RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeastyeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF4YKR036C TY1B-JR2P47100 1755 aaKnown RBP7□□□□□ -1.29
CAF4YKR036C TY1B-ER2Q03619 1755 aa7□□□□□ -1.29
CAF4YKR036C TY1B-MR1Q04214 1755 aa7□□□□□ -1.29
CAF4YKR036C TY1B-MR2Q04670 1755 aaKnown RBP7□□□□□ -1.29
CAF4YKR036C TY1B-LR1Q12088 1755 aaKnown RBP7□□□□□ -1.29
CAF4YKR036C TY1B-NL1Q12112 1755 aa7□□□□□ -1.29
CAF4YKR036C TY1B-GR1Q12141 1755 aa7□□□□□ -1.29
CAF4YKR036C TY1B-BLQ12490 1755 aa7□□□□□ -1.29
CAF4YKR036C VTH1P40438 1549 aa6.99□□□□□ -1.29
CAF4YKR036C VTH2P40890 1549 aa6.99□□□□□ -1.29
CAF4YKR036C NTE1Q04958 1679 aa6.98□□□□□ -1.29
CAF4YKR036C YFR006WP43590 535 aa6.97□□□□□ -1.29
CAF4YKR036C MYO4P32492 1471 aa6.97□□□□□ -1.29
CAF4YKR036C RPO21P04050 1733 aaKnown RBP6.96□□□□□ -1.3
CAF4YKR036C SNT2P53127 1403 aa6.95□□□□□ -1.3
CAF4YKR036C MET10P39692 1035 aa6.93□□□□□ -1.3
CAF4YKR036C YTA7P40340 1379 aa6.93□□□□□ -1.3
CAF4YKR036C STH1P32597 1359 aa6.91□□□□□ -1.3
CAF4YKR036C FAP1P53971 965 aa6.9□□□□□ -1.3
CAF4YKR036C SNQ2P32568 1501 aaKnown RBP6.9□□□□□ -1.3
CAF4YKR036C IRC20Q06554 1556 aa6.9□□□□□ -1.31
CAF4YKR036C NUP170P38181 1502 aa6.89□□□□□ -1.31
CAF4YKR036C RTT106P40161 455 aa6.88□□□□□ -1.31
CAF4YKR036C DNF2Q12675 1612 aa6.87□□□□□ -1.31
CAF4YKR036C ULS1Q08562 1619 aa6.83□□□□□ -1.32
CAF4YKR036C PDR12Q02785 1511 aa6.83□□□□□ -1.32
CAF4YKR036C SPO14P36126 1683 aa6.83□□□□□ -1.32
CAF4YKR036C IQG1Q12280 1495 aa6.79□□□□□ -1.32
CAF4YKR036C TRM3Q07527 1436 aa6.79□□□□□ -1.32
CAF4YKR036C NUP157P40064 1391 aaKnown RBP6.78□□□□□ -1.32
CAF4YKR036C PDR10P51533 1564 aa6.77□□□□□ -1.33
CAF4YKR036C GDB1Q06625 1536 aa6.77□□□□□ -1.33
CAF4YKR036C MLP2P40457 1679 aa6.76□□□□□ -1.33
CAF4YKR036C DOP1Q03921 1698 aa6.76□□□□□ -1.33
CAF4YKR036C BUD3P25558 1636 aa6.75□□□□□ -1.33
CAF4YKR036C EBP2P36049 427 aaKnown RBP6.73□□□□□ -1.33
CAF4YKR036C YOR093CQ12275 1648 aa6.72□□□□□ -1.33
CAF4YKR036C TAF7Q05021 590 aa6.72□□□□□ -1.33
CAF4YKR036C SAS10Q12136 610 aaPredicted RBP6.72□□□□□ -1.33
CAF4YKR036C CAB3P36076 571 aa6.71□□□□□ -1.34
CAF4YKR036C PDR15Q04182 1529 aaKnown RBP6.7□□□□□ -1.34
CAF4YKR036C IFH1P39520 1085 aa6.67□□□□□ -1.34
CAF4YKR036C ARO1P08566 1588 aaKnown RBP6.66□□□□□ -1.34
CAF4YKR036C YAP3P38749 330 aa6.63□□□□□ -1.35
CAF4YKR036C CHC1P22137 1653 aaKnown RBP6.63□□□□□ -1.35
CAF4YKR036C CAT8P39113 1433 aa6.63□□□□□ -1.35
CAF4YKR036C SEC7P11075 2009 aaKnown RBP6.61□□□□□ -1.35
CAF4YKR036C ENP1P38333 483 aaKnown RBP6.6□□□□□ -1.35
CAF4YKR036C CKB1P43639 278 aa6.6□□□□□ -1.35
CAF4YKR036C DNF3Q12674 1656 aa6.59□□□□□ -1.35
CAF4YKR036C GEA1P47102 1408 aaPredicted RBP6.59□□□□□ -1.35
CAF4YKR036C BNR1P40450 1375 aa6.58□□□□□ -1.36
CAF4YKR036C URN1Q06525 465 aaKnown RBP6.58□□□□□ -1.36
CAF4YKR036C YSP2Q06681 1438 aa6.57□□□□□ -1.36
CAF4YKR036C MAK10Q02197 733 aa6.57□□□□□ -1.36
CAF4YKR036C YPR148CQ06523 435 aa6.57□□□□□ -1.36
CAF4YKR036C TY3B-GQ99315 1547 aa6.55□□□□□ -1.36
CAF4YKR036C YBT1P32386 1661 aa6.53□□□□□ -1.36
CAF4YKR036C PRY3P47033 881 aa6.5□□□□□ -1.37
CAF4YKR036C SIS2P36024 562 aa6.46□□□□□ -1.38
CAF4YKR036C IPL1P38991 367 aa6.46□□□□□ -1.38
CAF4YKR036C SRB8P25648 1427 aa6.45□□□□□ -1.38
CAF4YKR036C YMR196WQ04336 1088 aa6.44□□□□□ -1.38
CAF4YKR036C BUD21Q08492 214 aaPredicted RBP6.44□□□□□ -1.38
CAF4YKR036C IKI3Q06706 1349 aaKnown RBP6.42□□□□□ -1.38
CAF4YKR036C USO1P25386 1790 aa6.42□□□□□ -1.38
CAF4YKR036C POL5P39985 1022 aaKnown RBP6.42□□□□□ -1.38
CAF4YKR036C HAP1P0CE41 1502 aa6.41□□□□□ -1.38
CAF4YKR036C SPT7P35177 1332 aa6.41□□□□□ -1.38
CAF4YKR036C THI12P42883 340 aa6.41□□□□□ -1.38
CAF4YKR036C THI5P43534 340 aa6.41□□□□□ -1.38
CAF4YKR036C THI11P47183 340 aa6.41□□□□□ -1.38
CAF4YKR036C THI13Q07748 340 aa6.41□□□□□ -1.38
CAF4YKR036C PRS1P32895 427 aaKnown RBP6.4□□□□□ -1.38
CAF4YKR036C TYS1P36421 394 aaKnown RBP6.4□□□□□ -1.39
CAF4YKR036C TFA1P36100 482 aa6.38□□□□□ -1.39
CAF4YKR036C TY1B-NL2Q99337 1749 aaKnown RBP6.38□□□□□ -1.39
CAF4YKR036C IML1P47170 1584 aa6.38□□□□□ -1.39
CAF4YKR036C NUP188P52593 1655 aaKnown RBP6.37□□□□□ -1.39
CAF4YKR036C SEC3P33332 1336 aaKnown RBP6.35□□□□□ -1.39
CAF4YKR036C VMR1P38735 1592 aa6.35□□□□□ -1.39
CAF4YKR036C SSM4P40318 1319 aa6.34□□□□□ -1.4
CAF4YKR036C TCB2P48231 1178 aa6.33□□□□□ -1.4
CAF4YKR036C IME2P32581 645 aa6.32□□□□□ -1.4
CAF4YKR036C CLC1P17891 233 aa6.31□□□□□ -1.4
CAF4YKR036C PDR5P33302 1511 aaKnown RBP6.3□□□□□ -1.4
CAF4YKR036C YAH1Q12184 172 aaKnown RBP6.3□□□□□ -1.4
CAF4YKR036C GLN1P32288 370 aaKnown RBP6.25□□□□□ -1.41
CAF4YKR036C OPY1P38271 328 aa6.25□□□□□ -1.41
CAF4YKR036C MRX12P47084 519 aa6.25□□□□□ -1.41
CAF4YKR036C RIA1P53893 1110 aa6.23□□□□□ -1.41
CAF4YKR036C PTP3P40048 928 aa6.23□□□□□ -1.41
CAF4YKR036C KRE5P22023 1365 aa6.22□□□□□ -1.41
CAF4YKR036C CFT1Q06632 1357 aaKnown RBP6.22□□□□□ -1.41
CAF4YKR036C APP1P53933 587 aa6.22□□□□□ -1.41
CAF4YKR036C YIL055CP40523 627 aaKnown RBP6.21□□□□□ -1.41
CAF4YKR036C PDR11P40550 1411 aa6.21□□□□□ -1.42
CAF4YKR036C YNR029CP53729 429 aaKnown RBP6.21□□□□□ -1.42
CAF4YKR036C YFR016CP43597 1233 aaKnown RBP6.2□□□□□ -1.42
CAF4YKR036C AVT3P36062 692 aa6.19□□□□□ -1.42
Retrieved 100 of 5,963 RNA–protein pairs in 17.4 ms