RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 VPS25Q9BRG1 176 aa8.36□□□□□ -1.07
VRK3-223ENST00000601341 VCX2Q9H322 139 aa8.36□□□□□ -1.07
VRK3-223ENST00000601341 SPANXA1Q9NS26 97 aa8.36□□□□□ -1.07
VRK3-223ENST00000601341 X6R8D5 127 aa8.36□□□□□ -1.07
VRK3-223ENST00000601341 PCP4P48539 62 aa8.35□□□□□ -1.07
VRK3-223ENST00000601341 RNF183Q96D59 192 aa8.35□□□□□ -1.07
VRK3-223ENST00000601341 TNFRSF18Q9Y5U5 241 aa8.35□□□□□ -1.07
VRK3-223ENST00000601341 PLAC8L1A1L4L8 177 aa8.35□□□□□ -1.07
VRK3-223ENST00000601341 IGHV3-53P01767 116 aa8.35□□□□□ -1.07
VRK3-223ENST00000601341 LGALS3P17931 250 aaKnown RBP8.35□□□□□ -1.07
VRK3-223ENST00000601341 MRPS36P82909 103 aaKnown RBP8.35□□□□□ -1.07
VRK3-223ENST00000601341 TRGV1A0A0A0MS02 117 aa8.34□□□□□ -1.07
VRK3-223ENST00000601341 PRB2P02812 416 aaPredicted RBP8.34□□□□□ -1.07
VRK3-223ENST00000601341 RNF151Q2KHN1 245 aa8.34□□□□□ -1.07
VRK3-223ENST00000601341 CFAP126Q5VTH2 177 aa8.34□□□□□ -1.07
VRK3-223ENST00000601341 OVOL2Q9BRP0 275 aa8.34□□□□□ -1.07
VRK3-223ENST00000601341 NOP10Q9NPE3 64 aaKnown RBP8.34□□□□□ -1.07
VRK3-223ENST00000601341 MRPL16Q9NX20 251 aaKnown RBP8.34□□□□□ -1.07
VRK3-223ENST00000601341 DNAH3Q8TD57 4116 aa8.33□□□□□ -1.08
VRK3-223ENST00000601341 IGHV3-30P01768 117 aa8.33□□□□□ -1.08
VRK3-223ENST00000601341 IGHV3-30-5P0DP03 117 aa8.33□□□□□ -1.08
VRK3-223ENST00000601341 ZNF22P17026 224 aaPredicted RBP8.33□□□□□ -1.08
VRK3-223ENST00000601341 J3QR89 54 aa8.33□□□□□ -1.08
VRK3-223ENST00000601341 K7EIL1 84 aa8.33□□□□□ -1.08
VRK3-223ENST00000601341 RS1O15537 224 aa8.33□□□□□ -1.08
VRK3-223ENST00000601341 MIFP14174 115 aa8.33□□□□□ -1.08
VRK3-223ENST00000601341 EMP1P54849 157 aa8.33□□□□□ -1.08
VRK3-223ENST00000601341 NBEAL2Q6ZNJ1 2754 aa8.32□□□□□ -1.08
VRK3-223ENST00000601341 TSPEAR-AS2P59090 65 aa8.32□□□□□ -1.08
VRK3-223ENST00000601341 UBE2D3P61077 147 aa8.32□□□□□ -1.08
VRK3-223ENST00000601341 UBE2D2P62837 147 aa8.32□□□□□ -1.08
VRK3-223ENST00000601341 DEFB121Q5J5C9 76 aa8.32□□□□□ -1.08
VRK3-223ENST00000601341 Q6ZTI0 123 aa8.32□□□□□ -1.08
VRK3-223ENST00000601341 TIMM21Q9BVV7 248 aa8.32□□□□□ -1.08
VRK3-223ENST00000601341 PGPEP1Q9NXJ5 209 aa8.32□□□□□ -1.08
VRK3-223ENST00000601341 FBN3Q75N90 2809 aa8.31□□□□□ -1.08
VRK3-223ENST00000601341 TRBV20-1A0A075B6N2 111 aa8.31□□□□□ -1.08
VRK3-223ENST00000601341 TINCRA0A1B0GVN0 87 aa8.31□□□□□ -1.08
VRK3-223ENST00000601341 GAGE13Q4V321 117 aa8.31□□□□□ -1.08
VRK3-223ENST00000601341 NACAE9PAV3 2078 aa8.31□□□□□ -1.08
VRK3-223ENST00000601341 IGHV4-28A0A0C4DH34 117 aa8.3□□□□□ -1.08
VRK3-223ENST00000601341 TMEM238C9JI98 176 aa8.3□□□□□ -1.08
VRK3-223ENST00000601341 RPL24P83731 157 aaKnown RBP8.3□□□□□ -1.08
VRK3-223ENST00000601341 TRGV2A0A075B6R0 118 aa8.3□□□□□ -1.08
VRK3-223ENST00000601341 TRBV10-1A0A0K0K1A3 114 aa8.3□□□□□ -1.08
VRK3-223ENST00000601341 H3BMG7 143 aa8.3□□□□□ -1.08
VRK3-223ENST00000601341 C10orf126Q8N4M7 172 aa8.3□□□□□ -1.08
VRK3-223ENST00000601341 Q8NAQ8 132 aa8.3□□□□□ -1.08
VRK3-223ENST00000601341 ATP6V0E2Q8NHE4 81 aa8.3□□□□□ -1.08
VRK3-223ENST00000601341 FAM104AQ969W3 186 aa8.3□□□□□ -1.08
VRK3-223ENST00000601341 CHCHD7Q9BUK0 85 aa8.3□□□□□ -1.08
VRK3-223ENST00000601341 PRO0461Q9UI25 63 aa8.3□□□□□ -1.08
VRK3-223ENST00000601341 UBE2D4Q9Y2X8 147 aa8.3□□□□□ -1.08
VRK3-223ENST00000601341 TRAV4A0A0B4J268 109 aa8.29□□□□□ -1.08
VRK3-223ENST00000601341 A0A0B4J2C4 111 aa8.29□□□□□ -1.08
VRK3-223ENST00000601341 A0A0J9YXV3 536 aa8.29□□□□□ -1.08
VRK3-223ENST00000601341 LYRM9A8MSI8 78 aa8.29□□□□□ -1.08
VRK3-223ENST00000601341 CIDEAO60543 219 aa8.29□□□□□ -1.08
VRK3-223ENST00000601341 GAGE7O76087 117 aa8.29□□□□□ -1.08
VRK3-223ENST00000601341 TSPAN13O95857 204 aa8.29□□□□□ -1.08
VRK3-223ENST00000601341 GAGE12FP0CL80 117 aa8.29□□□□□ -1.08
VRK3-223ENST00000601341 GAGE12GP0CL81 117 aa8.29□□□□□ -1.08
VRK3-223ENST00000601341 GAGE12IP0CL82 117 aa8.29□□□□□ -1.08
VRK3-223ENST00000601341 COTL1Q14019 142 aa8.29□□□□□ -1.08
VRK3-223ENST00000601341 OPRPNQ99935 248 aaPredicted RBP8.29□□□□□ -1.08
VRK3-223ENST00000601341 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.28□□□□□ -1.08
VRK3-223ENST00000601341 IGHV3-73A0A0B4J1V6 119 aa8.28□□□□□ -1.08
VRK3-223ENST00000601341 CFC1BP0CG36 223 aa8.28□□□□□ -1.08
VRK3-223ENST00000601341 CFC1P0CG37 223 aa8.28□□□□□ -1.08
VRK3-223ENST00000601341 SMAGPQ0VAQ4 97 aa8.28□□□□□ -1.08
VRK3-223ENST00000601341 SBSPONQ8IVN8 264 aa8.28□□□□□ -1.08
VRK3-223ENST00000601341 PRO1854Q9UHT4 67 aa8.28□□□□□ -1.08
VRK3-223ENST00000601341 CSDC2Q9Y534 153 aaKnown RBP8.28□□□□□ -1.08
VRK3-223ENST00000601341 IGHV1-58A0A0C4DH39 117 aa8.27□□□□□ -1.08
VRK3-223ENST00000601341 TEX48A0A1B0GUV7 120 aa8.27□□□□□ -1.08
VRK3-223ENST00000601341 DEFB4AO15263 64 aa8.27□□□□□ -1.08
VRK3-223ENST00000601341 TIRAPP58753 221 aa8.27□□□□□ -1.08
VRK3-223ENST00000601341 LINC00612Q8N6U2 182 aa8.27□□□□□ -1.08
VRK3-223ENST00000601341 IGLV5-45A0A087WSX0 123 aa8.27□□□□□ -1.09
VRK3-223ENST00000601341 IGHV3-30-3P0DP02 117 aa8.27□□□□□ -1.09
VRK3-223ENST00000601341 DEFB130BP0DP73 79 aa8.27□□□□□ -1.09
VRK3-223ENST00000601341 DEFB130AP0DP74 79 aa8.27□□□□□ -1.09
VRK3-223ENST00000601341 FAM222AQ5U5X8 452 aa8.27□□□□□ -1.09
VRK3-223ENST00000601341 FAM19A3Q7Z5A8 133 aa8.27□□□□□ -1.09
VRK3-223ENST00000601341 SPATA25Q9BR10 227 aa8.27□□□□□ -1.09
VRK3-223ENST00000601341 RETNQ9HD89 108 aa8.27□□□□□ -1.09
VRK3-223ENST00000601341 M0QXV9 152 aa8.26□□□□□ -1.09
VRK3-223ENST00000601341 TIMM17BO60830 172 aa8.26□□□□□ -1.09
VRK3-223ENST00000601341 WFDC2Q14508 124 aa8.26□□□□□ -1.09
VRK3-223ENST00000601341 Q6ZSN1 163 aa8.26□□□□□ -1.09
VRK3-223ENST00000601341 MRAPQ8TCY5 172 aa8.26□□□□□ -1.09
VRK3-223ENST00000601341 SPANXDQ9BXN6 97 aa8.26□□□□□ -1.09
VRK3-223ENST00000601341 SPANXCQ9NY87 97 aa8.26□□□□□ -1.09
VRK3-223ENST00000601341 A0A0J9YXY3 114 aa8.25□□□□□ -1.09
VRK3-223ENST00000601341 APOMO95445 188 aa8.25□□□□□ -1.09
VRK3-223ENST00000601341 SPART-AS1P0CW21 52 aa8.25□□□□□ -1.09
VRK3-223ENST00000601341 DAZ4Q86SG3 579 aaKnown RBP8.25□□□□□ -1.09
VRK3-223ENST00000601341 DEFB104AQ8WTQ1 72 aa8.25□□□□□ -1.09
VRK3-223ENST00000601341 VSIG2Q96IQ7 327 aa8.25□□□□□ -1.09
VRK3-223ENST00000601341 TM2D3Q9BRN9 247 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms