66□□□□□ -1.66
UPF2-201ENST00000356352 PRR4Q16378 134 aa4.66□□□□□ -1.66
UPF2-201ENST00000356352 LINC00208Q96KT6 92 aa4.66□□□□□ -1.66
UPF2-201ENST00000356352 DOPEY2Q9Y3R5 2298 aa4.66□□□□□ -1.66
UPF2-201ENST00000356352 PRO3102Q9H379 93 aa4.65□□□□□ -1.66
UPF2-201ENST00000356352 GVINP1Q7Z2Y8 2422 aa4.65□□□□□ -1.66
UPF2-201ENST00000356352 OXLD1Q5BKU9 147 aa4.65□□□□□ -1.66
UPF2-201ENST00000356352 C1orf134Q5TEV5 83 aa4.65□□□□□ -1.66
UPF2-201ENST00000356352 FHL2Q14192 279 aa4.65□□□□□ -1.67
UPF2-201ENST00000356352 ROS1P08922 2347 aa4.65□□□□□ -1.67
UPF2-201ENST00000356352 ABCA1O95477 2261 aa4.65□□□□□ -1.67
UPF2-201ENST00000356352 A0A1B0GUV1 79 aa4.65□□□□□ -1.67
UPF2-201ENST00000356352 NHLRC4P0CG21 123 aaPredicted RBP4.65□□□□□ -1.67
UPF2-201ENST00000356352 ZGRF1Q86YA3 2104 aa4.65□□□□□ -1.67
UPF2-201ENST00000356352 NCOR1O75376 2440 aa4.65□□□□□ -1.67
UPF2-201ENST00000356352 CCDC179H3BU77 68 aa4.64□□□□□ -1.67
UPF2-201ENST00000356352 CELA1Q9UNI1 258 aa4.64□□□□□ -1.67
UPF2-201ENST00000356352 XGP55808 180 aa4.64□□□□□ -1.67
UPF2-201ENST00000356352 AMELXQ99217 191 aa4.64□□□□□ -1.67
UPF2-201ENST00000356352 LINC01556Q5JQF7 62 aa4.64□□□□□ -1.67
UPF2-201ENST00000356352 BEAN1Q3B7T3 259 aa4.64□□□□□ -1.67
UPF2-201ENST00000356352 COX8CQ7Z4L0 72 aa4.64□□□□□ -1.67
UPF2-201ENST00000356352 Q8N2B8 174 aa4.64□□□□□ -1.67
UPF2-201ENST00000356352 A0A087WYN8 130 aa4.63□□□□□ -1.67
UPF2-201ENST00000356352 TRBV7-7A0A0K0K1E9 115 aa4.63□□□□□ -1.67
UPF2-201ENST00000356352 hDV103S1A0JD37 113 aa4.63□□□□□ -1.67
UPF2-201ENST00000356352 LINC01547P58512 204 aaPredicted RBP4.63□□□□□ -1.67
UPF2-201ENST00000356352 H0Y9P7 68 aa4.62□□□□□ -1.67
UPF2-201ENST00000356352 COX6A2Q02221 97 aa4.62□□□□□ -1.67
UPF2-201ENST00000356352 Q6ZTC4 211 aa4.62□□□□□ -1.67
UPF2-201ENST00000356352 HCG22E2RYF7 251 aa4.62□□□□□ -1.67
UPF2-201ENST00000356352 IGLV4-60A0A075B6I1 120 aa4.62□□□□□ -1.67
UPF2-201ENST00000356352 RETNQ9HD89 108 aa4.62□□□□□ -1.67
UPF2-201ENST00000356352 PRM2P04554 102 aa4.61□□□□□ -1.67
UPF2-201ENST00000356352 GAS8-AS1O95177 125 aa4.61□□□□□ -1.67
UPF2-201ENST00000356352 LINC00694P0DN24 101 aa4.61□□□□□ -1.67
UPF2-201ENST00000356352 C9orf116Q5BN46 136 aaPredicted RBP4.61□□□□□ -1.67
UPF2-201ENST00000356352 LINC00575Q6W349 94 aa4.61□□□□□ -1.67
UPF2-201ENST00000356352 SPTAN1Q13813 2472 aaKnown RBP4.61□□□□□ -1.67
UPF2-201ENST00000356352 LYPD5Q6UWN5 251 aa4.61□□□□□ -1.67
UPF2-201ENST00000356352 X6R8D5 127 aa4.61□□□□□ -1.67
UPF2-201ENST00000356352 AVPP01185 164 aa4.61□□□□□ -1.67
UPF2-201ENST00000356352 Q8N3U1 123 aa4.6□□□□□ -1.67
UPF2-201ENST00000356352 GPR179Q6PRD1 2367 aa4.6□□□□□ -1.67
UPF2-201ENST00000356352 A0A087WSZ3 146 aa4.6□□□□□ -1.67
UPF2-201ENST00000356352 PMAIP1Q13794 54 aa4.6□□□□□ -1.67
UPF2-201ENST00000356352 CXCL6P80162 114 aa4.6□□□□□ -1.67
UPF2-201ENST00000356352 PCOTHQ58A44 107 aa4.59□□□□□ -1.68
UPF2-201ENST00000356352 A0A1B0GW54 56 aa4.59□□□□□ -1.68
UPF2-201ENST00000356352 TSPEAR-AS2P59090 65 aa4.59□□□□□ -1.68
UPF2-201ENST00000356352 TP53AIP1Q9HCN2 124 aa4.59□□□□□ -1.68
UPF2-201ENST00000356352 HIVEP2P31629 2446 aa4.58□□□□□ -1.68
UPF2-201ENST00000356352 LINC00337Q8N6G1 96 aa4.58□□□□□ -1.68
UPF2-201ENST00000356352 PCNX2A6NKB5 2137 aa4.58□□□□□ -1.68
UPF2-201ENST00000356352 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.58□□□□□ -1.683e-8■■■■■ 40.2
UPF2-201ENST00000356352 EDN2P20800 178 aa4.58□□□□□ -1.68
UPF2-201ENST00000356352 SHANK1Q9Y566 2161 aa4.58□□□□□ -1.68
UPF2-201ENST00000356352 CACNA1GO43497 2377 aa4.58□□□□□ -1.68
UPF2-201ENST00000356352 RIF1Q5UIP0 2472 aaKnown RBP4.58□□□□□ -1.68
UPF2-201ENST00000356352 RETNLBQ9BQ08 111 aa4.58□□□□□ -1.68
UPF2-201ENST00000356352 MUC22E2RYF6 1773 aaPredicted RBP4.58□□□□□ -1.68
UPF2-201ENST00000356352 ADAMTSL4-AS1Q5T5F5 129 aa4.57□□□□□ -1.68
UPF2-201ENST00000356352 TMEM254Q8TBM7 123 aa4.57□□□□□ -1.68
UPF2-201ENST00000356352 URB1-AS1Q96HZ7 61 aa4.57□□□□□ -1.68
UPF2-201ENST00000356352 NCOA6Q14686 2063 aaPredicted RBP4.57□□□□□ -1.68
UPF2-201ENST00000356352 A0A087WVE0 104 aa4.57□□□□□ -1.68
UPF2-201ENST00000356352 SPINK1P00995 79 aa4.57□□□□□ -1.68
UPF2-201ENST00000356352 PRR3P79522 188 aaKnown RBP4.57□□□□□ -1.68
UPF2-201ENST00000356352 SMR3AQ99954 134 aa4.57□□□□□ -1.68
UPF2-201ENST00000356352 SOSTDC1Q6X4U4 206 aa4.57□□□□□ -1.68
UPF2-201ENST00000356352 Q6ZRU5 148 aa4.56□□□□□ -1.68
UPF2-201ENST00000356352 SMCR5Q8TEV8 140 aa4.56□□□□□ -1.68
UPF2-201ENST00000356352 C22orf24Q9Y442 160 aa4.56□□□□□ -1.68
UPF2-201ENST00000356352 TECTAO75443 2155 aa4.56□□□□□ -1.68
UPF2-201ENST00000356352 FHL3Q13643 280 aa4.56□□□□□ -1.68
UPF2-201ENST00000356352 CDSNQ15517 529 aa4.56□□□□□ -1.68
UPF2-201ENST00000356352 SBSPONQ8IVN8 264 aa4.56□□□□□ -1.68
UPF2-201ENST00000356352 C1orf64Q8NEQ6 169 aa4.56□□□□□ -1.68
UPF2-201ENST00000356352 BCE1O60756 84 aa4.56□□□□□ -1.68
UPF2-201ENST00000356352 C7orf65Q6ZTY9 151 aa4.56□□□□□ -1.68
UPF2-201ENST00000356352 DSCAMO60469 2012 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms