RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 BLCAPP62952 87 aa2.95□□□□□ -1.94
SCN1A-214ENST00000637038 LINC01620Q4KN68 170 aa2.95□□□□□ -1.94
SCN1A-214ENST00000637038 C2orf82Q6UX34 121 aa2.95□□□□□ -1.94
SCN1A-214ENST00000637038 Q6ZUT4 128 aa2.95□□□□□ -1.94
SCN1A-214ENST00000637038 MUSTN1Q8IVN3 82 aa2.95□□□□□ -1.94
SCN1A-214ENST00000637038 EDA2RQ9HAV5 297 aa2.95□□□□□ -1.94
SCN1A-214ENST00000637038 UTP20O75691 2785 aaKnown RBP2.95□□□□□ -1.94
SCN1A-214ENST00000637038 WNK2Q9Y3S1 2297 aa2.95□□□□□ -1.94
SCN1A-214ENST00000637038 IGHV1-58A0A0C4DH39 117 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 TRBV10-2A0A0K0K1G8 114 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 TINCRA0A1B0GVN0 87 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 H3BS24 57 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 TIMM17BO60830 172 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 TSHBP01222 138 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 IGHV3-33P01772 117 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 CRYGDP07320 174 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 HTN1P15515 57 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 CMC4P56277 68 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-214ENST00000637038 LINC00315P59091 139 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 KHDC1LQ5JSQ8 128 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 Q6ZQT7 251 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 UBE2E2Q96LR5 201 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 LINC01587Q99440 93 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 ANK2Q01484 3957 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 TLN1Q9Y490 2541 aaKnown RBP2.94□□□□□ -1.94
SCN1A-214ENST00000637038 IGLV4-3A0A075B6K6 122 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 TRAV12-2A0A075B6T6 113 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 A0A0J9YXV3 536 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 TRBV30A0A0K0K1B3 111 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 A8MZ25 164 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 PSMB8P28062 276 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 DEFB1P60022 68 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 SMR3AQ99954 134 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 SPANXCQ9NY87 97 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 CMYA5Q8N3K9 4069 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 POLQO75417 2590 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 IGHV3-64A0A075B6Q5 118 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 HERVK_113P63121 156 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 CFHR3Q02985 330 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 SBSPONQ8IVN8 264 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 ZNRF2Q8NHG8 242 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 OVOL2Q9BRP0 275 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 JPT2Q9H910 190 aa2.94□□□□□ -1.94
SCN1A-214ENST00000637038 A0A1W2PPR1 153 aa2.93□□□□□ -1.94
SCN1A-214ENST00000637038 IGHV3-30-3P0DP02 117 aa2.93□□□□□ -1.94
SCN1A-214ENST00000637038 INSL3P51460 131 aa2.93□□□□□ -1.94
SCN1A-214ENST00000637038 TNP2Q05952 138 aa2.93□□□□□ -1.94
SCN1A-214ENST00000637038 MIAQ16674 131 aa2.93□□□□□ -1.94
SCN1A-214ENST00000637038 TMEM263Q8WUH6 116 aaKnown RBP2.93□□□□□ -1.94
SCN1A-214ENST00000637038 TMEM101Q96IK0 257 aa2.93□□□□□ -1.94
SCN1A-214ENST00000637038 MXRA5Q9NR99 2828 aa2.93□□□□□ -1.94
SCN1A-214ENST00000637038 ACYP1P07311 99 aa2.93□□□□□ -1.94
SCN1A-214ENST00000637038 HOXD3P31249 432 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-214ENST00000637038 DEFB131AP59861 70 aa2.93□□□□□ -1.94
SCN1A-214ENST00000637038 MRPS36P82909 103 aaKnown RBP2.93□□□□□ -1.94
SCN1A-214ENST00000637038 RPL36AP83881 106 aaKnown RBP2.93□□□□□ -1.94
SCN1A-214ENST00000637038 NTN5Q8WTR8 489 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-214ENST00000637038 RPL36ALQ969Q0 106 aaKnown RBP2.93□□□□□ -1.94
SCN1A-214ENST00000637038 ICOSQ9Y6W8 199 aa2.93□□□□□ -1.94
SCN1A-214ENST00000637038 IGHV4-30-2A0A087WSY4 118 aa2.93□□□□□ -1.94
SCN1A-214ENST00000637038 UBE2L6O14933 153 aa2.93□□□□□ -1.94
SCN1A-214ENST00000637038 DEFB112Q30KQ8 113 aa2.93□□□□□ -1.94
SCN1A-214ENST00000637038 MEIG1Q5JSS6 88 aa2.93□□□□□ -1.94
SCN1A-214ENST00000637038 KRTAP1-3Q8IUG1 177 aa2.93□□□□□ -1.94
SCN1A-214ENST00000637038 AVPP01185 164 aa2.93□□□□□ -1.94
SCN1A-214ENST00000637038 IGHV4-59P01825 116 aa2.93□□□□□ -1.94
SCN1A-214ENST00000637038 Q6ZS46 218 aa2.93□□□□□ -1.94
SCN1A-214ENST00000637038 MUC4Q99102 2169 aa2.92□□□□□ -1.94
SCN1A-214ENST00000637038 TSPEAR-AS2P59090 65 aa2.92□□□□□ -1.94
SCN1A-214ENST00000637038 AMELXQ99217 191 aa2.92□□□□□ -1.94
SCN1A-214ENST00000637038 LINC00467Q9BRT7 94 aa2.92□□□□□ -1.94
SCN1A-214ENST00000637038 C16orf95Q9H693 158 aa2.92□□□□□ -1.94
SCN1A-214ENST00000637038 DNAH1Q9P2D7 4330 aa2.92□□□□□ -1.94
SCN1A-214ENST00000637038 Q6Q795 121 aa2.92□□□□□ -1.94
SCN1A-214ENST00000637038 VSIG2Q96IQ7 327 aa2.92□□□□□ -1.94
SCN1A-214ENST00000637038 IGHV3-73A0A0B4J1V6 119 aa2.92□□□□□ -1.94
SCN1A-214ENST00000637038 KNCNA6PVL3 124 aa2.92□□□□□ -1.94
SCN1A-214ENST00000637038 CCDC179H3BU77 68 aa2.92□□□□□ -1.94
SCN1A-214ENST00000637038 MT-ATP8P03928 68 aa2.92□□□□□ -1.94
SCN1A-214ENST00000637038 FAM19A5Q7Z5A7 132 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-214ENST00000637038 STHQ8IWL8 128 aa2.92□□□□□ -1.94
SCN1A-214ENST00000637038 DEFB104AQ8WTQ1 72 aa2.92□□□□□ -1.94
SCN1A-214ENST00000637038 CDIP1Q9H305 208 aa2.92□□□□□ -1.94
SCN1A-214ENST00000637038 TRBV10-1A0A0K0K1A3 114 aa2.91□□□□□ -1.94
SCN1A-214ENST00000637038 NDUFA1O15239 70 aa2.91□□□□□ -1.94
SCN1A-214ENST00000637038 IGHV3-53P01767 116 aa2.91□□□□□ -1.94
SCN1A-214ENST00000637038 SMCPP49901 116 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-214ENST00000637038 BEAN1Q3B7T3 259 aa2.91□□□□□ -1.94
SCN1A-214ENST00000637038 CARD19Q96LW7 228 aa2.91□□□□□ -1.94
SCN1A-214ENST00000637038 NACAE9PAV3 2078 aa2.91□□□□□ -1.94
SCN1A-214ENST00000637038 A0A0U1RQV1 116 aa2.91□□□□□ -1.94
SCN1A-214ENST00000637038 FAM240AA0A1B0GVK7 77 aa2.91□□□□□ -1.94
SCN1A-214ENST00000637038 OXTP01178 125 aa2.91□□□□□ -1.94
SCN1A-214ENST00000637038 INAFM2P0DMQ5 153 aa2.91□□□□□ -1.94
SCN1A-214ENST00000637038 OPRPNQ99935 248 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-214ENST00000637038 JMJD1CQ15652 2540 aa2.91□□□□□ -1.94
SCN1A-214ENST00000637038 LOC107984640A0A0U1RRK4 108 aa2.91□□□□□ -1.94
SCN1A-214ENST00000637038 XGP55808 180 aa2.91□□□□□ -1.94
SCN1A-214ENST00000637038 DAZ2Q13117 558 aaKnown RBP2.91□□□□□ -1.94
SCN1A-214ENST00000637038 DAZ4Q86SG3 579 aaKnown RBP2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 105.3 ms