RNA–Protein interactions for RNA: ENST00000629293.1

LINC00550-201, long intergenic non-protein coding RNA 550, humanhuman

TSL 1 (best) BASIC

Gene LINC00550, Length 3,434 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00550-201ENST00000629293 LINC00315P59091 139 aa3.42□□□□□ -1.86
LINC00550-201ENST00000629293 KRTAP4-5Q9BYR2 181 aa3.42□□□□□ -1.86
LINC00550-201ENST00000629293 A0A087WX48 190 aa3.42□□□□□ -1.86
LINC00550-201ENST00000629293 TRAV12-1A0A0B4J245 112 aa3.42□□□□□ -1.86
LINC00550-201ENST00000629293 TRAV8-6A0A0B4J262 113 aa3.42□□□□□ -1.86
LINC00550-201ENST00000629293 PAX4O43316 350 aa3.42□□□□□ -1.86
LINC00550-201ENST00000629293 RNASE4P34096 147 aaKnown RBP3.42□□□□□ -1.86
LINC00550-201ENST00000629293 RPL32P62910 135 aaKnown RBP3.42□□□□□ -1.86
LINC00550-201ENST00000629293 LINC00336Q6ZUF6 198 aa3.42□□□□□ -1.86
LINC00550-201ENST00000629293 TOMM6Q96B49 74 aa3.42□□□□□ -1.86
LINC00550-201ENST00000629293 NACAE9PAV3 2078 aa3.42□□□□□ -1.86
LINC00550-201ENST00000629293 IGLV5-52A0A0A0MRZ9 124 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 C7orf71A4D174 169 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 H3BRM9 83 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 RTL8CO15255 209 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 GAGE7O76087 117 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 GAGE12FP0CL80 117 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 GAGE12GP0CL81 117 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 GAGE12IP0CL82 117 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 P0DMU3 169 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 FAM231AP0DMU4 169 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 FAM231CP0DMU5 169 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 GAGE4Q13068 117 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 AP1S3Q96PC3 154 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 DNAH11Q96DT5 4516 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 GNRH2O43555 120 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 PRSS1P07477 247 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 MIFP14174 115 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 NMUP48645 174 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 VAMP3Q15836 100 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 C12orf74Q32Q52 190 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 ORMDL2Q53FV1 153 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 LCE1DQ5T752 114 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 MAPKAPK5-AS1Q8N8E1 139 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 RPL39LQ96EH5 51 aaKnown RBP3.41□□□□□ -1.86
LINC00550-201ENST00000629293 MRPL35Q9NZE8 188 aaKnown RBP3.41□□□□□ -1.86
LINC00550-201ENST00000629293 PHLDA3Q9Y5J5 127 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 FAT2Q9NYQ8 4349 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 K7EQG2 157 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 GIG44P09565 113 aaPredicted RBP3.41□□□□□ -1.86
LINC00550-201ENST00000629293 S100A4P26447 101 aaKnown RBP3.41□□□□□ -1.86
LINC00550-201ENST00000629293 PLNP26678 52 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 ID1P41134 155 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 TCTAP57738 103 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 UFSP1Q6NVU6 142 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 ERASQ7Z444 233 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 C14orf178Q8N769 122 aaPredicted RBP3.41□□□□□ -1.86
LINC00550-201ENST00000629293 C9orf85Q96MD7 179 aa3.41□□□□□ -1.86
LINC00550-201ENST00000629293 A6NDN8 102 aa3.4□□□□□ -1.86
LINC00550-201ENST00000629293 F8VRH5 84 aa3.4□□□□□ -1.86
LINC00550-201ENST00000629293 PPP1R17O96001 155 aa3.4□□□□□ -1.86
LINC00550-201ENST00000629293 ZC2HC1BQ5TFG8 222 aa3.4□□□□□ -1.86
LINC00550-201ENST00000629293 AMMECR1LQ6DCA0 310 aa3.4□□□□□ -1.86
LINC00550-201ENST00000629293 TRPT1Q86TN4 253 aaKnown RBP3.4□□□□□ -1.86
LINC00550-201ENST00000629293 A0A0J9YX75 114 aa3.4□□□□□ -1.87
LINC00550-201ENST00000629293 C16orf90A8MZG2 172 aa3.4□□□□□ -1.87
LINC00550-201ENST00000629293 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.4□□□□□ -1.87
LINC00550-201ENST00000629293 RPL24P83731 157 aaKnown RBP3.4□□□□□ -1.87
LINC00550-201ENST00000629293 FAM159AQ6UWV7 190 aa3.4□□□□□ -1.87
LINC00550-201ENST00000629293 OR4C5Q8NGB2 326 aa3.4□□□□□ -1.87
LINC00550-201ENST00000629293 CHAC1Q9BUX1 264 aa3.4□□□□□ -1.87
LINC00550-201ENST00000629293 TTTY13Q9BZ97 58 aa3.4□□□□□ -1.87
LINC00550-201ENST00000629293 TRBV25-1A0A075B6N4 114 aa3.4□□□□□ -1.87
LINC00550-201ENST00000629293 IGHV3-16A0A0C4DH30 117 aa3.4□□□□□ -1.87
LINC00550-201ENST00000629293 H7C1H1 209 aa3.4□□□□□ -1.87
LINC00550-201ENST00000629293 SNRPD3P62318 126 aaKnown RBP3.4□□□□□ -1.87
LINC00550-201ENST00000629293 RBX1P62877 108 aa3.4□□□□□ -1.87
LINC00550-201ENST00000629293 TRBV6-5A0A0K0K1A5 114 aa3.39□□□□□ -1.87
LINC00550-201ENST00000629293 MGPP08493 103 aa3.39□□□□□ -1.87
LINC00550-201ENST00000629293 SPART-AS1P0CW21 52 aa3.39□□□□□ -1.87
LINC00550-201ENST00000629293 HTN1P15515 57 aa3.39□□□□□ -1.87
LINC00550-201ENST00000629293 POLR2KP53803 58 aaKnown RBP3.39□□□□□ -1.87
LINC00550-201ENST00000629293 FXYD2P54710 66 aa3.39□□□□□ -1.87
LINC00550-201ENST00000629293 C1orf134Q5TEV5 83 aa3.39□□□□□ -1.87
LINC00550-201ENST00000629293 FAM222AQ5U5X8 452 aa3.39□□□□□ -1.87
LINC00550-201ENST00000629293 PRR26Q8N8Z3 221 aa3.39□□□□□ -1.87
LINC00550-201ENST00000629293 BAALCQ8WXS3 180 aa3.39□□□□□ -1.87
LINC00550-201ENST00000629293 HERC1Q15751 4861 aa3.39□□□□□ -1.87
LINC00550-201ENST00000629293 A0A1B0GVY2 172 aa3.39□□□□□ -1.87
LINC00550-201ENST00000629293 A8MTW9 85 aa3.39□□□□□ -1.87
LINC00550-201ENST00000629293 DEFB130BP0DP73 79 aa3.39□□□□□ -1.87
LINC00550-201ENST00000629293 DEFB130AP0DP74 79 aa3.39□□□□□ -1.87
LINC00550-201ENST00000629293 TAL2Q16559 108 aa3.39□□□□□ -1.87
LINC00550-201ENST00000629293 MORN3Q6PF18 240 aaPredicted RBP3.39□□□□□ -1.87
LINC00550-201ENST00000629293 AMTNQ6UX39 209 aa3.39□□□□□ -1.87
LINC00550-201ENST00000629293 C2orf66Q6UXQ4 117 aa3.39□□□□□ -1.87
LINC00550-201ENST00000629293 SCGB3A1Q96QR1 104 aa3.39□□□□□ -1.87
LINC00550-201ENST00000629293 K7EP34 96 aa3.38□□□□□ -1.87
LINC00550-201ENST00000629293 TSHBP01222 138 aa3.38□□□□□ -1.87
LINC00550-201ENST00000629293 C1QTNF4Q9BXJ3 329 aa3.38□□□□□ -1.87
LINC00550-201ENST00000629293 CHTOPQ9Y3Y2 248 aaKnown RBP3.38□□□□□ -1.87
LINC00550-201ENST00000629293 DYNC1H1Q14204 4646 aaKnown RBP3.38□□□□□ -1.87
LINC00550-201ENST00000629293 TRAV12-3A0A0B4J271 114 aa3.38□□□□□ -1.87
LINC00550-201ENST00000629293 TRBV27A0A0K0K1C4 114 aa3.38□□□□□ -1.87
LINC00550-201ENST00000629293 LINC01549A6NIU2 74 aa3.38□□□□□ -1.87
LINC00550-201ENST00000629293 IGIPA6NJ69 53 aa3.38□□□□□ -1.87
LINC00550-201ENST00000629293 PRM2P04554 102 aa3.38□□□□□ -1.87
LINC00550-201ENST00000629293 CRYGDP07320 174 aa3.38□□□□□ -1.87
LINC00550-201ENST00000629293 DAD1P61803 113 aa3.38□□□□□ -1.87
LINC00550-201ENST00000629293 CEND1Q8N111 149 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms