RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 TRAV13-1A0A0B4J241 112 aa2.06□□□□□ -2.08
SLIRP-208ENST00000556956 TRAV25A0A0B4J276 109 aa2.06□□□□□ -2.08
SLIRP-208ENST00000556956 hADV29S1A0JD25 119 aa2.06□□□□□ -2.08
SLIRP-208ENST00000556956 RBMY1BA6NDE4 496 aaKnown RBP2.06□□□□□ -2.08
SLIRP-208ENST00000556956 RBMY1EA6NEQ0 496 aaKnown RBP2.06□□□□□ -2.08
SLIRP-208ENST00000556956 BCE1O60756 84 aa2.06□□□□□ -2.08
SLIRP-208ENST00000556956 NDUFC2O95298 119 aa2.06□□□□□ -2.08
SLIRP-208ENST00000556956 DNAL4O96015 105 aa2.06□□□□□ -2.08
SLIRP-208ENST00000556956 TRBV12-3P01733 135 aa2.06□□□□□ -2.08
SLIRP-208ENST00000556956 IGHG2P01859 326 aa2.06□□□□□ -2.08
SLIRP-208ENST00000556956 RBMY1DP0C7P1 496 aaKnown RBP2.06□□□□□ -2.08
SLIRP-208ENST00000556956 RBMY1A1P0DJD3 496 aaKnown RBP2.06□□□□□ -2.08
SLIRP-208ENST00000556956 RBMY1CP0DJD4 496 aa2.06□□□□□ -2.08
SLIRP-208ENST00000556956 RPL28P46779 137 aaKnown RBP2.06□□□□□ -2.08
SLIRP-208ENST00000556956 ATP5J2P56134 94 aa2.06□□□□□ -2.08
SLIRP-208ENST00000556956 SYNJ2BPP57105 145 aa2.06□□□□□ -2.08
SLIRP-208ENST00000556956 DEFB1P60022 68 aa2.06□□□□□ -2.08
SLIRP-208ENST00000556956 FAM19A3Q7Z5A8 133 aa2.06□□□□□ -2.08
SLIRP-208ENST00000556956 DPH3Q96FX2 82 aa2.06□□□□□ -2.08
SLIRP-208ENST00000556956 CHCHD7Q9BUK0 85 aa2.06□□□□□ -2.08
SLIRP-208ENST00000556956 Q9H8V8 135 aa2.06□□□□□ -2.08
SLIRP-208ENST00000556956 VCANP13611 3396 aa2.06□□□□□ -2.08
SLIRP-208ENST00000556956 RAI1Q7Z5J4 1906 aaPredicted RBP2.05□□□□□ -2.08
SLIRP-208ENST00000556956 DYSFO75923 2080 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 PCNX2A6NKB5 2137 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 CACNA1DQ01668 2161 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 MED13Q9UHV7 2174 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.05□□□□□ -2.08
SLIRP-208ENST00000556956 TRAV12-2A0A075B6T6 113 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 IGHV3OR16-10A0A075B7F0 116 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 A0A087WYN8 130 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 IGHV3-73A0A0B4J1V6 119 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 IGKV2-29A2NJV5 120 aaPredicted RBP2.05□□□□□ -2.08
SLIRP-208ENST00000556956 TMEM89A2RUT3 159 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 A6NDX4 124 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 K7EQG2 157 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 CCL21O00585 134 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 LY6HO94772 140 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 IGHV3-11P01762 117 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 CRPP02741 224 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 SPINK13Q1W4C9 94 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 RNASE13Q5GAN3 156 aaKnown RBP2.05□□□□□ -2.08
SLIRP-208ENST00000556956 LCE1FQ5T754 118 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 SERTAD4-AS1Q5TG53 156 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 ATP5EP2Q5VTU8 51 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 MRAPQ8TCY5 172 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 FAM104AQ969W3 186 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 OBSCN-AS1Q96MR7 158 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 LINC00467Q9BRT7 94 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 CDKN2A-AS1Q9UH64 79 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 KLK5Q9Y337 293 aaPredicted RBP2.05□□□□□ -2.08
SLIRP-208ENST00000556956 WDR87Q6ZQQ6 2873 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 MUC3AQ02505 3323 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 PRR14LQ5THK1 2151 aa2.05□□□□□ -2.08
SLIRP-208ENST00000556956 WDFY3Q8IZQ1 3526 aa2.04□□□□□ -2.08
SLIRP-208ENST00000556956 IGKV3D-7A0A0C4DH55 119 aa2.04□□□□□ -2.08
SLIRP-208ENST00000556956 TRBV10-3A0A0K0K1G6 114 aa2.04□□□□□ -2.08
SLIRP-208ENST00000556956 A8MZ25 164 aa2.04□□□□□ -2.08
SLIRP-208ENST00000556956 USP17L23D6RBM5 183 aa2.04□□□□□ -2.08
SLIRP-208ENST00000556956 JMJD7-PLA2G4BH0Y9G9 81 aa2.04□□□□□ -2.08
SLIRP-208ENST00000556956 RS1O15537 224 aa2.04□□□□□ -2.08
SLIRP-208ENST00000556956 CACNA1GO43497 2377 aa2.04□□□□□ -2.08
SLIRP-208ENST00000556956 DSCAMO60469 2012 aa2.04□□□□□ -2.08
SLIRP-208ENST00000556956 IGHV3-53P01767 116 aa2.04□□□□□ -2.08
SLIRP-208ENST00000556956 CCKP06307 115 aa2.04□□□□□ -2.08
SLIRP-208ENST00000556956 SEC61BP60468 96 aaKnown RBP2.04□□□□□ -2.08
SLIRP-208ENST00000556956 LMO4P61968 165 aa2.04□□□□□ -2.08
SLIRP-208ENST00000556956 COX6A2Q02221 97 aa2.04□□□□□ -2.08
SLIRP-208ENST00000556956 RBMY1FQ15415 496 aaKnown RBP2.04□□□□□ -2.08
SLIRP-208ENST00000556956 OTOGLQ3ZCN5 2332 aa2.04□□□□□ -2.08
SLIRP-208ENST00000556956 LINC00242Q5T6M2 205 aa2.04□□□□□ -2.08
SLIRP-208ENST00000556956 ZNF625Q96I27 306 aaPredicted RBP2.04□□□□□ -2.08
SLIRP-208ENST00000556956 UPK3BQ9BT76 320 aa2.04□□□□□ -2.08
SLIRP-208ENST00000556956 Q9HAA7 133 aa2.04□□□□□ -2.08
SLIRP-208ENST00000556956 ORMDL1Q9P0S3 153 aa2.04□□□□□ -2.08
SLIRP-208ENST00000556956 C22orf24Q9Y442 160 aa2.04□□□□□ -2.08
SLIRP-208ENST00000556956 IGHV3OR16-12A0A075B7B8 117 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 IGHV3-38A0A0C4DH36 116 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 TRBV10-1A0A0K0K1A3 114 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 A0A0U1RRA0 63 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 A8MTW9 85 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 IBA57-AS1B1ANH7 110 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 SMIM1B2RUZ4 78 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 F5H768 121 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 H3BQ85 93 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 UBE2L6O14933 153 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 HTN1P15515 57 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 PSMB8P28062 276 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 LINC00158P58513 81 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 LY6EQ16553 131 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 KRTAP24-1Q3LI83 254 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 SOSTDC1Q6X4U4 206 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 Q8N2B8 174 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 SMIM11BQ8TCY0 68 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 COX7B2Q8TF08 81 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 FAM218AQ96MZ4 157 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 SND1-IT1Q9HBX3 110 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 CDC42SE2Q9NRR3 84 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 LINC00846Q9NV44 126 aa2.03□□□□□ -2.08
SLIRP-208ENST00000556956 SERP1Q9Y6X1 66 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms