RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 K7ERJ3 54 aa15.71■□□□□ 0.11
CDX1-201ENST00000231656 HERVK_113P63121 156 aa15.71■□□□□ 0.11
CDX1-201ENST00000231656 VAMP3Q15836 100 aa15.71■□□□□ 0.11
CDX1-201ENST00000231656 RAB37Q96AX2 223 aa15.71■□□□□ 0.11
CDX1-201ENST00000231656 STAB2Q8WWQ8 2551 aa15.71■□□□□ 0.1
CDX1-201ENST00000231656 HTN3P15516 51 aa15.7■□□□□ 0.1
CDX1-201ENST00000231656 UBE2V1Q13404 147 aa15.7■□□□□ 0.1
CDX1-201ENST00000231656 Q6ZTC4 211 aa15.7■□□□□ 0.1
CDX1-201ENST00000231656 F5H768 121 aa15.7■□□□□ 0.1
CDX1-201ENST00000231656 PAX4O43316 350 aa15.7■□□□□ 0.1
CDX1-201ENST00000231656 NANOS2P60321 138 aaKnown RBP15.7■□□□□ 0.1
CDX1-201ENST00000231656 C10orf126Q8N4M7 172 aa15.7■□□□□ 0.1
CDX1-201ENST00000231656 SRSF9Q13242 221 aaKnown RBP eCLIP15.69■□□□□ 0.1
CDX1-201ENST00000231656 TRAV13-1A0A0B4J241 112 aa15.68■□□□□ 0.1
CDX1-201ENST00000231656 CHCHD5Q9BSY4 110 aa15.68■□□□□ 0.1
CDX1-201ENST00000231656 A0A1B0GWB2 263 aa15.67■□□□□ 0.1
CDX1-201ENST00000231656 CCL25O15444 150 aa15.67■□□□□ 0.1
CDX1-201ENST00000231656 NHLRC4P0CG21 123 aaPredicted RBP15.67■□□□□ 0.1
CDX1-201ENST00000231656 H3BUT2 72 aa15.67■□□□□ 0.1
CDX1-201ENST00000231656 IGHV3-30P01768 117 aa15.66■□□□□ 0.1
CDX1-201ENST00000231656 IGHV3-30-5P0DP03 117 aa15.66■□□□□ 0.1
CDX1-201ENST00000231656 NAA38Q9BRA0 125 aaKnown RBP15.66■□□□□ 0.1
CDX1-201ENST00000231656 IGLV4-60A0A075B6I1 120 aa15.65■□□□□ 0.1
CDX1-201ENST00000231656 TRAV26-1A0A087WT03 109 aa15.65■□□□□ 0.1
CDX1-201ENST00000231656 A0A0J9YXY3 114 aa15.65■□□□□ 0.1
CDX1-201ENST00000231656 IGLV5-39A0A0G2JS06 123 aa15.64■□□□□ 0.1
CDX1-201ENST00000231656 ZFAND6Q6FIF0 208 aa15.64■□□□□ 0.09
CDX1-201ENST00000231656 NDUFA12Q9UI09 145 aa15.64■□□□□ 0.09
CDX1-201ENST00000231656 A0A096LPF7 62 aa15.62■□□□□ 0.09
CDX1-201ENST00000231656 TMEM238LA0A1B0GVL6 79 aa15.62■□□□□ 0.09
CDX1-201ENST00000231656 A0A1W2PPM0 123 aa15.62■□□□□ 0.09
CDX1-201ENST00000231656 A6NJY4 79 aa15.62■□□□□ 0.09
CDX1-201ENST00000231656 SMIM1B2RUZ4 78 aa15.61■□□□□ 0.09
CDX1-201ENST00000231656 LITAFQ99732 161 aa15.6■□□□□ 0.09
CDX1-201ENST00000231656 DEFB131BA0A096LNP1 70 aa15.59■□□□□ 0.09
CDX1-201ENST00000231656 TMEM238C9JI98 176 aa15.59■□□□□ 0.09
CDX1-201ENST00000231656 IGLL5B9A064 214 aa15.59■□□□□ 0.09
CDX1-201ENST00000231656 FBN3Q75N90 2809 aa15.58■□□□□ 0.09
CDX1-201ENST00000231656 NDUFA1O15239 70 aa15.58■□□□□ 0.08
CDX1-201ENST00000231656 A0A1B0GUV1 79 aa15.57■□□□□ 0.08
CDX1-201ENST00000231656 RBX1P62877 108 aa15.57■□□□□ 0.08
CDX1-201ENST00000231656 TRAV10A0A0B4J240 114 aa15.55■□□□□ 0.08
CDX1-201ENST00000231656 H3BNG1 76 aa15.55■□□□□ 0.08
CDX1-201ENST00000231656 K7EP34 96 aa15.55■□□□□ 0.08
CDX1-201ENST00000231656 MRPL23Q16540 153 aaKnown RBP15.55■□□□□ 0.08
CDX1-201ENST00000231656 ICOSQ9Y6W8 199 aa15.55■□□□□ 0.08
CDX1-201ENST00000231656 IGKV3OR2-268A0A0C4DH90 116 aa15.54■□□□□ 0.08
CDX1-201ENST00000231656 GAGE10A6NGK3 116 aa15.54■□□□□ 0.08
CDX1-201ENST00000231656 TMEM262E9PQX1 116 aa15.54■□□□□ 0.08
CDX1-201ENST00000231656 FABP2P12104 132 aa15.54■□□□□ 0.08
CDX1-201ENST00000231656 ADAMTSL4-AS1Q5T5F5 129 aa15.54■□□□□ 0.08
CDX1-201ENST00000231656 MUSTN1Q8IVN3 82 aa15.54■□□□□ 0.08
CDX1-201ENST00000231656 SPANXDQ9BXN6 97 aa15.54■□□□□ 0.08
CDX1-201ENST00000231656 SPANXCQ9NY87 97 aa15.54■□□□□ 0.08
CDX1-201ENST00000231656 TIMM17BO60830 172 aa15.53■□□□□ 0.08
CDX1-201ENST00000231656 GTF2H5Q6ZYL4 71 aa15.53■□□□□ 0.08
CDX1-201ENST00000231656 CFC1BP0CG36 223 aa15.52■□□□□ 0.08
CDX1-201ENST00000231656 CFC1P0CG37 223 aa15.52■□□□□ 0.08
CDX1-201ENST00000231656 SPCS1Q9Y6A9 102 aa15.52■□□□□ 0.08
CDX1-201ENST00000231656 IGHV3OR16-9A0A0B4J2B5 98 aa15.52■□□□□ 0.07
CDX1-201ENST00000231656 LINC00959A0A1B0GUT2 108 aa15.52■□□□□ 0.07
CDX1-201ENST00000231656 A4D1N5 150 aa15.51■□□□□ 0.07
CDX1-201ENST00000231656 APOMO95445 188 aa15.51■□□□□ 0.07
CDX1-201ENST00000231656 Q9H8V8 135 aa15.51■□□□□ 0.07
CDX1-201ENST00000231656 RPL24P83731 157 aaKnown RBP15.5■□□□□ 0.07
CDX1-201ENST00000231656 MIAQ16674 131 aa15.5■□□□□ 0.07
CDX1-201ENST00000231656 SH2D6Q7Z4S9 175 aa15.5■□□□□ 0.07
CDX1-201ENST00000231656 ZNF625Q96I27 306 aaPredicted RBP15.5■□□□□ 0.07
CDX1-201ENST00000231656 PGPEP1Q9NXJ5 209 aa15.49■□□□□ 0.07
CDX1-201ENST00000231656 EIF4EBP3O60516 100 aaPredicted RBP15.48■□□□□ 0.07
CDX1-201ENST00000231656 A0A087WZ39 114 aa15.47■□□□□ 0.07
CDX1-201ENST00000231656 TSPAN13O95857 204 aa15.47■□□□□ 0.07
CDX1-201ENST00000231656 LELP1Q5T871 98 aa15.47■□□□□ 0.07
CDX1-201ENST00000231656 SS18Q15532 418 aa15.45■□□□□ 0.06
CDX1-201ENST00000231656 A0A0B4J2C4 111 aa15.44■□□□□ 0.06
CDX1-201ENST00000231656 PRSS2P07478 247 aa15.44■□□□□ 0.06
CDX1-201ENST00000231656 Q8N3U1 123 aa15.44■□□□□ 0.06
CDX1-201ENST00000231656 COX7B2Q8TF08 81 aa15.44■□□□□ 0.06
CDX1-201ENST00000231656 CLPSL2Q6UWE3 100 aa15.44■□□□□ 0.06
CDX1-201ENST00000231656 PRO1854Q9UHT4 67 aa15.44■□□□□ 0.06
CDX1-201ENST00000231656 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.43■□□□□ 0.06
CDX1-201ENST00000231656 HERV-K104P63124 156 aa15.43■□□□□ 0.06
CDX1-201ENST00000231656 CIRBPQ14011 172 aaKnown RBP15.43■□□□□ 0.06
CDX1-201ENST00000231656 C5orf38Q86SI9 138 aa15.43■□□□□ 0.06
CDX1-201ENST00000231656 IFITM1P13164 125 aa15.42■□□□□ 0.06
CDX1-201ENST00000231656 LYPD5Q6UWN5 251 aa15.42■□□□□ 0.06
CDX1-201ENST00000231656 LINC00269Q8N2A0 174 aa15.42■□□□□ 0.06
CDX1-201ENST00000231656 C15orf53Q8NAA6 179 aa15.42■□□□□ 0.06
CDX1-201ENST00000231656 DNAH7Q8WXX0 4024 aa15.42■□□□□ 0.06
CDX1-201ENST00000231656 TGP01266 2768 aa15.41■□□□□ 0.06
CDX1-201ENST00000231656 XCL1P47992 114 aa15.41■□□□□ 0.06
CDX1-201ENST00000231656 DAND5Q8N907 189 aa15.41■□□□□ 0.06
CDX1-201ENST00000231656 CSMD3Q7Z407 3707 aa15.4■□□□□ 0.06
CDX1-201ENST00000231656 NPC2P61916 151 aa15.39■□□□□ 0.05
CDX1-201ENST00000231656 IGHV3-33P01772 117 aa15.39■□□□□ 0.05
CDX1-201ENST00000231656 ANGP03950 147 aaKnown RBP15.39■□□□□ 0.05
CDX1-201ENST00000231656 TOMM7Q9P0U1 55 aa15.39■□□□□ 0.05
CDX1-201ENST00000231656 REG3AQ06141 175 aa15.38■□□□□ 0.05
CDX1-201ENST00000231656 LINC01561Q8N1V8 128 aa15.38■□□□□ 0.05
CDX1-201ENST00000231656 DYNC2H1Q8NCM8 4307 aaKnown RBP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms