RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 CLRN3Q8NCR9 226 aa8.58□□□□□ -1.04
CLK3-224ENST00000568605 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.57□□□□□ -1.04
CLK3-224ENST00000568605 IGKV3OR2-268A0A0C4DH90 116 aa8.57□□□□□ -1.04
CLK3-224ENST00000568605 SNAPINO95295 136 aa8.57□□□□□ -1.04
CLK3-224ENST00000568605 SVBPQ8N300 66 aa8.57□□□□□ -1.04
CLK3-224ENST00000568605 RPS10P5Q9NQ39 176 aa8.57□□□□□ -1.04
CLK3-224ENST00000568605 KIAA1109Q2LD37 5005 aa8.56□□□□□ -1.04
CLK3-224ENST00000568605 USP17L23D6RBM5 183 aa8.56□□□□□ -1.04
CLK3-224ENST00000568605 APOC3P02656 99 aa8.56□□□□□ -1.04
CLK3-224ENST00000568605 RAB5AP20339 215 aa8.56□□□□□ -1.04
CLK3-224ENST00000568605 CSDC2Q9Y534 153 aaKnown RBP8.56□□□□□ -1.04
CLK3-224ENST00000568605 LRP1BQ9NZR2 4599 aa8.56□□□□□ -1.04
CLK3-224ENST00000568605 MT-ND6P03923 174 aa8.55□□□□□ -1.04
CLK3-224ENST00000568605 FUSP35637 526 aaKnown RBP eCLIP8.55□□□□□ -1.04
CLK3-224ENST00000568605 TIMM21Q9BVV7 248 aa8.55□□□□□ -1.04
CLK3-224ENST00000568605 SS18Q15532 418 aa8.54□□□□□ -1.04
CLK3-224ENST00000568605 ZNF664Q8N3J9 261 aa8.54□□□□□ -1.04
CLK3-224ENST00000568605 UBE2D4Q9Y2X8 147 aa8.54□□□□□ -1.04
CLK3-224ENST00000568605 PRSS47A8MTI9 375 aa8.53□□□□□ -1.04
CLK3-224ENST00000568605 K7EMI3 77 aa8.53□□□□□ -1.04
CLK3-224ENST00000568605 CFAP161Q6P656 301 aa8.53□□□□□ -1.04
CLK3-224ENST00000568605 KRTAP26-1Q6PEX3 210 aa8.53□□□□□ -1.04
CLK3-224ENST00000568605 CHCHD10Q8WYQ3 142 aaPredicted RBP8.53□□□□□ -1.04
CLK3-224ENST00000568605 GNB1LQ9BYB4 327 aa8.53□□□□□ -1.04
CLK3-224ENST00000568605 CDC42SE2Q9NRR3 84 aa8.53□□□□□ -1.04
CLK3-224ENST00000568605 SPANXA1Q9NS26 97 aa8.53□□□□□ -1.04
CLK3-224ENST00000568605 LOC389332A0A1B0GUA5 103 aa8.52□□□□□ -1.05
CLK3-224ENST00000568605 GAGE12HA6NDE8 117 aa8.52□□□□□ -1.05
CLK3-224ENST00000568605 CCL25O15444 150 aa8.52□□□□□ -1.05
CLK3-224ENST00000568605 IFI27P40305 119 aaPredicted RBP8.52□□□□□ -1.05
CLK3-224ENST00000568605 KRTAP10-1P60331 282 aa8.52□□□□□ -1.05
CLK3-224ENST00000568605 Q8N8P6 123 aa8.52□□□□□ -1.05
CLK3-224ENST00000568605 NXT2Q9NPJ8 142 aaKnown RBP8.52□□□□□ -1.05
CLK3-224ENST00000568605 AP5S1Q9NUS5 200 aa8.52□□□□□ -1.05
CLK3-224ENST00000568605 LINC00959A0A1B0GUT2 108 aa8.51□□□□□ -1.05
CLK3-224ENST00000568605 ORMDL2Q53FV1 153 aa8.51□□□□□ -1.05
CLK3-224ENST00000568605 APOBP04114 4563 aaKnown RBP8.51□□□□□ -1.05
CLK3-224ENST00000568605 hDV102S1A0JD36 115 aa8.5□□□□□ -1.05
CLK3-224ENST00000568605 C1orf196B1AJZ1 125 aa8.5□□□□□ -1.05
CLK3-224ENST00000568605 G0S2P27469 103 aa8.5□□□□□ -1.05
CLK3-224ENST00000568605 XCL1P47992 114 aa8.5□□□□□ -1.05
CLK3-224ENST00000568605 RPL39P62891 51 aaKnown RBP8.5□□□□□ -1.05
CLK3-224ENST00000568605 Q6ZUT4 128 aa8.5□□□□□ -1.05
CLK3-224ENST00000568605 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.49□□□□□ -1.05
CLK3-224ENST00000568605 PRSS1P07477 247 aa8.49□□□□□ -1.05
CLK3-224ENST00000568605 MRPS36P82909 103 aaKnown RBP8.49□□□□□ -1.05
CLK3-224ENST00000568605 CYSLTR1Q9Y271 337 aa8.49□□□□□ -1.05
CLK3-224ENST00000568605 HERC2O95714 4834 aa8.49□□□□□ -1.05
CLK3-224ENST00000568605 KIAA1644Q3SXP7 199 aa8.48□□□□□ -1.05
CLK3-224ENST00000568605 CD164L2Q6UWJ8 174 aa8.48□□□□□ -1.05
CLK3-224ENST00000568605 MRPL18Q9H0U6 180 aaKnown RBP8.48□□□□□ -1.05
CLK3-224ENST00000568605 HSPG2P98160 4391 aa8.47□□□□□ -1.05
CLK3-224ENST00000568605 CNBPP62633 177 aaKnown RBP8.47□□□□□ -1.05
CLK3-224ENST00000568605 FABP9Q0Z7S8 132 aa8.47□□□□□ -1.05
CLK3-224ENST00000568605 FOXI1Q12951 378 aa8.47□□□□□ -1.05
CLK3-224ENST00000568605 RNASE13Q5GAN3 156 aaKnown RBP8.47□□□□□ -1.05
CLK3-224ENST00000568605 Q6ZN92 141 aa8.47□□□□□ -1.05
CLK3-224ENST00000568605 PYGO1Q9Y3Y4 419 aa8.47□□□□□ -1.05
CLK3-224ENST00000568605 RYR1P21817 5038 aa8.46□□□□□ -1.05
CLK3-224ENST00000568605 TRAV13-1A0A0B4J241 112 aa8.46□□□□□ -1.06
CLK3-224ENST00000568605 IGHV1-58A0A0C4DH39 117 aa8.46□□□□□ -1.06
CLK3-224ENST00000568605 IFITM10A6NMD0 228 aa8.46□□□□□ -1.06
CLK3-224ENST00000568605 C2orf66Q6UXQ4 117 aa8.46□□□□□ -1.06
CLK3-224ENST00000568605 C15orf56Q8N910 161 aa8.46□□□□□ -1.06
CLK3-224ENST00000568605 PRSS3P2Q8NHM4 247 aa8.46□□□□□ -1.06
CLK3-224ENST00000568605 C2orf88Q9BSF0 95 aa8.46□□□□□ -1.06
CLK3-224ENST00000568605 GVQW2A0A096LPI5 108 aaPredicted RBP8.45□□□□□ -1.06
CLK3-224ENST00000568605 TGIF2-C20orf24A0A0A6YYL0 155 aa8.45□□□□□ -1.06
CLK3-224ENST00000568605 LINC01549A6NIU2 74 aa8.45□□□□□ -1.06
CLK3-224ENST00000568605 NPSP0C0P6 89 aa8.45□□□□□ -1.06
CLK3-224ENST00000568605 MALP21145 153 aa8.45□□□□□ -1.06
CLK3-224ENST00000568605 PAPPA-AS1Q5QFB9 102 aa8.45□□□□□ -1.06
CLK3-224ENST00000568605 C9orf163Q8N9P6 203 aa8.45□□□□□ -1.06
CLK3-224ENST00000568605 TMEM141Q96I45 108 aa8.45□□□□□ -1.06
CLK3-224ENST00000568605 ALKBH7Q9BT30 221 aaPredicted RBP8.45□□□□□ -1.06
CLK3-224ENST00000568605 SMCO4Q9NRQ5 59 aa8.45□□□□□ -1.06
CLK3-224ENST00000568605 TRAPPC1Q9Y5R8 145 aa8.45□□□□□ -1.06
CLK3-224ENST00000568605 COX7A2LO14548 114 aa8.44□□□□□ -1.06
CLK3-224ENST00000568605 APOMO95445 188 aa8.44□□□□□ -1.06
CLK3-224ENST00000568605 LINC01620Q4KN68 170 aa8.44□□□□□ -1.06
CLK3-224ENST00000568605 HIGD2BQ4VC39 106 aa8.44□□□□□ -1.06
CLK3-224ENST00000568605 TEX43Q6ZNM6 134 aa8.44□□□□□ -1.06
CLK3-224ENST00000568605 Q6ZSA8 131 aa8.44□□□□□ -1.06
CLK3-224ENST00000568605 Q8N1X5 172 aa8.44□□□□□ -1.06
CLK3-224ENST00000568605 PKIGQ9Y2B9 76 aa8.44□□□□□ -1.06
CLK3-224ENST00000568605 IGLV4-3A0A075B6K6 122 aa8.43□□□□□ -1.06
CLK3-224ENST00000568605 ZNF561-AS1K7EIQ3 104 aa8.43□□□□□ -1.06
CLK3-224ENST00000568605 XGP55808 180 aa8.43□□□□□ -1.06
CLK3-224ENST00000568605 FA2HQ7L5A8 372 aa8.43□□□□□ -1.06
CLK3-224ENST00000568605 IGHV3-64A0A075B6Q5 118 aa8.42□□□□□ -1.06
CLK3-224ENST00000568605 OPRPNQ99935 248 aaPredicted RBP8.42□□□□□ -1.06
CLK3-224ENST00000568605 DNAH8Q96JB1 4490 aa8.41□□□□□ -1.06
CLK3-224ENST00000568605 TIMM17AQ99595 171 aa8.41□□□□□ -1.06
CLK3-224ENST00000568605 SLC7A5P1Q8MH63 180 aa8.4□□□□□ -1.06
CLK3-224ENST00000568605 TOMM6Q96B49 74 aa8.4□□□□□ -1.06
CLK3-224ENST00000568605 VCX2Q9H322 139 aa8.4□□□□□ -1.06
CLK3-224ENST00000568605 FAM30AQ9NZY2 134 aa8.4□□□□□ -1.06
CLK3-224ENST00000568605 LINC01546A6NGU7 62 aa8.39□□□□□ -1.07
CLK3-224ENST00000568605 EPM2AB3EWF7 344 aa8.39□□□□□ -1.07
CLK3-224ENST00000568605 HAMPP81172 84 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 165.7 ms