RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 PCNX2A6NKB5 2137 aa12.99□□□□□ -0.33
SYNE3-204ENST00000555759 CRIP2P52943 208 aaPredicted RBP12.99□□□□□ -0.33
SYNE3-204ENST00000555759 COX8CQ7Z4L0 72 aa12.99□□□□□ -0.33
SYNE3-204ENST00000555759 CHCHD10Q8WYQ3 142 aaPredicted RBP12.99□□□□□ -0.33
SYNE3-204ENST00000555759 CDIP1Q9H305 208 aa12.99□□□□□ -0.33
SYNE3-204ENST00000555759 H0Y9J4 135 aa12.98□□□□□ -0.33
SYNE3-204ENST00000555759 MIFP14174 115 aa12.98□□□□□ -0.33
SYNE3-204ENST00000555759 PRR9Q5T870 116 aa12.98□□□□□ -0.33
SYNE3-204ENST00000555759 IGLV4-69A0A075B6H9 119 aa12.98□□□□□ -0.33
SYNE3-204ENST00000555759 LINC00269Q8N2A0 174 aa12.98□□□□□ -0.33
SYNE3-204ENST00000555759 PSMG3-AS1Q96PY0 264 aa12.98□□□□□ -0.33
SYNE3-204ENST00000555759 TRBV6-4A0A1B0GX49 114 aa12.98□□□□□ -0.33
SYNE3-204ENST00000555759 POM121L12Q8N7R1 296 aa12.98□□□□□ -0.33
SYNE3-204ENST00000555759 CRYGDP07320 174 aa12.97□□□□□ -0.33
SYNE3-204ENST00000555759 CSDC2Q9Y534 153 aaKnown RBP12.97□□□□□ -0.33
SYNE3-204ENST00000555759 NBASA2RRP1 2371 aa12.97□□□□□ -0.33
SYNE3-204ENST00000555759 NUP210LQ5VU65 1888 aa12.97□□□□□ -0.33
SYNE3-204ENST00000555759 TRBV6-8A0A0A6YYG3 113 aa12.97□□□□□ -0.33
SYNE3-204ENST00000555759 TNFRSF13BO14836 293 aaPredicted RBP12.96□□□□□ -0.33
SYNE3-204ENST00000555759 UBE2AP49459 152 aa12.96□□□□□ -0.33
SYNE3-204ENST00000555759 NRGNQ92686 78 aa12.96□□□□□ -0.34
SYNE3-204ENST00000555759 ATG2AQ2TAZ0 1938 aa12.96□□□□□ -0.34
SYNE3-204ENST00000555759 CCL18P55774 89 aa12.95□□□□□ -0.34
SYNE3-204ENST00000555759 ESM1Q9NQ30 184 aa12.95□□□□□ -0.34
SYNE3-204ENST00000555759 SEC61GP60059 68 aa12.95□□□□□ -0.34
SYNE3-204ENST00000555759 MUC7Q8TAX7 377 aa12.95□□□□□ -0.34
SYNE3-204ENST00000555759 TRBV7-7A0A0K0K1E9 115 aa12.95□□□□□ -0.34
SYNE3-204ENST00000555759 RPL28P46779 137 aaKnown RBP12.95□□□□□ -0.34
SYNE3-204ENST00000555759 A0A1W2PNU3 283 aaPredicted RBP12.94□□□□□ -0.34
SYNE3-204ENST00000555759 ADORA2A-AS1P86434 159 aa12.94□□□□□ -0.34
SYNE3-204ENST00000555759 KIAA1549Q9HCM3 1950 aa12.94□□□□□ -0.34
SYNE3-204ENST00000555759 Q6ZQY7 126 aa12.94□□□□□ -0.34
SYNE3-204ENST00000555759 Q8N6K4 173 aa12.93□□□□□ -0.34
SYNE3-204ENST00000555759 LMO4P61968 165 aa12.93□□□□□ -0.34
SYNE3-204ENST00000555759 PLXNB1O43157 2135 aa12.93□□□□□ -0.34
SYNE3-204ENST00000555759 PROK1P58294 105 aa12.92□□□□□ -0.34
SYNE3-204ENST00000555759 HCFC1P51610 2035 aa12.92□□□□□ -0.34
SYNE3-204ENST00000555759 WISP2O76076 250 aa12.92□□□□□ -0.34
SYNE3-204ENST00000555759 COX17Q14061 63 aa12.92□□□□□ -0.34
SYNE3-204ENST00000555759 IGKV4-1P06312 121 aa12.91□□□□□ -0.34
SYNE3-204ENST00000555759 TSPEAR-AS2P59090 65 aa12.91□□□□□ -0.34
SYNE3-204ENST00000555759 IGLV2-18A0A075B6J9 118 aa12.9□□□□□ -0.34
SYNE3-204ENST00000555759 C2orf16Q68DN1 1984 aa12.9□□□□□ -0.34
SYNE3-204ENST00000555759 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.9□□□□□ -0.34
SYNE3-204ENST00000555759 A6NED7 52 aa12.89□□□□□ -0.35
SYNE3-204ENST00000555759 DEFB114Q30KQ6 69 aa12.89□□□□□ -0.35
SYNE3-204ENST00000555759 NTM-AS1Q6ZSK4 140 aa12.89□□□□□ -0.35
SYNE3-204ENST00000555759 PRR15LQ9BU68 103 aa12.88□□□□□ -0.35
SYNE3-204ENST00000555759 CD164L2Q6UWJ8 174 aa12.88□□□□□ -0.35
SYNE3-204ENST00000555759 B9D2Q9BPU9 175 aa12.88□□□□□ -0.35
SYNE3-204ENST00000555759 PCDH15Q96QU1 1955 aa12.88□□□□□ -0.35
SYNE3-204ENST00000555759 A0A087WVE0 104 aa12.87□□□□□ -0.35
SYNE3-204ENST00000555759 MRGPRG-AS1Q2M3A8 158 aa12.87□□□□□ -0.35
SYNE3-204ENST00000555759 DEFB113Q30KQ7 82 aa12.87□□□□□ -0.35
SYNE3-204ENST00000555759 DEFB135Q30KP9 77 aa12.87□□□□□ -0.35
SYNE3-204ENST00000555759 C1orf158Q8N1D5 194 aa12.85□□□□□ -0.35
SYNE3-204ENST00000555759 C3orf84H3BNL1 204 aa12.85□□□□□ -0.35
SYNE3-204ENST00000555759 KLK5Q9Y337 293 aaPredicted RBP12.85□□□□□ -0.35
SYNE3-204ENST00000555759 Q8IZM0 81 aa12.85□□□□□ -0.35
SYNE3-204ENST00000555759 PPDPFQ9H3Y8 114 aa12.85□□□□□ -0.35
SYNE3-204ENST00000555759 PRORYQ9H606 182 aa12.85□□□□□ -0.35
SYNE3-204ENST00000555759 CDC42SE2Q9NRR3 84 aa12.85□□□□□ -0.35
SYNE3-204ENST00000555759 LINC00242Q5T6M2 205 aa12.84□□□□□ -0.35
SYNE3-204ENST00000555759 DHRS4-AS1Q9P1J3 65 aa12.84□□□□□ -0.35
SYNE3-204ENST00000555759 M0R378 163 aa12.84□□□□□ -0.35
SYNE3-204ENST00000555759 LOC107984640A0A0U1RRK4 108 aa12.83□□□□□ -0.35
SYNE3-204ENST00000555759 LINC00959A0A1B0GUT2 108 aa12.83□□□□□ -0.35
SYNE3-204ENST00000555759 LINC01546A6NGU7 62 aa12.83□□□□□ -0.36
SYNE3-204ENST00000555759 C22orf34Q6ZV56 151 aa12.83□□□□□ -0.36
SYNE3-204ENST00000555759 AMELXQ99217 191 aa12.83□□□□□ -0.36
SYNE3-204ENST00000555759 SHISA2Q6UWI4 295 aa12.82□□□□□ -0.36
SYNE3-204ENST00000555759 WFDC10BQ8IUB3 73 aa12.82□□□□□ -0.36
SYNE3-204ENST00000555759 Q8N814 137 aa12.82□□□□□ -0.36
SYNE3-204ENST00000555759 XAGE1AQ9HD64 81 aa12.82□□□□□ -0.36
SYNE3-204ENST00000555759 SMIM1B2RUZ4 78 aa12.82□□□□□ -0.36
SYNE3-204ENST00000555759 RPS28P62857 69 aaKnown RBP12.82□□□□□ -0.36
SYNE3-204ENST00000555759 F8W735 103 aaPredicted RBP12.82□□□□□ -0.36
SYNE3-204ENST00000555759 PRO0628Q9UI54 55 aa12.82□□□□□ -0.36
SYNE3-204ENST00000555759 ADAMTSL4-AS1Q5T5F5 129 aa12.81□□□□□ -0.36
SYNE3-204ENST00000555759 DCANP1Q8TF63 244 aa12.81□□□□□ -0.36
SYNE3-204ENST00000555759 EML5Q05BV3 1969 aa12.81□□□□□ -0.36
SYNE3-204ENST00000555759 PRYO14603 147 aa12.8□□□□□ -0.36
SYNE3-204ENST00000555759 DEFB4AO15263 64 aa12.8□□□□□ -0.36
SYNE3-204ENST00000555759 CRYGAP11844 174 aa12.8□□□□□ -0.36
SYNE3-204ENST00000555759 HIGD2AQ9BW72 106 aa12.8□□□□□ -0.36
SYNE3-204ENST00000555759 TANC2Q9HCD6 1990 aa12.8□□□□□ -0.36
SYNE3-204ENST00000555759 PRO0461Q9UI25 63 aa12.79□□□□□ -0.36
SYNE3-204ENST00000555759 LTBP2Q14767 1821 aa12.79□□□□□ -0.36
SYNE3-204ENST00000555759 ZNF73O43830 326 aaPredicted RBP12.79□□□□□ -0.36
SYNE3-204ENST00000555759 Q8NA96 180 aa12.79□□□□□ -0.36
SYNE3-204ENST00000555759 PMAIP1Q13794 54 aa12.79□□□□□ -0.36
SYNE3-204ENST00000555759 Q6ZSV7 163 aa12.78□□□□□ -0.36
SYNE3-204ENST00000555759 SOSTDC1Q6X4U4 206 aa12.78□□□□□ -0.36
SYNE3-204ENST00000555759 A0A087WYN8 130 aa12.77□□□□□ -0.36
SYNE3-204ENST00000555759 TRBV10-3A0A0K0K1G6 114 aa12.77□□□□□ -0.36
SYNE3-204ENST00000555759 Q6YL49 198 aa12.77□□□□□ -0.37
SYNE3-204ENST00000555759 SMCPP49901 116 aaPredicted RBP12.76□□□□□ -0.37
SYNE3-204ENST00000555759 CHCHD7Q9BUK0 85 aa12.76□□□□□ -0.37
SYNE3-204ENST00000555759 C14orf177Q52M58 125 aa12.76□□□□□ -0.37
SYNE3-204ENST00000555759 FAM19A1Q7Z5A9 133 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms