RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 RPL13AP40429 203 aaKnown RBP15.67■□□□□ 0.1
TPM4-201ENST00000300933 ICOSQ9Y6W8 199 aa15.67■□□□□ 0.1
TPM4-201ENST00000300933 EDA2RQ9HAV5 297 aa15.66■□□□□ 0.1
TPM4-201ENST00000300933 PIK3CD-AS1Q5SR53 167 aa15.65■□□□□ 0.1
TPM4-201ENST00000300933 SMIM20Q8N5G0 67 aa15.65■□□□□ 0.1
TPM4-201ENST00000300933 IL17DQ8TAD2 202 aa15.65■□□□□ 0.1
TPM4-201ENST00000300933 LITAFQ99732 161 aa15.65■□□□□ 0.1
TPM4-201ENST00000300933 F8P00451 2351 aa15.64■□□□□ 0.09
TPM4-201ENST00000300933 PLAC8L1A1L4L8 177 aa15.64■□□□□ 0.09
TPM4-201ENST00000300933 TRGV2A0A075B6R0 118 aa15.63■□□□□ 0.09
TPM4-201ENST00000300933 LOC100131303A0A0U1RQF7 123 aa15.63■□□□□ 0.09
TPM4-201ENST00000300933 UBE2D4Q9Y2X8 147 aa15.63■□□□□ 0.09
TPM4-201ENST00000300933 LINC00482Q8N8I6 264 aa15.62■□□□□ 0.09
TPM4-201ENST00000300933 CSNK1G2-AS1Q8NCQ2 148 aa15.62■□□□□ 0.09
TPM4-201ENST00000300933 Q6Q795 121 aa15.61■□□□□ 0.09
TPM4-201ENST00000300933 C3orf56Q8N813 242 aa15.61■□□□□ 0.09
TPM4-201ENST00000300933 DAND5Q8N907 189 aa15.61■□□□□ 0.09
TPM4-201ENST00000300933 NDUFA12Q9UI09 145 aa15.61■□□□□ 0.09
TPM4-201ENST00000300933 LINC00694P0DN24 101 aa15.61■□□□□ 0.09
TPM4-201ENST00000300933 COX6CP09669 75 aa15.6■□□□□ 0.09
TPM4-201ENST00000300933 CHCHD5Q9BSY4 110 aa15.6■□□□□ 0.09
TPM4-201ENST00000300933 HERV-K104P63124 156 aa15.59■□□□□ 0.09
TPM4-201ENST00000300933 PYGO1Q9Y3Y4 419 aa15.59■□□□□ 0.09
TPM4-201ENST00000300933 MEIG1Q5JSS6 88 aa15.58■□□□□ 0.08
TPM4-201ENST00000300933 K7EQD1 137 aa15.58■□□□□ 0.08
TPM4-201ENST00000300933 NTM-AS1Q6ZSK4 140 aa15.58■□□□□ 0.08
TPM4-201ENST00000300933 DNAJC30Q96LL9 226 aa15.58■□□□□ 0.08
TPM4-201ENST00000300933 CMC4P56277 68 aaPredicted RBP15.57■□□□□ 0.08
TPM4-201ENST00000300933 SHISA2Q6UWI4 295 aa15.57■□□□□ 0.08
TPM4-201ENST00000300933 IGHV1-58A0A0C4DH39 117 aa15.56■□□□□ 0.08
TPM4-201ENST00000300933 DGAT2L7PQ6IED9 249 aa15.56■□□□□ 0.08
TPM4-201ENST00000300933 DEFB130BP0DP73 79 aa15.56■□□□□ 0.08
TPM4-201ENST00000300933 DEFB130AP0DP74 79 aa15.56■□□□□ 0.08
TPM4-201ENST00000300933 C16orf74Q96GX8 76 aa15.56■□□□□ 0.08
TPM4-201ENST00000300933 RPL36AP83881 106 aaKnown RBP15.55■□□□□ 0.08
TPM4-201ENST00000300933 MIAQ16674 131 aa15.55■□□□□ 0.08
TPM4-201ENST00000300933 RPL36ALQ969Q0 106 aaKnown RBP15.55■□□□□ 0.08
TPM4-201ENST00000300933 LINC01600Q96MT4 127 aa15.55■□□□□ 0.08
TPM4-201ENST00000300933 H3BT86 120 aa15.55■□□□□ 0.08
TPM4-201ENST00000300933 MRPS36P82909 103 aaKnown RBP15.55■□□□□ 0.08
TPM4-201ENST00000300933 DAZ2Q13117 558 aaKnown RBP15.55■□□□□ 0.08
TPM4-201ENST00000300933 FAM110AQ9BQ89 295 aa15.53■□□□□ 0.08
TPM4-201ENST00000300933 SPANXDQ9BXN6 97 aa15.53■□□□□ 0.08
TPM4-201ENST00000300933 SPANXCQ9NY87 97 aa15.53■□□□□ 0.08
TPM4-201ENST00000300933 LST1O00453 97 aa15.53■□□□□ 0.08
TPM4-201ENST00000300933 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.53■□□□□ 0.08
TPM4-201ENST00000300933 SPANXA1Q9NS26 97 aa15.53■□□□□ 0.08
TPM4-201ENST00000300933 VSIG2Q96IQ7 327 aa15.52■□□□□ 0.08
TPM4-201ENST00000300933 TRGV4A0A0C4DH28 118 aa15.52■□□□□ 0.07
TPM4-201ENST00000300933 A0A0U1RRA0 63 aa15.51■□□□□ 0.07
TPM4-201ENST00000300933 DEFB4AO15263 64 aa15.51■□□□□ 0.07
TPM4-201ENST00000300933 COX6A2Q02221 97 aa15.51■□□□□ 0.07
TPM4-201ENST00000300933 CDKN2A-AS1Q9UH64 79 aa15.51■□□□□ 0.07
TPM4-201ENST00000300933 TRAV13-1A0A0B4J241 112 aa15.5■□□□□ 0.07
TPM4-201ENST00000300933 ZNF625Q96I27 306 aaPredicted RBP15.48■□□□□ 0.07
TPM4-201ENST00000300933 TRBV10-1A0A0K0K1A3 114 aa15.47■□□□□ 0.07
TPM4-201ENST00000300933 STAB1Q9NY15 2570 aa15.46■□□□□ 0.07
TPM4-201ENST00000300933 TINCRA0A1B0GVN0 87 aa15.46■□□□□ 0.07
TPM4-201ENST00000300933 DAZ4Q86SG3 579 aaKnown RBP15.46■□□□□ 0.07
TPM4-201ENST00000300933 OVOL2Q9BRP0 275 aa15.46■□□□□ 0.07
TPM4-201ENST00000300933 DAZ3Q9NR90 486 aaKnown RBP15.46■□□□□ 0.07
TPM4-201ENST00000300933 IGKV3OR2-268A0A0C4DH90 116 aa15.45■□□□□ 0.06
TPM4-201ENST00000300933 FAM236AA0A1B0GUQ0 79 aa15.45■□□□□ 0.06
TPM4-201ENST00000300933 FAM236BA0A1B0GV22 79 aa15.45■□□□□ 0.06
TPM4-201ENST00000300933 FHL2Q14192 279 aa15.45■□□□□ 0.06
TPM4-201ENST00000300933 MRPL23Q16540 153 aaKnown RBP15.45■□□□□ 0.06
TPM4-201ENST00000300933 FAM240AA0A1B0GVK7 77 aa15.45■□□□□ 0.06
TPM4-201ENST00000300933 DEFB135Q30KP9 77 aa15.44■□□□□ 0.06
TPM4-201ENST00000300933 PKD1L1Q8TDX9 2849 aa15.44■□□□□ 0.06
TPM4-201ENST00000300933 DEFB121Q5J5C9 76 aa15.43■□□□□ 0.06
TPM4-201ENST00000300933 LINC00242Q5T6M2 205 aa15.42■□□□□ 0.06
TPM4-201ENST00000300933 A0A096LPF7 62 aa15.42■□□□□ 0.06
TPM4-201ENST00000300933 TMEM101Q96IK0 257 aa15.42■□□□□ 0.06
TPM4-201ENST00000300933 X6R8D5 127 aa15.41■□□□□ 0.06
TPM4-201ENST00000300933 TRBV7-7A0A0K0K1E9 115 aa15.41■□□□□ 0.06
TPM4-201ENST00000300933 C9orf66Q5T8R8 295 aa15.41■□□□□ 0.06
TPM4-201ENST00000300933 FBN1P35555 2871 aaKnown RBP15.41■□□□□ 0.06
TPM4-201ENST00000300933 UBE2L6O14933 153 aa15.4■□□□□ 0.06
TPM4-201ENST00000300933 TRBV6-4A0A1B0GX49 114 aa15.4■□□□□ 0.06
TPM4-201ENST00000300933 SMCR5Q8TEV8 140 aa15.4■□□□□ 0.06
TPM4-201ENST00000300933 TMEM243Q9BU79 118 aa15.4■□□□□ 0.06
TPM4-201ENST00000300933 CDC42SE2Q9NRR3 84 aa15.4■□□□□ 0.06
TPM4-201ENST00000300933 Q9H8V8 135 aa15.38■□□□□ 0.05
TPM4-201ENST00000300933 LINC00308Q8TCZ7 52 aa15.37■□□□□ 0.05
TPM4-201ENST00000300933 CIRBPQ14011 172 aaKnown RBP15.37■□□□□ 0.05
TPM4-201ENST00000300933 FAM222AQ5U5X8 452 aa15.36■□□□□ 0.05
TPM4-201ENST00000300933 MAST4O15021 2626 aa15.36■□□□□ 0.05
TPM4-201ENST00000300933 IGLV4-60A0A075B6I1 120 aa15.36■□□□□ 0.05
TPM4-201ENST00000300933 NDUFA1O15239 70 aa15.35■□□□□ 0.05
TPM4-201ENST00000300933 CFAP161Q6P656 301 aa15.35■□□□□ 0.05
TPM4-201ENST00000300933 TIMM17BO60830 172 aa15.34■□□□□ 0.05
TPM4-201ENST00000300933 GYPEP15421 78 aa15.34■□□□□ 0.05
TPM4-201ENST00000300933 COX7A2LO14548 114 aa15.34■□□□□ 0.05
TPM4-201ENST00000300933 TIRAPP58753 221 aa15.33■□□□□ 0.05
TPM4-201ENST00000300933 SOSTDC1Q6X4U4 206 aa15.33■□□□□ 0.04
TPM4-201ENST00000300933 TRBV6-8A0A0A6YYG3 113 aa15.32■□□□□ 0.04
TPM4-201ENST00000300933 HERVK_113P63121 156 aa15.32■□□□□ 0.04
TPM4-201ENST00000300933 PPDPFQ9H3Y8 114 aa15.31■□□□□ 0.04
TPM4-201ENST00000300933 CSDC2Q9Y534 153 aaKnown RBP15.31■□□□□ 0.04
TPM4-201ENST00000300933 IGLV5-45A0A087WSX0 123 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms