RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ENHOQ6UWT2 76 aa7.57□□□□□ -1.2
CCDC88A-202ENST00000336838 KLK5Q9Y337 293 aaPredicted RBP7.57□□□□□ -1.2
CCDC88A-202ENST00000336838 C20orf197Q8N268 126 aa7.57□□□□□ -1.2
CCDC88A-202ENST00000336838 PRR15LQ9BU68 103 aa7.57□□□□□ -1.2
CCDC88A-202ENST00000336838 PRO3102Q9H379 93 aa7.57□□□□□ -1.2
CCDC88A-202ENST00000336838 M0R378 163 aa7.56□□□□□ -1.2
CCDC88A-202ENST00000336838 CCKP06307 115 aa7.56□□□□□ -1.2
CCDC88A-202ENST00000336838 LINC01548A6NM66 108 aa7.56□□□□□ -1.2
CCDC88A-202ENST00000336838 IGHV4-31P0DP07 118 aa7.56□□□□□ -1.2
CCDC88A-202ENST00000336838 IGLV2-18A0A075B6J9 118 aa7.56□□□□□ -1.2
CCDC88A-202ENST00000336838 TRAV7A0A075B6U4 112 aa7.56□□□□□ -1.2
CCDC88A-202ENST00000336838 C11orf21Q9P2W6 132 aa7.56□□□□□ -1.2
CCDC88A-202ENST00000336838 LELP1Q5T871 98 aa7.55□□□□□ -1.2
CCDC88A-202ENST00000336838 SERP1Q9Y6X1 66 aa7.55□□□□□ -1.2
CCDC88A-202ENST00000336838 A0A087WZ39 114 aa7.55□□□□□ -1.2
CCDC88A-202ENST00000336838 F8W735 103 aaPredicted RBP7.55□□□□□ -1.2
CCDC88A-202ENST00000336838 PRR9Q5T870 116 aa7.55□□□□□ -1.2
CCDC88A-202ENST00000336838 CDC42SE2Q9NRR3 84 aa7.55□□□□□ -1.2
CCDC88A-202ENST00000336838 JMJD1CQ15652 2540 aa7.54□□□□□ -1.2
CCDC88A-202ENST00000336838 DEFB1P60022 68 aa7.54□□□□□ -1.2
CCDC88A-202ENST00000336838 BRK1Q8WUW1 75 aa7.54□□□□□ -1.2
CCDC88A-202ENST00000336838 ZNF706Q9Y5V0 76 aaPredicted RBP7.54□□□□□ -1.2
CCDC88A-202ENST00000336838 SEC61GP60059 68 aa7.54□□□□□ -1.2
CCDC88A-202ENST00000336838 TRBV7-7A0A0K0K1E9 115 aa7.53□□□□□ -1.2
CCDC88A-202ENST00000336838 BEAN1Q3B7T3 259 aa7.53□□□□□ -1.2
CCDC88A-202ENST00000336838 TRBV10-3A0A0K0K1G6 114 aa7.53□□□□□ -1.2
CCDC88A-202ENST00000336838 IGHV4-28A0A0C4DH34 117 aa7.53□□□□□ -1.2
CCDC88A-202ENST00000336838 C22orf34Q6ZV56 151 aa7.53□□□□□ -1.2
CCDC88A-202ENST00000336838 SMIM11BQ8TCY0 68 aa7.53□□□□□ -1.2
CCDC88A-202ENST00000336838 A0A1B0GW54 56 aa7.53□□□□□ -1.2
CCDC88A-202ENST00000336838 HILS1P60008 231 aa7.53□□□□□ -1.2
CCDC88A-202ENST00000336838 SMIM26A0A096LP01 95 aa7.52□□□□□ -1.2
CCDC88A-202ENST00000336838 A0A1B0GUV1 79 aa7.52□□□□□ -1.21
CCDC88A-202ENST00000336838 C11orf45Q8TAV5 145 aa7.52□□□□□ -1.21
CCDC88A-202ENST00000336838 LINC00474Q9P2X8 69 aa7.52□□□□□ -1.21
CCDC88A-202ENST00000336838 ZNF73O43830 326 aaPredicted RBP7.52□□□□□ -1.21
CCDC88A-202ENST00000336838 ZNF702PQ9H963 129 aa7.52□□□□□ -1.21
CCDC88A-202ENST00000336838 C6orf99Q4VX62 202 aa7.52□□□□□ -1.21
CCDC88A-202ENST00000336838 A0A096LNJ9 63 aa7.52□□□□□ -1.21
CCDC88A-202ENST00000336838 Q6ZS46 218 aa7.51□□□□□ -1.21
CCDC88A-202ENST00000336838 BCE1O60756 84 aa7.51□□□□□ -1.21
CCDC88A-202ENST00000336838 C4orf48Q5BLP8 95 aa7.51□□□□□ -1.21
CCDC88A-202ENST00000336838 Q8N814 137 aa7.51□□□□□ -1.21
CCDC88A-202ENST00000336838 F8P00451 2351 aa7.5□□□□□ -1.21
CCDC88A-202ENST00000336838 LINC00959A0A1B0GUT2 108 aa7.5□□□□□ -1.21
CCDC88A-202ENST00000336838 SMIM1B2RUZ4 78 aa7.5□□□□□ -1.21
CCDC88A-202ENST00000336838 POM121L12Q8N7R1 296 aa7.5□□□□□ -1.21
CCDC88A-202ENST00000336838 PPDPFQ9H3Y8 114 aa7.5□□□□□ -1.21
CCDC88A-202ENST00000336838 H0Y9J4 135 aa7.5□□□□□ -1.21
CCDC88A-202ENST00000336838 WISP2O76076 250 aa7.5□□□□□ -1.21
CCDC88A-202ENST00000336838 LINC00242Q5T6M2 205 aa7.5□□□□□ -1.21
CCDC88A-202ENST00000336838 SYCNQ0VAF6 134 aa7.5□□□□□ -1.21
CCDC88A-202ENST00000336838 CCDC179H3BU77 68 aa7.49□□□□□ -1.21
CCDC88A-202ENST00000336838 CXCL6P80162 114 aa7.49□□□□□ -1.21
CCDC88A-202ENST00000336838 LOC107984640A0A0U1RRK4 108 aa7.49□□□□□ -1.21
CCDC88A-202ENST00000336838 NTM-AS1Q6ZSK4 140 aa7.49□□□□□ -1.21
CCDC88A-202ENST00000336838 EGFEM1PQ0D2K5 195 aa7.48□□□□□ -1.21
CCDC88A-202ENST00000336838 Q6ZSV7 163 aa7.47□□□□□ -1.21
CCDC88A-202ENST00000336838 Q6ZQY7 126 aa7.47□□□□□ -1.21
CCDC88A-202ENST00000336838 CENPFP49454 3210 aa7.46□□□□□ -1.21
CCDC88A-202ENST00000336838 IGKV4-1P06312 121 aa7.45□□□□□ -1.22
CCDC88A-202ENST00000336838 PLA2G5P39877 138 aa7.45□□□□□ -1.22
CCDC88A-202ENST00000336838 GAS8-AS1O95177 125 aa7.45□□□□□ -1.22
CCDC88A-202ENST00000336838 RPS28P62857 69 aaKnown RBP7.45□□□□□ -1.22
CCDC88A-202ENST00000336838 TRAV10A0A0B4J240 114 aa7.44□□□□□ -1.22
CCDC88A-202ENST00000336838 IGLV5-39A0A0G2JS06 123 aa7.44□□□□□ -1.22
CCDC88A-202ENST00000336838 TRBV7-6A0A0J9YX20 115 aa7.44□□□□□ -1.22
CCDC88A-202ENST00000336838 SVIPQ8NHG7 77 aa7.44□□□□□ -1.22
CCDC88A-202ENST00000336838 DEFB131BA0A096LNP1 70 aa7.43□□□□□ -1.22
CCDC88A-202ENST00000336838 IGLV5-45A0A087WSX0 123 aa7.43□□□□□ -1.22
CCDC88A-202ENST00000336838 K7ERS5 55 aa7.43□□□□□ -1.22
CCDC88A-202ENST00000336838 C2orf48Q96LS8 159 aa7.43□□□□□ -1.22
CCDC88A-202ENST00000336838 FAM19A4Q96LR4 140 aa7.43□□□□□ -1.22
CCDC88A-202ENST00000336838 SLPIP03973 132 aa7.42□□□□□ -1.22
CCDC88A-202ENST00000336838 TSPEAR-AS2P59090 65 aa7.42□□□□□ -1.22
CCDC88A-202ENST00000336838 KLK9Q2XQG4 91 aa7.42□□□□□ -1.22
CCDC88A-202ENST00000336838 SHISA2Q6UWI4 295 aa7.41□□□□□ -1.22
CCDC88A-202ENST00000336838 PRYO14603 147 aa7.41□□□□□ -1.22
CCDC88A-202ENST00000336838 LINC00694P0DN24 101 aa7.41□□□□□ -1.22
CCDC88A-202ENST00000336838 PROK1P58294 105 aa7.41□□□□□ -1.22
CCDC88A-202ENST00000336838 CDIP1Q9H305 208 aa7.41□□□□□ -1.22
CCDC88A-202ENST00000336838 IGLV1-51P01701 117 aa7.4□□□□□ -1.22
CCDC88A-202ENST00000336838 C1orf158Q8N1D5 194 aa7.4□□□□□ -1.22
CCDC88A-202ENST00000336838 ADAMTSL4-AS1Q5T5F5 129 aa7.4□□□□□ -1.22
CCDC88A-202ENST00000336838 CRYGAP11844 174 aa7.4□□□□□ -1.22
CCDC88A-202ENST00000336838 C19orf84I3L1E1 186 aa7.4□□□□□ -1.23
CCDC88A-202ENST00000336838 KIF25-AS1Q9Y6Z4 181 aa7.4□□□□□ -1.23
CCDC88A-202ENST00000336838 KPRPQ5T749 579 aaPredicted RBP7.39□□□□□ -1.23
CCDC88A-202ENST00000336838 FAM19A1Q7Z5A9 133 aa7.39□□□□□ -1.23
CCDC88A-202ENST00000336838 C16orf95Q9H693 158 aa7.39□□□□□ -1.23
CCDC88A-202ENST00000336838 SBSPONQ8IVN8 264 aa7.39□□□□□ -1.23
CCDC88A-202ENST00000336838 BBC3Q96PG8 261 aaPredicted RBP7.39□□□□□ -1.23
CCDC88A-202ENST00000336838 SPTSSBQ8NFR3 76 aa7.39□□□□□ -1.23
CCDC88A-202ENST00000336838 ESM1Q9NQ30 184 aa7.39□□□□□ -1.23
CCDC88A-202ENST00000336838 CYSRT1A8MQ03 144 aa7.38□□□□□ -1.23
CCDC88A-202ENST00000336838 NRGNQ92686 78 aa7.38□□□□□ -1.23
CCDC88A-202ENST00000336838 HIGD2AQ9BW72 106 aa7.38□□□□□ -1.23
CCDC88A-202ENST00000336838 DEFB4AO15263 64 aa7.38□□□□□ -1.23
CCDC88A-202ENST00000336838 MPLKIPQ8TAP9 179 aa7.38□□□□□ -1.23
CCDC88A-202ENST00000336838 ODF3L2Q3SX64 289 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 163.8 ms