RNA–Protein interactions for RNA: ENSMUST00000113706.9

Trim39-203, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,204 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-203ENSMUST00000113706 Lrrc2Q8VDB8 371 aa18.47■□□□□ 0.55
Trim39-203ENSMUST00000113706 StrcQ8VIM6 1809 aa18.47■□□□□ 0.55
Trim39-203ENSMUST00000113706 Cdkl5Q3UTQ8 938 aa18.47■□□□□ 0.55
Trim39-203ENSMUST00000113706 CerkQ8K4Q7 531 aa18.47■□□□□ 0.55
Trim39-203ENSMUST00000113706 Utp3Q9JI13 469 aaKnown RBP18.47■□□□□ 0.55
Trim39-203ENSMUST00000113706 Col20a1Q923P0 1320 aa18.47■□□□□ 0.55
Trim39-203ENSMUST00000113706 Golgb1E9PVZ8 3238 aa18.46■□□□□ 0.55
Trim39-203ENSMUST00000113706 Dok7Q18PE0 504 aa18.46■□□□□ 0.55
Trim39-203ENSMUST00000113706 Anp32cQ64G17 123 aa18.46■□□□□ 0.55
Trim39-203ENSMUST00000113706 Slc51aQ8R000 340 aa18.46■□□□□ 0.55
Trim39-203ENSMUST00000113706 Slc44a4Q91VA1 707 aa18.46■□□□□ 0.55
Trim39-203ENSMUST00000113706 Ccdc173A0JLY1 547 aa18.46■□□□□ 0.55
Trim39-203ENSMUST00000113706 Kansl3A2RSY1 903 aaKnown RBP18.46■□□□□ 0.55
Trim39-203ENSMUST00000113706 PcQ05920 1178 aa18.46■□□□□ 0.55
Trim39-203ENSMUST00000113706 Rcan1Q9JHG6 198 aa18.46■□□□□ 0.55
Trim39-203ENSMUST00000113706 Mtcl1Q3UHU5 1945 aa18.46■□□□□ 0.55
Trim39-203ENSMUST00000113706 Cplx2P84086 134 aa18.45■□□□□ 0.54
Trim39-203ENSMUST00000113706 Adcy5P84309 1262 aa18.45■□□□□ 0.54
Trim39-203ENSMUST00000113706 Sec23aQ01405 765 aa18.45■□□□□ 0.54
Trim39-203ENSMUST00000113706 Gdf11Q9Z1W4 405 aa18.45■□□□□ 0.54
Trim39-203ENSMUST00000113706 Wdhd1P59328 1117 aa18.45■□□□□ 0.54
Trim39-203ENSMUST00000113706 Foxp1P58462 705 aa18.45■□□□□ 0.54
Trim39-203ENSMUST00000113706 Gja5Q01231 358 aa18.45■□□□□ 0.54
Trim39-203ENSMUST00000113706 Best3Q6H1V1 669 aa18.45■□□□□ 0.54
Trim39-203ENSMUST00000113706 Tex2Q6ZPJ0 1128 aaKnown RBP18.45■□□□□ 0.54
Trim39-203ENSMUST00000113706 Pnma3Q8JZW8 466 aa18.45■□□□□ 0.54
Trim39-203ENSMUST00000113706 Tcof1O08784 1320 aaKnown RBP18.44■□□□□ 0.54
Trim39-203ENSMUST00000113706 Klhl34A2AI76 644 aa18.44■□□□□ 0.54
Trim39-203ENSMUST00000113706 Tyro3P55144 880 aa18.44■□□□□ 0.54
Trim39-203ENSMUST00000113706 Ccdc162pQ0VG85 912 aa18.44■□□□□ 0.54
Trim39-203ENSMUST00000113706 Tmem109Q3UBX0 243 aa18.44■□□□□ 0.54
Trim39-203ENSMUST00000113706 Fhdc1Q3ULZ2 1149 aa18.44■□□□□ 0.54
Trim39-203ENSMUST00000113706 Rrp12Q6P5B0 1295 aaKnown RBP18.44■□□□□ 0.54
Trim39-203ENSMUST00000113706 Bicd2Q921C5 820 aa18.44■□□□□ 0.54
Trim39-203ENSMUST00000113706 Trmt44Q9D2Q2 713 aa18.44■□□□□ 0.54
Trim39-203ENSMUST00000113706 TnmdQ9EP64 317 aa18.44■□□□□ 0.54
Trim39-203ENSMUST00000113706 Nfe2l3Q9WTM4 660 aa18.44■□□□□ 0.54
Trim39-203ENSMUST00000113706 Pdcl2Q78Y63 240 aa18.44■□□□□ 0.54
Trim39-203ENSMUST00000113706 Ttll4Q80UG8 1193 aa18.44■□□□□ 0.54
Trim39-203ENSMUST00000113706 Glg1Q61543 1175 aaKnown RBP18.44■□□□□ 0.54
Trim39-203ENSMUST00000113706 Bach2P97303 839 aa18.43■□□□□ 0.54
Trim39-203ENSMUST00000113706 Ttc27Q8CD92 847 aa18.43■□□□□ 0.54
Trim39-203ENSMUST00000113706 Ces1hD3Z298 562 aa18.43■□□□□ 0.54
Trim39-203ENSMUST00000113706 Ythdc1E9Q5K9 736 aaKnown RBP18.43■□□□□ 0.54
Trim39-203ENSMUST00000113706 Slitrk3Q810B9 980 aa18.43■□□□□ 0.54
Trim39-203ENSMUST00000113706 Acnat2Q8BGG9 420 aa18.43■□□□□ 0.54
Trim39-203ENSMUST00000113706 Ccdc112A0AUP1 442 aa18.42■□□□□ 0.54
Trim39-203ENSMUST00000113706 Ccng2O08918 344 aa18.42■□□□□ 0.54
Trim39-203ENSMUST00000113706 Gas1Q01721 343 aa18.42■□□□□ 0.54
Trim39-203ENSMUST00000113706 Glis3Q6XP49 780 aa18.42■□□□□ 0.54
Trim39-203ENSMUST00000113706 QarsQ8BML9 775 aa18.42■□□□□ 0.54
Trim39-203ENSMUST00000113706 Chrna2Q91X60 512 aa18.42■□□□□ 0.54
Trim39-203ENSMUST00000113706 Scn9aQ62205 1984 aa18.42■□□□□ 0.54
Trim39-203ENSMUST00000113706 Rtn1Q8K0T0 780 aa18.42■□□□□ 0.54
Trim39-203ENSMUST00000113706 Brpf3B2KF05 1204 aaKnown RBP18.42■□□□□ 0.54
Trim39-203ENSMUST00000113706 Mctp1E9PV86 951 aa18.42■□□□□ 0.54
Trim39-203ENSMUST00000113706 Zbtb21E9Q444 1094 aa18.42■□□□□ 0.54
Trim39-203ENSMUST00000113706 Hmx1O70218 332 aa18.42■□□□□ 0.54
Trim39-203ENSMUST00000113706 Pus7lQ8CE46 702 aa18.42■□□□□ 0.54
Trim39-203ENSMUST00000113706 Mx2Q9WVP9 655 aa18.42■□□□□ 0.54
Trim39-203ENSMUST00000113706 PnnO35691 725 aaKnown RBP18.41■□□□□ 0.54
Trim39-203ENSMUST00000113706 Mindy4Q3UQI9 744 aa18.41■□□□□ 0.54
Trim39-203ENSMUST00000113706 Col4a3bpQ9EQG9 624 aa18.41■□□□□ 0.54
Trim39-203ENSMUST00000113706 Adamtsl1Q8BLI0 1745 aa18.41■□□□□ 0.54
Trim39-203ENSMUST00000113706 Cfap58B2RW38 873 aa18.41■□□□□ 0.54
Trim39-203ENSMUST00000113706 Taok2Q6ZQ29 1240 aa18.41■□□□□ 0.54
Trim39-203ENSMUST00000113706 Stn1Q8K2X3 378 aa18.41■□□□□ 0.54
Trim39-203ENSMUST00000113706 Clic4Q9QYB1 253 aa18.4■□□□□ 0.54
Trim39-203ENSMUST00000113706 Tsc2Q61037 1814 aa18.4■□□□□ 0.54
Trim39-203ENSMUST00000113706 Prr16A3KMN5 304 aa18.4■□□□□ 0.54
Trim39-203ENSMUST00000113706 Dnm1P39053 867 aa18.4■□□□□ 0.54
Trim39-203ENSMUST00000113706 Polr3gQ6NXY9 223 aa18.4■□□□□ 0.54
Trim39-203ENSMUST00000113706 Ush1cQ9ES64 910 aa18.4■□□□□ 0.54
Trim39-203ENSMUST00000113706 Gm36210A0A1B0GS00 229 aa18.4■□□□□ 0.54
Trim39-203ENSMUST00000113706 Zkscan7E9PVW1 718 aa18.4■□□□□ 0.54
Trim39-203ENSMUST00000113706 Nmt2O70311 529 aa18.4■□□□□ 0.54
Trim39-203ENSMUST00000113706 TbcaP48428 108 aaKnown RBP18.4■□□□□ 0.54
Trim39-203ENSMUST00000113706 MpndQ3TV65 487 aa18.4■□□□□ 0.54
Trim39-203ENSMUST00000113706 Atp1a3Q6PIC6 1013 aa18.4■□□□□ 0.54
Trim39-203ENSMUST00000113706 Prkag3Q8BGM7 489 aa18.4■□□□□ 0.54
Trim39-203ENSMUST00000113706 Sec62Q8BU14 398 aaKnown RBP18.4■□□□□ 0.54
Trim39-203ENSMUST00000113706 Srek1Q8BZX4 494 aaKnown RBP18.4■□□□□ 0.54
Trim39-203ENSMUST00000113706 Snw1Q9CSN1 536 aaKnown RBP18.4■□□□□ 0.54
Trim39-203ENSMUST00000113706 Mmel1Q9JLI3 765 aa18.4■□□□□ 0.54
Trim39-203ENSMUST00000113706 Rpusd2Q149F1 553 aa18.39■□□□□ 0.53
Trim39-203ENSMUST00000113706 Myl6bQ8CI43 207 aa18.39■□□□□ 0.53
Trim39-203ENSMUST00000113706 Ccer1Q9CQL2 403 aa18.39■□□□□ 0.53
Trim39-203ENSMUST00000113706 Rbm6S4R1W5 1118 aaKnown RBP18.39■□□□□ 0.53
Trim39-203ENSMUST00000113706 CebpaP53566 359 aa18.38■□□□□ 0.53
Trim39-203ENSMUST00000113706 Ppp4cP97470 307 aa18.38■□□□□ 0.53
Trim39-203ENSMUST00000113706 Sh3bgrQ9WUZ7 214 aa18.38■□□□□ 0.53
Trim39-203ENSMUST00000113706 Aox4Q3TYQ9 1336 aa18.38■□□□□ 0.53
Trim39-203ENSMUST00000113706 Slc1a4O35874 532 aa18.38■□□□□ 0.53
Trim39-203ENSMUST00000113706 Col23a1Q8K4G2 532 aa18.38■□□□□ 0.53
Trim39-203ENSMUST00000113706 Pcdhb15Q91Y04 786 aa18.38■□□□□ 0.53
Trim39-203ENSMUST00000113706 Chrna5Q2MKA5 467 aa18.37■□□□□ 0.53
Trim39-203ENSMUST00000113706 Aak1Q3UHJ0 959 aa18.37■□□□□ 0.53
Trim39-203ENSMUST00000113706 Gm28047Q3US59 414 aa18.37■□□□□ 0.53
Trim39-203ENSMUST00000113706 AsnsQ61024 561 aa18.37■□□□□ 0.53
Trim39-203ENSMUST00000113706 CrebrfQ8CDG5 640 aaKnown RBP18.37■□□□□ 0.53
Retrieved 100 of 22,080 RNA–protein pairs in 52.5 ms