RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C HIS7P33734 552 aaKnown RBP2.56□□□□□ -2
UBP11YKR098C CTP1P38152 299 aa2.56□□□□□ -2
UBP11YKR098C UME6P39001 836 aa2.56□□□□□ -2
UBP11YKR098C FMP52P40008 231 aa2.56□□□□□ -2
UBP11YKR098C NDE1P40215 560 aa2.56□□□□□ -2
UBP11YKR098C PSP1P50896 841 aaKnown RBP2.56□□□□□ -2
UBP11YKR098C PHO23P50947 330 aa2.56□□□□□ -2
UBP11YKR098C CBK1P53894 756 aa2.56□□□□□ -2
UBP11YKR098C HOF1Q05080 669 aa2.56□□□□□ -2
UBP11YKR098C SUL2Q12325 893 aa2.56□□□□□ -2
UBP11YKR098C PCD1Q12524 340 aa2.56□□□□□ -2
UBP11YKR098C CTT1P06115 562 aa2.56□□□□□ -2
UBP11YKR098C THR1P17423 357 aaKnown RBP2.56□□□□□ -2
UBP11YKR098C AAC3P18238 307 aa2.56□□□□□ -2
UBP11YKR098C PAH1P32567 862 aa2.56□□□□□ -2
UBP11YKR098C DSS4P32601 143 aa2.56□□□□□ -2
UBP11YKR098C MRPL7P36519 292 aa2.56□□□□□ -2
UBP11YKR098C MPT5P39016 859 aaKnown RBP RIP-Chip data2.56□□□□□ -2not detected
UBP11YKR098C VPS8P39702 1274 aa2.56□□□□□ -2
UBP11YKR098C NOP16P40007 231 aaKnown RBP2.56□□□□□ -2
UBP11YKR098C TEL2P53038 688 aa2.56□□□□□ -2
UBP11YKR098C ESF2P53743 316 aaKnown RBP2.56□□□□□ -2
UBP11YKR098C EFR3Q03653 782 aaKnown RBP2.56□□□□□ -2
UBP11YKR098C CLU1Q03690 1277 aaKnown RBP2.56□□□□□ -2
UBP11YKR098C IMH1Q06704 911 aaKnown RBP2.56□□□□□ -2
UBP11YKR098C SDH5Q08230 162 aa2.56□□□□□ -2
UBP11YKR098C FUB1P25659 250 aa2.55□□□□□ -2
UBP11YKR098C RAD16P31244 790 aa2.55□□□□□ -2
UBP11YKR098C MFT1P33441 392 aaKnown RBP2.55□□□□□ -2
UBP11YKR098C TEF4P36008 412 aaKnown RBP2.55□□□□□ -2
UBP11YKR098C DHR2P36009 735 aaPredicted RBP2.55□□□□□ -2
UBP11YKR098C ELF1P36053 145 aa2.55□□□□□ -2
UBP11YKR098C YHR097CP38809 366 aaKnown RBP2.55□□□□□ -2
UBP11YKR098C ARB1P40024 610 aaKnown RBP2.55□□□□□ -2
UBP11YKR098C RIC1P40395 1056 aa2.55□□□□□ -2
UBP11YKR098C RNT1Q02555 471 aa2.55□□□□□ -2
UBP11YKR098C SNO4Q04902 237 aa2.55□□□□□ -2
UBP11YKR098C VAM6Q07468 1049 aa2.55□□□□□ -2
UBP11YKR098C HSP33Q08914 237 aaKnown RBP2.55□□□□□ -2
UBP11YKR098C HSP32Q08992 237 aa2.55□□□□□ -2
UBP11YKR098C COX17Q12287 69 aa2.55□□□□□ -2
UBP11YKR098C ENT1Q12518 454 aa2.55□□□□□ -2
UBP11YKR098C INH1P01097 85 aa2.54□□□□□ -2
UBP11YKR098C ALG7P07286 448 aa2.54□□□□□ -2
UBP11YKR098C FUM1P08417 488 aaKnown RBP2.54□□□□□ -2
UBP11YKR098C PET122P10355 254 aa2.54□□□□□ -2
UBP11YKR098C PFK2P16862 959 aaKnown RBP RIP-Chip data2.54□□□□□ -2not detected
UBP11YKR098C VPS34P22543 875 aa2.54□□□□□ -2
UBP11YKR098C CAP1P28495 268 aaKnown RBP2.54□□□□□ -2
UBP11YKR098C DEF1P35732 738 aaKnown RBP2.54□□□□□ -2
UBP11YKR098C YEL068CP39977 110 aa2.54□□□□□ -2
UBP11YKR098C ESL1P40456 1118 aa2.54□□□□□ -2
UBP11YKR098C USA1Q03714 838 aa2.54□□□□□ -2
UBP11YKR098C TSR2Q06672 205 aaKnown RBP2.54□□□□□ -2
UBP11YKR098C YLR040CQ07988 224 aa2.54□□□□□ -2
UBP11YKR098C TPK1P06244 397 aa2.54□□□□□ -2
UBP11YKR098C CDC31P06704 161 aaKnown RBP2.54□□□□□ -2
UBP11YKR098C PPR1P07272 904 aaPredicted RBP2.54□□□□□ -2
UBP11YKR098C CDC16P09798 840 aa2.54□□□□□ -2
UBP11YKR098C YCR061WP25639 631 aa2.54□□□□□ -2
UBP11YKR098C HRR25P29295 494 aaKnown RBP2.54□□□□□ -2
UBP11YKR098C ELM1P32801 640 aa2.54□□□□□ -2
UBP11YKR098C CNS1P33313 385 aa2.54□□□□□ -2
UBP11YKR098C AIM21P40563 679 aa2.54□□□□□ -2
UBP11YKR098C IDS2P46958 469 aa2.54□□□□□ -2
UBP11YKR098C COG1P53079 417 aa2.54□□□□□ -2
UBP11YKR098C TAM41P53230 385 aa2.54□□□□□ -2
UBP11YKR098C YAP1802P53309 568 aa2.54□□□□□ -2
UBP11YKR098C SNF12P53628 566 aa2.54□□□□□ -2
UBP11YKR098C CSL4P53859 292 aaPredicted RBP2.54□□□□□ -2
UBP11YKR098C YPL108WQ02872 168 aaPredicted RBP2.54□□□□□ -2
UBP11YKR098C GIR2Q03768 265 aaPredicted RBP2.54□□□□□ -2
UBP11YKR098C YKU80Q04437 629 aa2.54□□□□□ -2
UBP11YKR098C YDL086WQ07505 273 aa2.54□□□□□ -2
UBP11YKR098C AIM39Q08223 395 aa2.54□□□□□ -2
UBP11YKR098C USV1Q12132 391 aa2.54□□□□□ -2
UBP11YKR098C NTO1Q12311 748 aa2.54□□□□□ -2
UBP11YKR098C SEM1O94742 89 aa2.53□□□□□ -2
UBP11YKR098C ABF1P14164 731 aa2.53□□□□□ -2
UBP11YKR098C HCM1P25364 564 aa2.53□□□□□ -2
UBP11YKR098C SIP4P46954 829 aa2.53□□□□□ -2
UBP11YKR098C ZAP1P47043 880 aa2.53□□□□□ -2
UBP11YKR098C SRB7P47822 140 aa2.53□□□□□ -2
UBP11YKR098C YGR151CP53287 111 aa2.53□□□□□ -2
UBP11YKR098C DIP5P53388 608 aa2.53□□□□□ -2
UBP11YKR098C RPS15Q01855 142 aaKnown RBP2.53□□□□□ -2
UBP11YKR098C YSH1Q06224 779 aaPredicted RBP2.53□□□□□ -2
UBP11YKR098C TY2A-LR1P0C2J4 438 aa2.53□□□□□ -2
UBP11YKR098C TY2A-FP0CX61 438 aa2.53□□□□□ -2
UBP11YKR098C TY2A-GR2P0CX62 438 aa2.53□□□□□ -2
UBP11YKR098C MET8P15807 274 aa2.53□□□□□ -2
UBP11YKR098C TY2A-CP25383 438 aa2.53□□□□□ -2
UBP11YKR098C PPS1P38148 807 aa2.53□□□□□ -2
UBP11YKR098C UBS1P38290 277 aa2.53□□□□□ -2
UBP11YKR098C SDH8P38345 138 aa2.53□□□□□ -2
UBP11YKR098C BUD16P39988 312 aa2.53□□□□□ -2
UBP11YKR098C AVT1P47082 602 aa2.53□□□□□ -2
UBP11YKR098C TY2A-DR2Q03483 438 aa2.53□□□□□ -2
UBP11YKR098C GSF2Q04697 403 aaKnown RBP2.53□□□□□ -2
UBP11YKR098C CRF1Q04930 467 aa2.53□□□□□ -2
Retrieved 100 of 5,963 RNA–protein pairs in 31.6 ms