RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 TRAV4A0A0B4J268 109 aa15.14■□□□□ 0.01
TRIM28-201ENST00000253024 DEFB4AO15263 64 aa15.14■□□□□ 0.01
TRIM28-201ENST00000253024 CIRBPQ14011 172 aaKnown RBP15.14■□□□□ 0.01
TRIM28-201ENST00000253024 DNAJC30Q96LL9 226 aa15.14■□□□□ 0.01
TRIM28-201ENST00000253024 SPANXDQ9BXN6 97 aa15.14■□□□□ 0.01
TRIM28-201ENST00000253024 SPANXCQ9NY87 97 aa15.14■□□□□ 0.01
TRIM28-201ENST00000253024 OTOGQ6ZRI0 2925 aa15.14■□□□□ 0.01
TRIM28-201ENST00000253024 CHCHD5Q9BSY4 110 aa15.13■□□□□ 0.01
TRIM28-201ENST00000253024 TRBV30A0A0K0K1B3 111 aa15.13■□□□□ 0.01
TRIM28-201ENST00000253024 IGLV4-60A0A075B6I1 120 aa15.12■□□□□ 0.01
TRIM28-201ENST00000253024 C5orf38Q86SI9 138 aa15.12■□□□□ 0.01
TRIM28-201ENST00000253024 EDA2RQ9HAV5 297 aa15.12■□□□□ 0.01
TRIM28-201ENST00000253024 HERVK_113P63121 156 aa15.12■□□□□ 0.01
TRIM28-201ENST00000253024 UBE2WQ96B02 151 aa15.12■□□□□ 0.01
TRIM28-201ENST00000253024 TRBV10-2A0A0K0K1G8 114 aa15.12■□□□□ 0.01
TRIM28-201ENST00000253024 TRRAPQ9Y4A5 3859 aa15.12■□□□□ 0.01
TRIM28-201ENST00000253024 NDUFA1O15239 70 aa15.11■□□□□ 0.01
TRIM28-201ENST00000253024 CDC42SE2Q9NRR3 84 aa15.11■□□□□ 0.01
TRIM28-201ENST00000253024 PFN2P35080 140 aa15.11■□□□□ 0.01
TRIM28-201ENST00000253024 ANK3Q12955 4377 aaKnown RBP15.11■□□□□ 0.01
TRIM28-201ENST00000253024 RNF183Q96D59 192 aa15.1■□□□□ 0.01
TRIM28-201ENST00000253024 TRAV8-4A0A0B4J246 113 aa15.1■□□□□ 0.01
TRIM28-201ENST00000253024 TMEM243Q9BU79 118 aa15.09■□□□□ 0.01
TRIM28-201ENST00000253024 TIRAPP58753 221 aa15.08■□□□□ 0
TRIM28-201ENST00000253024 Q9HAA7 133 aa15.08■□□□□ 0
TRIM28-201ENST00000253024 TMEM262E9PQX1 116 aa15.07■□□□□ 0
TRIM28-201ENST00000253024 PLAC8L1A1L4L8 177 aa15.07■□□□□ 0
TRIM28-201ENST00000253024 SNCGO76070 127 aa15.06■□□□□ 0
TRIM28-201ENST00000253024 SPATA3Q8NHX4 192 aa15.06■□□□□ 0
TRIM28-201ENST00000253024 TEX29Q8N6K0 151 aa15.06■□□□□ 0
TRIM28-201ENST00000253024 C15orf53Q8NAA6 179 aa15.06■□□□□ 0
TRIM28-201ENST00000253024 DAZ2Q13117 558 aaKnown RBP15.05■□□□□ 0
TRIM28-201ENST00000253024 DAZ4Q86SG3 579 aaKnown RBP15.05■□□□□ 0
TRIM28-201ENST00000253024 DAZ3Q9NR90 486 aaKnown RBP15.05■□□□□ 0
TRIM28-201ENST00000253024 LINC00158P58513 81 aa15.05■□□□□ -0
TRIM28-201ENST00000253024 MIR7-3HGQ8N6C7 128 aa15.05■□□□□ -0
TRIM28-201ENST00000253024 ANAPC13Q9BS18 74 aa15.05■□□□□ -0
TRIM28-201ENST00000253024 LINC00482Q8N8I6 264 aa15.04■□□□□ -0
TRIM28-201ENST00000253024 LST1O00453 97 aa15.04■□□□□ -0
TRIM28-201ENST00000253024 SVIPQ8NHG7 77 aa15.04■□□□□ -0
TRIM28-201ENST00000253024 IGLV5-45A0A087WSX0 123 aa15.03■□□□□ -0
TRIM28-201ENST00000253024 IGLV5-39A0A0G2JS06 123 aa15.03■□□□□ -0
TRIM28-201ENST00000253024 F5H768 121 aa15.03■□□□□ -0
TRIM28-201ENST00000253024 IL17DQ8TAD2 202 aa15.03■□□□□ -0
TRIM28-201ENST00000253024 TEP1Q99973 2627 aaKnown RBP15.03■□□□□ -0
TRIM28-201ENST00000253024 XCL1P47992 114 aa15.02■□□□□ -0
TRIM28-201ENST00000253024 FAM218AQ96MZ4 157 aa15.02■□□□□ -0
TRIM28-201ENST00000253024 LRRC75A-AS1Q8N1F1 130 aa15.02□□□□□ -0.01
TRIM28-201ENST00000253024 Q8N3U1 123 aa15.01□□□□□ -0.01
TRIM28-201ENST00000253024 GAGE2BQ13066 116 aa15□□□□□ -0.01
TRIM28-201ENST00000253024 GAGE2EQ4V326 116 aa15□□□□□ -0.01
TRIM28-201ENST00000253024 GAGE2DQ9UEU5 116 aa15□□□□□ -0.01
TRIM28-201ENST00000253024 SS18L2Q9UHA2 77 aa15□□□□□ -0.01
TRIM28-201ENST00000253024 TRAV25A0A0B4J276 109 aa15□□□□□ -0.01
TRIM28-201ENST00000253024 TRBV10-1A0A0K0K1A3 114 aa15□□□□□ -0.01
TRIM28-201ENST00000253024 C19orf73Q9NVV2 129 aa14.99□□□□□ -0.01
TRIM28-201ENST00000253024 IGLV10-54A0A075B6I4 117 aa14.98□□□□□ -0.01
TRIM28-201ENST00000253024 IFITM1P13164 125 aa14.98□□□□□ -0.01
TRIM28-201ENST00000253024 KRTAP1-1Q07627 177 aa14.98□□□□□ -0.01
TRIM28-201ENST00000253024 C16orf74Q96GX8 76 aa14.98□□□□□ -0.01
TRIM28-201ENST00000253024 PF4P02776 101 aa14.98□□□□□ -0.01
TRIM28-201ENST00000253024 ATP5G1P05496 136 aa14.98□□□□□ -0.01
TRIM28-201ENST00000253024 OR13C6PQ8NH95 151 aa14.97□□□□□ -0.01
TRIM28-201ENST00000253024 C3orf56Q8N813 242 aa14.97□□□□□ -0.01
TRIM28-201ENST00000253024 IGLV1-51P01701 117 aa14.97□□□□□ -0.01
TRIM28-201ENST00000253024 FHL2Q14192 279 aa14.97□□□□□ -0.01
TRIM28-201ENST00000253024 COX7B2Q8TF08 81 aa14.97□□□□□ -0.01
TRIM28-201ENST00000253024 GYPEP15421 78 aa14.96□□□□□ -0.02
TRIM28-201ENST00000253024 LINC00337Q8N6G1 96 aa14.96□□□□□ -0.02
TRIM28-201ENST00000253024 TMEM86BQ8N661 226 aa14.94□□□□□ -0.02
TRIM28-201ENST00000253024 CSNK1G2-AS1Q8NCQ2 148 aa14.94□□□□□ -0.02
TRIM28-201ENST00000253024 SND1-IT1Q9HBX3 110 aa14.94□□□□□ -0.02
TRIM28-201ENST00000253024 TRBV6-8A0A0A6YYG3 113 aa14.94□□□□□ -0.02
TRIM28-201ENST00000253024 TIMM17BO60830 172 aa14.94□□□□□ -0.02
TRIM28-201ENST00000253024 KRTAP10-3P60369 221 aa14.94□□□□□ -0.02
TRIM28-201ENST00000253024 PRR3P79522 188 aaKnown RBP14.94□□□□□ -0.02
TRIM28-201ENST00000253024 PAX4O43316 350 aa14.93□□□□□ -0.02
TRIM28-201ENST00000253024 B5MCH6 92 aa14.92□□□□□ -0.02
TRIM28-201ENST00000253024 COX7A2LO14548 114 aa14.92□□□□□ -0.02
TRIM28-201ENST00000253024 HTN3P15516 51 aa14.92□□□□□ -0.02
TRIM28-201ENST00000253024 CITED1Q99966 193 aa14.92□□□□□ -0.02
TRIM28-201ENST00000253024 BAALC-AS2P0C853 105 aa14.92□□□□□ -0.02
TRIM28-201ENST00000253024 HIVEP1P15822 2718 aa14.91□□□□□ -0.02
TRIM28-201ENST00000253024 CRPP02741 224 aa14.91□□□□□ -0.02
TRIM28-201ENST00000253024 SLPIP03973 132 aa14.91□□□□□ -0.02
TRIM28-201ENST00000253024 H3BT86 120 aa14.91□□□□□ -0.02
TRIM28-201ENST00000253024 PKD1L1Q8TDX9 2849 aa14.91□□□□□ -0.02
TRIM28-201ENST00000253024 DEFB135Q30KP9 77 aa14.9□□□□□ -0.02
TRIM28-201ENST00000253024 C6orf226Q5I0X4 101 aa14.9□□□□□ -0.02
TRIM28-201ENST00000253024 LINC00526Q96FQ7 95 aa14.9□□□□□ -0.02
TRIM28-201ENST00000253024 CSDC2Q9Y534 153 aaKnown RBP14.9□□□□□ -0.02
TRIM28-201ENST00000253024 IGKV2-28A0A075B6P5 120 aa14.89□□□□□ -0.03
TRIM28-201ENST00000253024 IGKV2D-28P01615 120 aa14.89□□□□□ -0.03
TRIM28-201ENST00000253024 TRBV6-4A0A1B0GX49 114 aa14.89□□□□□ -0.03
TRIM28-201ENST00000253024 C9orf129Q5T035 196 aaKnown RBP14.88□□□□□ -0.03
TRIM28-201ENST00000253024 A0A087WYN8 130 aa14.88□□□□□ -0.03
TRIM28-201ENST00000253024 RNASE1P07998 156 aaKnown RBP14.88□□□□□ -0.03
TRIM28-201ENST00000253024 NHLRC4P0CG21 123 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-201ENST00000253024 CCL18P55774 89 aa14.88□□□□□ -0.03
TRIM28-201ENST00000253024 CCDC179H3BU77 68 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms