Protein–RNA interactions for Protein: Q8K4G2

Col23a1, Collagen alpha-1(XXIII) chain, mousemouse

Predictions only

Length 532 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col23a1Q8K4G2 Gm25239-201ENSMUST00000174915 86 ntBASIC50.46■■■■■ 5.67
Col23a1Q8K4G2 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC47.01■■■■■ 5.12
Col23a1Q8K4G2 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC46.22■■■■■ 4.99
Col23a1Q8K4G2 Gm24109-201ENSMUST00000175489 103 ntBASIC44.08■■■■■ 4.65
Col23a1Q8K4G2 Gm15042-201ENSMUST00000120212 883 ntBASIC43.36■■■■■ 4.53
Col23a1Q8K4G2 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC42.65■■■■■ 4.42
Col23a1Q8K4G2 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC42.53■■■■■ 4.4
Col23a1Q8K4G2 Gm15045-201ENSMUST00000117359 883 ntBASIC42.33■■■■■ 4.37
Col23a1Q8K4G2 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC42.33■■■■■ 4.37
Col23a1Q8K4G2 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC42.21■■■■■ 4.35
Col23a1Q8K4G2 Gm23366-201ENSMUST00000175022 89 ntBASIC42■■■■■ 4.31
Col23a1Q8K4G2 AC153911.1-202ENSMUST00000218534 1034 ntBASIC41.39■■■■■ 4.22
Col23a1Q8K4G2 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC40.97■■■■■ 4.15
Col23a1Q8K4G2 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC40.94■■■■■ 4.14
Col23a1Q8K4G2 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC40.94■■■■■ 4.14
Col23a1Q8K4G2 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC40.77■■■■■ 4.12
Col23a1Q8K4G2 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC40.58■■■■■ 4.09
Col23a1Q8K4G2 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC40.26■■■■■ 4.04
Col23a1Q8K4G2 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC40.2■■■■■ 4.03
Col23a1Q8K4G2 Gm25238-201ENSMUST00000174914 89 ntBASIC40.1■■■■■ 4.01
Col23a1Q8K4G2 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC40.07■■■■■ 4.01
Col23a1Q8K4G2 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC40.04■■■■■ 4
Col23a1Q8K4G2 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC39.41■■■■□ 3.9
Col23a1Q8K4G2 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC39.2■■■■□ 3.87
Col23a1Q8K4G2 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC39.19■■■■□ 3.86
Col23a1Q8K4G2 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC39.14■■■■□ 3.86
Col23a1Q8K4G2 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC39.09■■■■□ 3.85
Col23a1Q8K4G2 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC38.93■■■■□ 3.82
Col23a1Q8K4G2 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC38.83■■■■□ 3.81
Col23a1Q8K4G2 Gm25262-201ENSMUST00000174934 133 ntBASIC38.7■■■■□ 3.79
Col23a1Q8K4G2 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC38.64■■■■□ 3.78
Col23a1Q8K4G2 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC38.63■■■■□ 3.77
Col23a1Q8K4G2 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC38.57■■■■□ 3.76
Col23a1Q8K4G2 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC38.49■■■■□ 3.75
Col23a1Q8K4G2 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC38.32■■■■□ 3.72
Col23a1Q8K4G2 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC38.26■■■■□ 3.72
Col23a1Q8K4G2 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC38.25■■■■□ 3.71
Col23a1Q8K4G2 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC38.23■■■■□ 3.71
Col23a1Q8K4G2 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC38.18■■■■□ 3.7
Col23a1Q8K4G2 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC38.15■■■■□ 3.7
Col23a1Q8K4G2 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC38.07■■■■□ 3.68
Col23a1Q8K4G2 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC38.06■■■■□ 3.68
Col23a1Q8K4G2 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC38.04■■■■□ 3.68
Col23a1Q8K4G2 Gm26115-201ENSMUST00000175605 87 ntBASIC38.02■■■■□ 3.68
Col23a1Q8K4G2 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC38.01■■■■□ 3.68
Col23a1Q8K4G2 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC37.94■■■■□ 3.66
Col23a1Q8K4G2 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC37.9■■■■□ 3.66
Col23a1Q8K4G2 Gm27325-201ENSMUST00000175467 74 ntBASIC37.89■■■■□ 3.66
Col23a1Q8K4G2 Gm8109-201ENSMUST00000194076 746 ntBASIC37.76■■■■□ 3.64
Col23a1Q8K4G2 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC37.74■■■■□ 3.63
Col23a1Q8K4G2 Rab21-202ENSMUST00000218831 843 ntBASIC37.64■■■■□ 3.62
Col23a1Q8K4G2 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC37.63■■■■□ 3.61
Col23a1Q8K4G2 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC37.6■■■■□ 3.61
Col23a1Q8K4G2 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC37.45■■■■□ 3.59
Col23a1Q8K4G2 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC37.38■■■■□ 3.57
Col23a1Q8K4G2 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC37.36■■■■□ 3.57
Col23a1Q8K4G2 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC37.24■■■■□ 3.55
Col23a1Q8K4G2 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC37.22■■■■□ 3.55
Col23a1Q8K4G2 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC37.21■■■■□ 3.55
Col23a1Q8K4G2 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC37.19■■■■□ 3.54
Col23a1Q8K4G2 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC37.02■■■■□ 3.52
Col23a1Q8K4G2 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC37■■■■□ 3.51
Col23a1Q8K4G2 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC36.95■■■■□ 3.51
Col23a1Q8K4G2 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC36.9■■■■□ 3.5
Col23a1Q8K4G2 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC36.89■■■■□ 3.5
Col23a1Q8K4G2 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC36.89■■■■□ 3.5
Col23a1Q8K4G2 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC36.84■■■■□ 3.49
Col23a1Q8K4G2 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC36.69■■■■□ 3.46
Col23a1Q8K4G2 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC36.68■■■■□ 3.46
Col23a1Q8K4G2 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC36.68■■■■□ 3.46
Col23a1Q8K4G2 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC36.59■■■■□ 3.45
Col23a1Q8K4G2 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC36.57■■■■□ 3.44
Col23a1Q8K4G2 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC36.52■■■■□ 3.44
Col23a1Q8K4G2 Gm17082-201ENSMUST00000166043 1091 ntBASIC36.51■■■■□ 3.44
Col23a1Q8K4G2 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC36.49■■■■□ 3.43
Col23a1Q8K4G2 Gm24804-201ENSMUST00000174982 85 ntBASIC36.48■■■■□ 3.43
Col23a1Q8K4G2 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC36.43■■■■□ 3.42
Col23a1Q8K4G2 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC36.33■■■■□ 3.41
Col23a1Q8K4G2 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC36.31■■■■□ 3.4
Col23a1Q8K4G2 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC36.16■■■■□ 3.38
Col23a1Q8K4G2 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC36.13■■■■□ 3.37
Col23a1Q8K4G2 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC36.09■■■■□ 3.37
Col23a1Q8K4G2 Gm27322-201ENSMUST00000184007 104 ntBASIC36.07■■■■□ 3.36
Col23a1Q8K4G2 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC36.07■■■■□ 3.36
Col23a1Q8K4G2 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC36.05■■■■□ 3.36
Col23a1Q8K4G2 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC36.04■■■■□ 3.36
Col23a1Q8K4G2 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC36.04■■■■□ 3.36
Col23a1Q8K4G2 Psd-208ENSMUST00000224556 2034 ntBASIC36.02■■■■□ 3.36
Col23a1Q8K4G2 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC35.99■■■■□ 3.35
Col23a1Q8K4G2 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC35.94■■■■□ 3.34
Col23a1Q8K4G2 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC35.92■■■■□ 3.34
Col23a1Q8K4G2 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC35.91■■■■□ 3.34
Col23a1Q8K4G2 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC35.9■■■■□ 3.34
Col23a1Q8K4G2 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC35.87■■■■□ 3.33
Col23a1Q8K4G2 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC35.87■■■■□ 3.33
Col23a1Q8K4G2 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC35.87■■■■□ 3.33
Col23a1Q8K4G2 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC35.8■■■■□ 3.32
Col23a1Q8K4G2 Zfp131-205ENSMUST00000223812 663 ntBASIC35.75■■■■□ 3.31
Col23a1Q8K4G2 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC35.75■■■■□ 3.31
Col23a1Q8K4G2 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC35.73■■■■□ 3.31
Retrieved 100 of 76,532 protein–RNA pairs in 8.3 ms