RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 A0A087WYN8 130 aa10.26□□□□□ -0.77
PCF11-204ENST00000530660 IGKV2-29A2NJV5 120 aaPredicted RBP10.26□□□□□ -0.77
PCF11-204ENST00000530660 TRAV12-2A0A075B6T6 113 aa10.26□□□□□ -0.77
PCF11-204ENST00000530660 ZNF415Q09FC8 603 aa10.26□□□□□ -0.77
PCF11-204ENST00000530660 LINC01560Q8TB33 94 aa10.26□□□□□ -0.77
PCF11-204ENST00000530660 RBMY1BA6NDE4 496 aaKnown RBP10.25□□□□□ -0.77
PCF11-204ENST00000530660 RBMY1EA6NEQ0 496 aaKnown RBP10.25□□□□□ -0.77
PCF11-204ENST00000530660 IGKV3-20P01619 116 aa10.25□□□□□ -0.77
PCF11-204ENST00000530660 RBMY1DP0C7P1 496 aaKnown RBP10.25□□□□□ -0.77
PCF11-204ENST00000530660 RBMY1A1P0DJD3 496 aaKnown RBP10.25□□□□□ -0.77
PCF11-204ENST00000530660 RBMY1CP0DJD4 496 aa10.25□□□□□ -0.77
PCF11-204ENST00000530660 RBMY1FQ15415 496 aaKnown RBP10.25□□□□□ -0.77
PCF11-204ENST00000530660 FAM19A1Q7Z5A9 133 aa10.25□□□□□ -0.77
PCF11-204ENST00000530660 C16orf95Q9H693 158 aa10.25□□□□□ -0.77
PCF11-204ENST00000530660 ANKRD11Q6UB99 2663 aaPredicted RBP10.25□□□□□ -0.77
PCF11-204ENST00000530660 XCL1P47992 114 aa10.25□□□□□ -0.77
PCF11-204ENST00000530660 FP248Q71RG6 208 aaPredicted RBP10.25□□□□□ -0.77
PCF11-204ENST00000530660 XCL2Q9UBD3 114 aa10.25□□□□□ -0.77
PCF11-204ENST00000530660 BDP1A6H8Y1 2624 aa10.24□□□□□ -0.77
PCF11-204ENST00000530660 KLLNB2CW77 178 aa10.24□□□□□ -0.77
PCF11-204ENST00000530660 PRO3102Q9H379 93 aa10.24□□□□□ -0.77
PCF11-204ENST00000530660 IGHV3-16A0A0C4DH30 117 aa10.24□□□□□ -0.77
PCF11-204ENST00000530660 COX6A2Q02221 97 aa10.24□□□□□ -0.77
PCF11-204ENST00000530660 NDUFC2-KCTD14E9PQ53 114 aa10.23□□□□□ -0.77
PCF11-204ENST00000530660 ACACAQ13085 2346 aa10.23□□□□□ -0.77
PCF11-204ENST00000530660 SERP1Q9Y6X1 66 aa10.23□□□□□ -0.77
PCF11-204ENST00000530660 EPM2AB3EWF7 344 aa10.23□□□□□ -0.77
PCF11-204ENST00000530660 HIST2H2BCQ6DN03 193 aa10.23□□□□□ -0.77
PCF11-204ENST00000530660 HIST2H2BDQ6DRA6 164 aa10.23□□□□□ -0.77
PCF11-204ENST00000530660 H7BZZ5 65 aa10.22□□□□□ -0.77
PCF11-204ENST00000530660 SLPIP03973 132 aa10.22□□□□□ -0.77
PCF11-204ENST00000530660 BRK1Q8WUW1 75 aa10.22□□□□□ -0.77
PCF11-204ENST00000530660 LINC00474Q9P2X8 69 aa10.22□□□□□ -0.77
PCF11-204ENST00000530660 PSMB8P28062 276 aa10.21□□□□□ -0.77
PCF11-204ENST00000530660 LYPD5Q6UWN5 251 aa10.21□□□□□ -0.77
PCF11-204ENST00000530660 ENHOQ6UWT2 76 aa10.21□□□□□ -0.78
PCF11-204ENST00000530660 C2CD3Q4AC94 2353 aa10.2□□□□□ -0.78
PCF11-204ENST00000530660 CDSNQ15517 529 aa10.2□□□□□ -0.78
PCF11-204ENST00000530660 V9GYY9 64 aa10.2□□□□□ -0.78
PCF11-204ENST00000530660 GRNP28799 593 aaKnown RBP10.2□□□□□ -0.78
PCF11-204ENST00000530660 MINOS1Q5TGZ0 78 aa10.2□□□□□ -0.78
PCF11-204ENST00000530660 IGHV3-38A0A0C4DH36 116 aa10.2□□□□□ -0.78
PCF11-204ENST00000530660 LINC00467Q9BRT7 94 aa10.2□□□□□ -0.78
PCF11-204ENST00000530660 LINC00337Q8N6G1 96 aa10.19□□□□□ -0.78
PCF11-204ENST00000530660 ZFP36P26651 326 aaKnown RBP10.19□□□□□ -0.78
PCF11-204ENST00000530660 COL12A1Q99715 3063 aa10.19□□□□□ -0.78
PCF11-204ENST00000530660 ANKHD1Q8IWZ3 2542 aaKnown RBP10.19□□□□□ -0.78
PCF11-204ENST00000530660 KNCNA6PVL3 124 aa10.18□□□□□ -0.78
PCF11-204ENST00000530660 CHCHD7Q9BUK0 85 aa10.18□□□□□ -0.78
PCF11-204ENST00000530660 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.18□□□□□ -0.78
PCF11-204ENST00000530660 OBSCN-AS1Q96MR7 158 aa10.18□□□□□ -0.78
PCF11-204ENST00000530660 SNURFQ9Y675 71 aa10.18□□□□□ -0.78
PCF11-204ENST00000530660 CREBBPQ92793 2442 aa10.18□□□□□ -0.78
PCF11-204ENST00000530660 LECT2O14960 151 aa10.18□□□□□ -0.78
PCF11-204ENST00000530660 HTN1P15515 57 aa10.18□□□□□ -0.78
PCF11-204ENST00000530660 C1orf195Q5TG92 126 aa10.18□□□□□ -0.78
PCF11-204ENST00000530660 SPTAN1Q13813 2472 aaKnown RBP10.17□□□□□ -0.78
PCF11-204ENST00000530660 MINOS1-NBL1R4GNA1 71 aa10.17□□□□□ -0.78
PCF11-204ENST00000530660 IGHV3-11P01762 117 aa10.17□□□□□ -0.78
PCF11-204ENST00000530660 SMIM11BQ8TCY0 68 aa10.17□□□□□ -0.78
PCF11-204ENST00000530660 HRNRQ86YZ3 2850 aaPredicted RBP10.16□□□□□ -0.78
PCF11-204ENST00000530660 KLK9Q2XQG4 91 aa10.16□□□□□ -0.78
PCF11-204ENST00000530660 MIR7-3HGQ8N6C7 128 aa10.16□□□□□ -0.78
PCF11-204ENST00000530660 CRPP02741 224 aa10.16□□□□□ -0.78
PCF11-204ENST00000530660 RHPN1-AS1Q9BWJ2 59 aa10.15□□□□□ -0.78
PCF11-204ENST00000530660 SMIM26A0A096LP01 95 aa10.15□□□□□ -0.78
PCF11-204ENST00000530660 Q8NA96 180 aa10.15□□□□□ -0.78
PCF11-204ENST00000530660 CUBNO60494 3623 aa10.15□□□□□ -0.78
PCF11-204ENST00000530660 IGKV2-28A0A075B6P5 120 aa10.15□□□□□ -0.79
PCF11-204ENST00000530660 IGKV2D-28P01615 120 aa10.15□□□□□ -0.79
PCF11-204ENST00000530660 RMI2Q96E14 147 aa10.15□□□□□ -0.79
PCF11-204ENST00000530660 IGLV5-39A0A0G2JS06 123 aa10.14□□□□□ -0.79
PCF11-204ENST00000530660 SPINK13Q1W4C9 94 aa10.14□□□□□ -0.79
PCF11-204ENST00000530660 Q6ZSN1 163 aa10.14□□□□□ -0.79
PCF11-204ENST00000530660 PRM2P04554 102 aa10.14□□□□□ -0.79
PCF11-204ENST00000530660 SAA4P35542 130 aa10.14□□□□□ -0.79
PCF11-204ENST00000530660 OTOGLQ3ZCN5 2332 aa10.14□□□□□ -0.79
PCF11-204ENST00000530660 IGHV3OR16-12A0A075B7B8 117 aa10.13□□□□□ -0.79
PCF11-204ENST00000530660 SS18Q15532 418 aa10.13□□□□□ -0.79
PCF11-204ENST00000530660 COPS9Q8WXC6 57 aa10.13□□□□□ -0.79
PCF11-204ENST00000530660 IGLV5-45A0A087WSX0 123 aa10.13□□□□□ -0.79
PCF11-204ENST00000530660 SMIM1B2RUZ4 78 aa10.13□□□□□ -0.79
PCF11-204ENST00000530660 LINC00242Q5T6M2 205 aa10.13□□□□□ -0.79
PCF11-204ENST00000530660 IGHV1OR15-1A0A075B7D0 117 aa10.13□□□□□ -0.79
PCF11-204ENST00000530660 TRAV13-2A0A0B4J235 113 aa10.13□□□□□ -0.79
PCF11-204ENST00000530660 DGAT2L7PQ6IED9 249 aa10.13□□□□□ -0.79
PCF11-204ENST00000530660 SIRPDQ9H106 197 aa10.13□□□□□ -0.79
PCF11-204ENST00000530660 F8WEM9 126 aa10.12□□□□□ -0.79
PCF11-204ENST00000530660 CCKP06307 115 aa10.12□□□□□ -0.79
PCF11-204ENST00000530660 RPL36AP83881 106 aaKnown RBP10.12□□□□□ -0.79
PCF11-204ENST00000530660 LINC00482Q8N8I6 264 aa10.12□□□□□ -0.79
PCF11-204ENST00000530660 RPL36ALQ969Q0 106 aaKnown RBP10.12□□□□□ -0.79
PCF11-204ENST00000530660 RBM3P98179 157 aaKnown RBP10.12□□□□□ -0.79
PCF11-204ENST00000530660 BPESC1Q9GZL8 116 aa10.11□□□□□ -0.79
PCF11-204ENST00000530660 C5orf56Q8N8D9 126 aa10.11□□□□□ -0.79
PCF11-204ENST00000530660 SND1-IT1Q9HBX3 110 aa10.11□□□□□ -0.79
PCF11-204ENST00000530660 NDUFA4O00483 81 aa10.1□□□□□ -0.79
PCF11-204ENST00000530660 CCL21O00585 134 aa10.1□□□□□ -0.79
PCF11-204ENST00000530660 NBASA2RRP1 2371 aa10.1□□□□□ -0.79
PCF11-204ENST00000530660 C11orf72Q8NBR9 251 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms