RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 NCR3O14931 201 aa4.77□□□□□ -1.65
ZNF540-201ENST00000316433 ATP6V0E1O15342 81 aa4.77□□□□□ -1.65
ZNF540-201ENST00000316433 MIFP14174 115 aa4.77□□□□□ -1.65
ZNF540-201ENST00000316433 UBE2E2Q96LR5 201 aa4.77□□□□□ -1.65
ZNF540-201ENST00000316433 COX7A1P24310 79 aa4.77□□□□□ -1.65
ZNF540-201ENST00000316433 ZNF625Q96I27 306 aaPredicted RBP4.77□□□□□ -1.65
ZNF540-201ENST00000316433 APOC4P55056 127 aa4.76□□□□□ -1.65
ZNF540-201ENST00000316433 PRR9Q5T870 116 aa4.76□□□□□ -1.65
ZNF540-201ENST00000316433 KTN1-AS1Q86SY8 53 aa4.76□□□□□ -1.65
ZNF540-201ENST00000316433 S4R3C0 116 aa4.76□□□□□ -1.65
ZNF540-201ENST00000316433 HIST2H2BCQ6DN03 193 aa4.76□□□□□ -1.65
ZNF540-201ENST00000316433 HIST2H2BDQ6DRA6 164 aa4.76□□□□□ -1.65
ZNF540-201ENST00000316433 SUMO4Q6EEV6 95 aa4.76□□□□□ -1.65
ZNF540-201ENST00000316433 CADP27708 2225 aa4.76□□□□□ -1.65
ZNF540-201ENST00000316433 NBEAQ8NFP9 2946 aa4.76□□□□□ -1.65
ZNF540-201ENST00000316433 A0A087WWL8 130 aa4.75□□□□□ -1.65
ZNF540-201ENST00000316433 A0A087WYN8 130 aa4.75□□□□□ -1.65
ZNF540-201ENST00000316433 TRAV10A0A0B4J240 114 aa4.75□□□□□ -1.65
ZNF540-201ENST00000316433 NDUFA1O15239 70 aa4.75□□□□□ -1.65
ZNF540-201ENST00000316433 C20orf203Q8NBC4 194 aa4.75□□□□□ -1.65
ZNF540-201ENST00000316433 C11orf68Q9H3H3 251 aaKnown RBP4.75□□□□□ -1.65
ZNF540-201ENST00000316433 IGHV3-16A0A0C4DH30 117 aa4.75□□□□□ -1.65
ZNF540-201ENST00000316433 TRBV7-4A0A0J9YYF1 115 aa4.75□□□□□ -1.65
ZNF540-201ENST00000316433 UBL5Q9BZL1 73 aa4.75□□□□□ -1.65
ZNF540-201ENST00000316433 M0QY20 66 aa4.74□□□□□ -1.65
ZNF540-201ENST00000316433 ZFP36P26651 326 aaKnown RBP4.74□□□□□ -1.65
ZNF540-201ENST00000316433 H3BS24 57 aa4.74□□□□□ -1.65
ZNF540-201ENST00000316433 DSCR9P59020 149 aa4.74□□□□□ -1.65
ZNF540-201ENST00000316433 RPL11P62913 178 aaKnown RBP4.74□□□□□ -1.65
ZNF540-201ENST00000316433 UNQ9165/PRO28630Q6UXU0 137 aa4.74□□□□□ -1.65
ZNF540-201ENST00000316433 MIR7-3HGQ8N6C7 128 aa4.74□□□□□ -1.65
ZNF540-201ENST00000316433 F5H697 171 aa4.74□□□□□ -1.65
ZNF540-201ENST00000316433 CD28P10747 220 aa4.74□□□□□ -1.65
ZNF540-201ENST00000316433 Q1T7F1 81 aa4.74□□□□□ -1.65
ZNF540-201ENST00000316433 DYNLRB2Q8TF09 96 aa4.74□□□□□ -1.65
ZNF540-201ENST00000316433 FSHBP01225 129 aa4.73□□□□□ -1.65
ZNF540-201ENST00000316433 ZFHX3Q15911 3703 aa4.73□□□□□ -1.65
ZNF540-201ENST00000316433 F6UB75 175 aa4.73□□□□□ -1.65
ZNF540-201ENST00000316433 FAM104AQ969W3 186 aa4.73□□□□□ -1.65
ZNF540-201ENST00000316433 K7EQG2 157 aa4.72□□□□□ -1.65
ZNF540-201ENST00000316433 CELSR3Q9NYQ7 3312 aa4.72□□□□□ -1.65
ZNF540-201ENST00000316433 WDFY4Q6ZS81 3184 aa4.72□□□□□ -1.65
ZNF540-201ENST00000316433 H0YGX0 51 aa4.72□□□□□ -1.65
ZNF540-201ENST00000316433 FUSP35637 526 aaKnown RBP eCLIP4.72□□□□□ -1.65
ZNF540-201ENST00000316433 C11orf72Q8NBR9 251 aa4.72□□□□□ -1.65
ZNF540-201ENST00000316433 TMEM254Q8TBM7 123 aa4.72□□□□□ -1.65
ZNF540-201ENST00000316433 ORMDL1Q9P0S3 153 aa4.72□□□□□ -1.65
ZNF540-201ENST00000316433 TRIOBPQ9H2D6 2365 aa4.72□□□□□ -1.65
ZNF540-201ENST00000316433 IGLV5-39A0A0G2JS06 123 aa4.71□□□□□ -1.65
ZNF540-201ENST00000316433 M0R378 163 aa4.71□□□□□ -1.65
ZNF540-201ENST00000316433 LECT2O14960 151 aa4.71□□□□□ -1.65
ZNF540-201ENST00000316433 CRPP02741 224 aa4.71□□□□□ -1.65
ZNF540-201ENST00000316433 Q6ZRP5 223 aa4.71□□□□□ -1.65
ZNF540-201ENST00000316433 LINC00588Q9Y4M8 146 aa4.71□□□□□ -1.65
ZNF540-201ENST00000316433 IGHV3OR16-8A0A075B7F1 116 aa4.71□□□□□ -1.66
ZNF540-201ENST00000316433 IGKV2-29A2NJV5 120 aaPredicted RBP4.71□□□□□ -1.66
ZNF540-201ENST00000316433 JMJD7-PLA2G4BH0Y9G9 81 aa4.71□□□□□ -1.66
ZNF540-201ENST00000316433 GNRH2O43555 120 aa4.71□□□□□ -1.66
ZNF540-201ENST00000316433 CLEC19AQ6UXS0 136 aa4.71□□□□□ -1.66
ZNF540-201ENST00000316433 Q6ZTC4 211 aa4.71□□□□□ -1.66
ZNF540-201ENST00000316433 Q9H8V8 135 aa4.71□□□□□ -1.66
ZNF540-201ENST00000316433 FRYQ5TBA9 3013 aa4.7□□□□□ -1.66
ZNF540-201ENST00000316433 ERC2-IT1O76042 136 aa4.7□□□□□ -1.66
ZNF540-201ENST00000316433 IGHV3-23P01764 117 aa4.7□□□□□ -1.66
ZNF540-201ENST00000316433 RNASE13Q5GAN3 156 aaKnown RBP4.7□□□□□ -1.66
ZNF540-201ENST00000316433 IGHV1OR15-1A0A075B7D0 117 aa4.69□□□□□ -1.66
ZNF540-201ENST00000316433 PRYO14603 147 aa4.69□□□□□ -1.66
ZNF540-201ENST00000316433 PSPHP1O15172 72 aa4.69□□□□□ -1.66
ZNF540-201ENST00000316433 SLPIP03973 132 aa4.69□□□□□ -1.66
ZNF540-201ENST00000316433 UBE2BP63146 152 aa4.69□□□□□ -1.66
ZNF540-201ENST00000316433 Q6ZVQ6 151 aa4.69□□□□□ -1.66
ZNF540-201ENST00000316433 C11orf44Q8N8P7 122 aa4.69□□□□□ -1.66
ZNF540-201ENST00000316433 SMIM11BQ8TCY0 68 aa4.69□□□□□ -1.66
ZNF540-201ENST00000316433 hDV103S1A0JD37 113 aa4.69□□□□□ -1.66
ZNF540-201ENST00000316433 C8orf87E5RJ46 101 aa4.69□□□□□ -1.66
ZNF540-201ENST00000316433 LINC01547P58512 204 aaPredicted RBP4.69□□□□□ -1.66
ZNF540-201ENST00000316433 NREPQ16612 68 aa4.69□□□□□ -1.66
ZNF540-201ENST00000316433 BSNQ9UPA5 3926 aa4.69□□□□□ -1.66
ZNF540-201ENST00000316433 MUC4Q99102 2169 aa4.69□□□□□ -1.66
ZNF540-201ENST00000316433 LYRM9A8MSI8 78 aa4.69□□□□□ -1.66
ZNF540-201ENST00000316433 TMEM256-PLSCR3K7ERE1 68 aa4.69□□□□□ -1.66
ZNF540-201ENST00000316433 NDUFS5O43920 106 aa4.69□□□□□ -1.66
ZNF540-201ENST00000316433 FAM74A4Q5TZK3 123 aa4.69□□□□□ -1.66
ZNF540-201ENST00000316433 LINC00337Q8N6G1 96 aa4.69□□□□□ -1.66
ZNF540-201ENST00000316433 BBC3Q96PG8 261 aaPredicted RBP4.69□□□□□ -1.66
ZNF540-201ENST00000316433 IGHV3-35A0A0C4DH35 117 aa4.68□□□□□ -1.66
ZNF540-201ENST00000316433 IGHV3-66A0A0C4DH42 116 aa4.68□□□□□ -1.66
ZNF540-201ENST00000316433 LCE2DQ5TA82 110 aaPredicted RBP4.68□□□□□ -1.66
ZNF540-201ENST00000316433 Q8N3U1 123 aa4.68□□□□□ -1.66
ZNF540-201ENST00000316433 CDKN2A-AS1Q9UH64 79 aa4.68□□□□□ -1.66
ZNF540-201ENST00000316433 MGAQ8IWI9 3026 aa4.68□□□□□ -1.66
ZNF540-201ENST00000316433 MUC3AQ02505 3323 aa4.68□□□□□ -1.66
ZNF540-201ENST00000316433 LYNX1G3V0Z9 82 aa4.68□□□□□ -1.66
ZNF540-201ENST00000316433 LYNX1P0DP58 116 aa4.68□□□□□ -1.66
ZNF540-201ENST00000316433 RPL36AP83881 106 aaKnown RBP4.68□□□□□ -1.66
ZNF540-201ENST00000316433 LINC01560Q8TB33 94 aa4.68□□□□□ -1.66
ZNF540-201ENST00000316433 RPL36ALQ969Q0 106 aaKnown RBP4.68□□□□□ -1.66
ZNF540-201ENST00000316433 TRAV22A0A0B4J277 110 aa4.67□□□□□ -1.66
ZNF540-201ENST00000316433 TRBV10-1A0A0K0K1A3 114 aa4.67□□□□□ -1.66
ZNF540-201ENST00000316433 ZNF73O43830 326 aaPredicted RBP4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms