RNA–Protein interactions for RNA: YDR243C

PRP28, Transcript of RNA helicase in the DEAD-box family, yeast

Gene PRP28, Length 1,767 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP28	YDR243C	PGS1	P25578	521 aa		4.59	□□□□□ -1.67
PRP28	YDR243C	DAL80	P26343	269 aa		4.59	□□□□□ -1.67
PRP28	YDR243C	PEP3	P27801	918 aa		4.59	□□□□□ -1.67
PRP28	YDR243C	IRE1	P32361	1115 aa		4.59	□□□□□ -1.67
PRP28	YDR243C	OAF3	P36023	863 aa		4.59	□□□□□ -1.67
PRP28	YDR243C	AHP1	P38013	176 aa	Known RBP	4.59	□□□□□ -1.67
PRP28	YDR243C	ECM31	P38122	312 aa		4.59	□□□□□ -1.67
PRP28	YDR243C	YBR062C	P38239	180 aa		4.59	□□□□□ -1.67
PRP28	YDR243C	KEL1	P38853	1164 aa	Known RBP	4.59	□□□□□ -1.67
PRP28	YDR243C	DOT6	P40059	670 aa	Known RBP	4.59	□□□□□ -1.67
PRP28	YDR243C	YTA12	P40341	825 aa		4.59	□□□□□ -1.67
PRP28	YDR243C	RTS2	P40962	232 aa		4.59	□□□□□ -1.67
PRP28	YDR243C	SWP82	P43554	623 aa		4.59	□□□□□ -1.67
PRP28	YDR243C	YJL055W	P47044	245 aa		4.59	□□□□□ -1.67
PRP28	YDR243C	TOF1	P53840	1238 aa		4.59	□□□□□ -1.67
PRP28	YDR243C	VAC7	P53950	1165 aa		4.59	□□□□□ -1.67
PRP28	YDR243C	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	4.59	□□□□□ -1.67	not detected
PRP28	YDR243C	MAK10	Q02197	733 aa		4.59	□□□□□ -1.67
PRP28	YDR243C	RMI1	Q02685	241 aa		4.59	□□□□□ -1.67
PRP28	YDR243C	HAS1	Q03532	505 aa	Known RBP	4.59	□□□□□ -1.67
PRP28	YDR243C	PIG1	Q06216	648 aa		4.59	□□□□□ -1.67
PRP28	YDR243C	SIL1	Q08199	421 aa		4.59	□□□□□ -1.67
PRP28	YDR243C	VPS54	Q12071	889 aa		4.59	□□□□□ -1.67
PRP28	YDR243C	SEM1	O94742	89 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	ARG4	P04076	463 aa	Predicted RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	RPL6B	P05739	176 aa	Known RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	VMA6	P32366	345 aa	Known RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	DOA4	P32571	926 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	PMT1	P33775	817 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	AST1	P35183	429 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	LRG1	P35688	1017 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	YPT52	P36018	234 aa	Known RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	RDH54	P38086	958 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	CCZ1	P38273	704 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	POP7	P38291	140 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	MCX1	P38323	520 aa	Predicted RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	YHR112C	P38716	378 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	ALD5	P40047	520 aa	Known RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	EMP65	P40085	556 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	SIP5	P40210	489 aa	Known RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	YJR061W	P40355	935 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	CGR1	P53188	120 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	UTP8	P53276	713 aa	Known RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	COS6	P53344	381 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	RET3	P53600	189 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	YNL193W	P53870	558 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	FOX2	Q02207	900 aa	Known RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	RRN5	Q02983	363 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	GPI17	Q04080	534 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	SPC2	Q04969	178 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	FMP42	Q04991	504 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	HUA2	Q12134	243 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	EMP46	Q12396	444 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	YLR278C	Q05854	1341 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	RRP5	Q05022	1729 aa	Known RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	RPO21	P04050	1733 aa	Known RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	CHC1	P22137	1653 aa	Known RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	ULS1	Q08562	1619 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	MDS3	P53094	1487 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	RPS17A	P02407	136 aa	Known RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	CHO2	P05374	869 aa	Known RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	GLN4	P13188	809 aa	Known RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	RPS17B	P14127	136 aa	Known RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	PTP1	P25044	335 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	YCR051W	P25631	222 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	PRR1	P28708	518 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	EFT1	P32324	842 aa	Known RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	MDJ1	P35191	511 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	UBX7	P38349	436 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	BSD2	P38356	321 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	YAP3	P38749	330 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	RET2	P43621	546 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	ACF4	P47129	309 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	OKP1	P53298	406 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	CNM67	P53865	581 aa	Known RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	YNL165W	P53891	406 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	GIM3	P53900	129 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	TMA20	P89886	181 aa	Predicted RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	YMR114C	Q04471	368 aa	Known RBP	4.58	□□□□□ -1.68
PRP28	YDR243C	NSE3	Q05541	303 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	YPD1	Q07688	167 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	YLL007C	Q07799	665 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	YOS9	Q99220	542 aa		4.58	□□□□□ -1.68
PRP28	YDR243C	ATP6	P00854	259 aa		4.57	□□□□□ -1.68
PRP28	YDR243C	CPA2	P03965	1118 aa	Known RBP	4.57	□□□□□ -1.68
PRP28	YDR243C	PAB1	P04147	577 aa	Known RBP RIP-Chip data	4.57	□□□□□ -1.68	not detected
PRP28	YDR243C	RPL24A	P04449	155 aa	Known RBP	4.57	□□□□□ -1.68
PRP28	YDR243C	ARG81	P05085	880 aa		4.57	□□□□□ -1.68
PRP28	YDR243C	YGL041W-A	P0C5N3	154 aa		4.57	□□□□□ -1.68
PRP28	YDR243C	CDC24	P11433	854 aa	Predicted RBP	4.57	□□□□□ -1.68
PRP28	YDR243C	BAS1	P22035	811 aa		4.57	□□□□□ -1.68
PRP28	YDR243C	SPS22	P25380	463 aa		4.57	□□□□□ -1.68
PRP28	YDR243C	NGR1	P32831	672 aa	Known RBP	4.57	□□□□□ -1.68
PRP28	YDR243C	LAS1	P36146	502 aa	Predicted RBP	4.57	□□□□□ -1.68
PRP28	YDR243C	GRX7	P38068	203 aa		4.57	□□□□□ -1.68
PRP28	YDR243C	APM3	P38153	483 aa		4.57	□□□□□ -1.68
PRP28	YDR243C	APE4	P38821	490 aa		4.57	□□□□□ -1.68
PRP28	YDR243C	NOP16	P40007	231 aa	Known RBP	4.57	□□□□□ -1.68
PRP28	YDR243C	EFM4	P40516	257 aa		4.57	□□□□□ -1.68
PRP28	YDR243C	TDA10	P42938	290 aa		4.57	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 23.5 ms