RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C IMD3P50095 523 aaKnown RBP3.28□□□□□ -1.88
RTR1YER139C ATX2Q12067 313 aa3.28□□□□□ -1.88
RTR1YER139C YPK1P12688 680 aaKnown RBP3.27□□□□□ -1.89
RTR1YER139C YHR033WP38690 423 aa3.27□□□□□ -1.89
RTR1YER139C YMR034CQ05131 434 aaPredicted RBP3.27□□□□□ -1.89
RTR1YER139C RPS21BQ3E754 87 aaKnown RBP3.27□□□□□ -1.89
RTR1YER139C HMG2P12684 1045 aa3.26□□□□□ -1.89
RTR1YER139C MAK32P23060 363 aa3.26□□□□□ -1.89
RTR1YER139C YJL193WP39542 402 aa3.26□□□□□ -1.89
RTR1YER139C RAD33Q04231 177 aa3.26□□□□□ -1.89
RTR1YER139C MLH2Q07980 695 aa3.26□□□□□ -1.89
RTR1YER139C VPS33P20795 691 aa3.25□□□□□ -1.89
RTR1YER139C GDA1P32621 518 aa3.25□□□□□ -1.89
RTR1YER139C RTT107P38850 1070 aa3.25□□□□□ -1.89
RTR1YER139C YNL092WP53934 400 aa3.25□□□□□ -1.89
RTR1YER139C RTT103Q05543 409 aa3.25□□□□□ -1.89
RTR1YER139C SEC65P29478 273 aa3.24□□□□□ -1.89
RTR1YER139C SCO2P38072 301 aa3.24□□□□□ -1.89
RTR1YER139C MET30P39014 640 aa3.24□□□□□ -1.89
RTR1YER139C YIL169CP40442 995 aa3.24□□□□□ -1.89
RTR1YER139C CIN1P40987 1014 aa3.24□□□□□ -1.89
RTR1YER139C CRT10Q08226 957 aa3.24□□□□□ -1.89
RTR1YER139C FMP46P36141 133 aaKnown RBP3.23□□□□□ -1.89
RTR1YER139C TOM71P38825 639 aaKnown RBP3.23□□□□□ -1.89
RTR1YER139C MGS1P40151 587 aa3.23□□□□□ -1.89
RTR1YER139C VTC3Q02725 835 aa3.23□□□□□ -1.89
RTR1YER139C YMR317WQ04893 1140 aa3.23□□□□□ -1.89
RTR1YER139C PFA4Q12006 378 aa3.23□□□□□ -1.89
RTR1YER139C GET3Q12154 354 aaKnown RBP3.23□□□□□ -1.89
RTR1YER139C YMR230W-AQ3E7B5 62 aa3.23□□□□□ -1.89
RTR1YER139C ILS1P09436 1072 aaKnown RBP3.22□□□□□ -1.89
RTR1YER139C CDC26P14724 124 aa3.22□□□□□ -1.89
RTR1YER139C YNL193WP53870 558 aa3.22□□□□□ -1.89
RTR1YER139C TFB2Q02939 513 aa3.22□□□□□ -1.89
RTR1YER139C BET2P20133 325 aa3.21□□□□□ -1.9
RTR1YER139C MF(ALPHA)2P32435 120 aa3.21□□□□□ -1.9
RTR1YER139C CDC5P32562 705 aa3.21□□□□□ -1.9
RTR1YER139C VID28P40547 921 aa3.21□□□□□ -1.9
RTR1YER139C YGR153WP48238 217 aa3.21□□□□□ -1.9
RTR1YER139C HOS2P53096 452 aaPredicted RBP3.21□□□□□ -1.9
RTR1YER139C POB3Q04636 552 aaKnown RBP3.21□□□□□ -1.9
RTR1YER139C PCK1P10963 549 aa3.2□□□□□ -1.9
RTR1YER139C DSS4P32601 143 aa3.2□□□□□ -1.9
RTR1YER139C OAF3P36023 863 aa3.2□□□□□ -1.9
RTR1YER139C CKB2P38930 258 aa3.2□□□□□ -1.9
RTR1YER139C HXT6P39003 570 aaKnown RBP3.2□□□□□ -1.9
RTR1YER139C HXT7P39004 570 aa3.2□□□□□ -1.9
RTR1YER139C MNN1P39106 762 aa3.2□□□□□ -1.9
RTR1YER139C YJR096WP47137 282 aa3.2□□□□□ -1.9
RTR1YER139C MTD1Q02046 320 aaKnown RBP3.2□□□□□ -1.9
RTR1YER139C RTC1Q08281 1341 aa3.19□□□□□ -1.9
RTR1YER139C TUF1P02992 437 aaKnown RBP3.19□□□□□ -1.9
RTR1YER139C YBR139WP38109 508 aa3.19□□□□□ -1.9
RTR1YER139C FAT1P38225 669 aa3.19□□□□□ -1.9
RTR1YER139C CIR1P42940 261 aa3.19□□□□□ -1.9
RTR1YER139C YNL058CP53947 316 aa3.19□□□□□ -1.9
RTR1YER139C YFL068WP0CX99 160 aa3.18□□□□□ -1.9
RTR1YER139C YLL066W-AP0CY00 160 aa3.18□□□□□ -1.9
RTR1YER139C YLL067W-AP0CY01 160 aa3.18□□□□□ -1.9
RTR1YER139C SEC18P18759 758 aaKnown RBP3.18□□□□□ -1.9
RTR1YER139C RRP43P25359 394 aaPredicted RBP3.18□□□□□ -1.9
RTR1YER139C RMA1P36001 430 aaKnown RBP3.18□□□□□ -1.9
RTR1YER139C SAD1P43589 448 aa3.18□□□□□ -1.9
RTR1YER139C YPT11P48559 417 aa3.18□□□□□ -1.9
RTR1YER139C SDA1P53313 767 aaKnown RBP3.18□□□□□ -1.9
RTR1YER139C YML119WQ03208 357 aa3.18□□□□□ -1.9
RTR1YER139C RAD34Q06665 692 aa3.18□□□□□ -1.9
RTR1YER139C YOR389WQ08912 624 aa3.18□□□□□ -1.9
RTR1YER139C PPZ1P26570 692 aa3.17□□□□□ -1.9
RTR1YER139C VRG4P40107 337 aa3.17□□□□□ -1.9
RTR1YER139C SKP2P42843 763 aa3.17□□□□□ -1.9
RTR1YER139C COG2P53271 262 aa3.17□□□□□ -1.9
RTR1YER139C ECM9Q02202 377 aa3.17□□□□□ -1.9
RTR1YER139C YHM2Q04013 314 aa3.17□□□□□ -1.9
RTR1YER139C ARA2Q04212 335 aa3.17□□□□□ -1.9
RTR1YER139C LYS21Q12122 440 aaKnown RBP3.17□□□□□ -1.9
RTR1YER139C Q0010Q9ZZX9 128 aa3.17□□□□□ -1.9
RTR1YER139C CNA1P23287 553 aa3.16□□□□□ -1.9
RTR1YER139C SFP1P32432 683 aa3.16□□□□□ -1.9
RTR1YER139C SDH8P38345 138 aa3.16□□□□□ -1.9
RTR1YER139C SQS1P53866 767 aaKnown RBP3.16□□□□□ -1.9
RTR1YER139C DIG1Q03063 452 aaKnown RBP3.16□□□□□ -1.9
RTR1YER139C HFI1Q12060 488 aa3.16□□□□□ -1.9
RTR1YER139C RRI1Q12468 440 aa3.16□□□□□ -1.9
RTR1YER139C AMD2P22580 549 aa3.15□□□□□ -1.91
RTR1YER139C PRP19P32523 503 aaKnown RBP3.15□□□□□ -1.91
RTR1YER139C ERV46P39727 415 aa3.15□□□□□ -1.91
RTR1YER139C BET4Q00618 327 aa3.15□□□□□ -1.91
RTR1YER139C CHO2P05374 869 aaKnown RBP3.14□□□□□ -1.91
RTR1YER139C RPS21AP0C0V8 87 aaKnown RBP3.14□□□□□ -1.91
RTR1YER139C RPL42AP0CX27 106 aaKnown RBP3.14□□□□□ -1.91
RTR1YER139C RPL42BP0CX28 106 aaKnown RBP3.14□□□□□ -1.91
RTR1YER139C KES1P35844 434 aaKnown RBP3.14□□□□□ -1.91
RTR1YER139C RAD26P40352 1085 aa3.14□□□□□ -1.91
RTR1YER139C ORC1P54784 914 aaPredicted RBP3.14□□□□□ -1.91
RTR1YER139C ECM16Q04217 1267 aaKnown RBP3.14□□□□□ -1.91
RTR1YER139C ECM22Q05958 814 aaPredicted RBP3.14□□□□□ -1.91
RTR1YER139C APM4Q99186 491 aa3.14□□□□□ -1.91
RTR1YER139C SEC12P11655 471 aa3.13□□□□□ -1.91
RTR1YER139C DHH1P39517 506 aaKnown RBP3.13□□□□□ -1.91
Retrieved 100 of 5,963 RNA–protein pairs in 18.1 ms