RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeastyeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC9YDL164C RRN6P32786 894 aa6.1□□□□□ -1.43
CDC9YDL164C BDF1P35817 686 aa6.1□□□□□ -1.43
CDC9YDL164C MRM1P25270 412 aa6.08□□□□□ -1.44
CDC9YDL164C TOP1P04786 769 aa6.08□□□□□ -1.44
CDC9YDL164C SPC42P36094 363 aa6.08□□□□□ -1.44
CDC9YDL164C OCA5P38738 679 aa6.07□□□□□ -1.44
CDC9YDL164C SNU71P53207 620 aaKnown RBP6.07□□□□□ -1.44
CDC9YDL164C HGH1P48362 394 aaKnown RBP6.06□□□□□ -1.44
CDC9YDL164C NOP7P53261 605 aaKnown RBP6.06□□□□□ -1.44
CDC9YDL164C FAR11P53917 953 aa6.06□□□□□ -1.44
CDC9YDL164C COQ8P27697 501 aa6.05□□□□□ -1.44
CDC9YDL164C SSF1P38789 453 aaPredicted RBP6.05□□□□□ -1.44
CDC9YDL164C CPS1P27614 576 aa6.04□□□□□ -1.44
CDC9YDL164C KTR1P27810 393 aaKnown RBP6.04□□□□□ -1.44
CDC9YDL164C MAK21Q12176 1025 aaKnown RBP6.04□□□□□ -1.44
CDC9YDL164C YTA7P40340 1379 aa6.04□□□□□ -1.44
CDC9YDL164C TIF1P10081 395 aaKnown RBP6.04□□□□□ -1.44
CDC9YDL164C REF2P42073 533 aaPredicted RBP6.04□□□□□ -1.44
CDC9YDL164C YJL007CP47080 104 aa6.04□□□□□ -1.44
CDC9YDL164C COX6P00427 148 aa6.02□□□□□ -1.44
CDC9YDL164C SWE1P32944 819 aa6.02□□□□□ -1.44
CDC9YDL164C MET10P39692 1035 aa6.02□□□□□ -1.44
CDC9YDL164C YML083CQ04526 418 aa6.02□□□□□ -1.44
CDC9YDL164C EDS1P38073 919 aa6.02□□□□□ -1.45
CDC9YDL164C SLX5P32828 619 aaKnown RBP6.01□□□□□ -1.45
CDC9YDL164C VPS29P38759 282 aa6.01□□□□□ -1.45
CDC9YDL164C TTI1P36097 1038 aa6□□□□□ -1.45
CDC9YDL164C ALD2P47771 506 aa6□□□□□ -1.45
CDC9YDL164C DOS2P54858 310 aa6□□□□□ -1.45
CDC9YDL164C SSA4P22202 642 aaKnown RBP5.99□□□□□ -1.45
CDC9YDL164C RTG3P38165 486 aa5.99□□□□□ -1.45
CDC9YDL164C YDR090CQ03193 310 aa5.99□□□□□ -1.45
CDC9YDL164C BRL1P38770 471 aa5.99□□□□□ -1.45
CDC9YDL164C ATF2P53296 535 aa5.99□□□□□ -1.45
CDC9YDL164C BIO2P32451 375 aa5.97□□□□□ -1.45
CDC9YDL164C RRP15Q06511 250 aaPredicted RBP5.97□□□□□ -1.45
CDC9YDL164C BRN1P38170 754 aa5.97□□□□□ -1.45
CDC9YDL164C IPL1P38991 367 aa5.97□□□□□ -1.45
CDC9YDL164C PUP1P25043 261 aa5.96□□□□□ -1.45
CDC9YDL164C HEM3P28789 327 aa5.96□□□□□ -1.45
CDC9YDL164C ALD4P46367 519 aaKnown RBP5.95□□□□□ -1.46
CDC9YDL164C HAT1Q12341 374 aa5.95□□□□□ -1.46
CDC9YDL164C CDC3P32457 520 aaKnown RBP5.94□□□□□ -1.46
CDC9YDL164C CSN12P47130 423 aa5.94□□□□□ -1.46
CDC9YDL164C SLD2P34252 453 aa5.94□□□□□ -1.46
CDC9YDL164C NUG1P40010 520 aaKnown RBP5.93□□□□□ -1.46
CDC9YDL164C ATE1P16639 503 aa5.92□□□□□ -1.46
CDC9YDL164C UBP14P38237 781 aaKnown RBP5.92□□□□□ -1.46
CDC9YDL164C JSN1P47135 1091 aaKnown RBP RIP-Chip data5.92□□□□□ -1.46not detected
CDC9YDL164C STS1P38637 319 aa5.91□□□□□ -1.46
CDC9YDL164C YJR008WP47085 338 aa5.91□□□□□ -1.46
CDC9YDL164C TYW1Q08960 810 aaKnown RBP5.91□□□□□ -1.46
CDC9YDL164C TPO2P53283 614 aa5.9□□□□□ -1.46
CDC9YDL164C NOP53Q12080 455 aaKnown RBP5.9□□□□□ -1.46
CDC9YDL164C RTG2P32608 588 aaKnown RBP5.9□□□□□ -1.47
CDC9YDL164C CST6P40535 587 aa5.9□□□□□ -1.47
CDC9YDL164C YPR204WQ08995 1032 aa5.9□□□□□ -1.47
CDC9YDL164C TIF4632P39936 914 aaKnown RBP5.89□□□□□ -1.47
CDC9YDL164C MAG2Q06436 670 aaKnown RBP5.89□□□□□ -1.47
CDC9YDL164C SSA2P10592 639 aaKnown RBP5.88□□□□□ -1.47
CDC9YDL164C RPL34AP87262 121 aaPredicted RBP5.88□□□□□ -1.47
CDC9YDL164C TGL3P40308 642 aa5.87□□□□□ -1.47
CDC9YDL164C SUP45P12385 437 aaKnown RBP5.86□□□□□ -1.47
CDC9YDL164C YNL108CP53929 270 aa5.86□□□□□ -1.47
CDC9YDL164C WHI5Q12416 295 aa5.86□□□□□ -1.47
CDC9YDL164C MRX10Q05648 414 aa5.85□□□□□ -1.47
CDC9YDL164C MIF2P35201 549 aa5.85□□□□□ -1.47
CDC9YDL164C TPS3P38426 1054 aaKnown RBP5.85□□□□□ -1.47
CDC9YDL164C YRB30P53107 440 aaPredicted RBP5.85□□□□□ -1.47
CDC9YDL164C YAF9P53930 226 aa5.85□□□□□ -1.47
CDC9YDL164C YLR326WQ06170 240 aaKnown RBP5.85□□□□□ -1.47
CDC9YDL164C STB3Q12427 513 aa5.85□□□□□ -1.47
CDC9YDL164C TRL1P09880 827 aaKnown RBP5.84□□□□□ -1.47
CDC9YDL164C NSR1P27476 414 aaKnown RBP RIP-Chip data5.84□□□□□ -1.47not detected
CDC9YDL164C VHR2P40041 505 aa5.83□□□□□ -1.48
CDC9YDL164C ENO1P00924 437 aaKnown RBP5.83□□□□□ -1.48
CDC9YDL164C KEX1P09620 729 aa5.82□□□□□ -1.48
CDC9YDL164C YDJ1P25491 409 aaKnown RBP5.82□□□□□ -1.48
CDC9YDL164C PTC3P34221 468 aaKnown RBP5.82□□□□□ -1.48
CDC9YDL164C RTS3P53289 263 aa5.82□□□□□ -1.48
CDC9YDL164C ITT1Q04638 464 aa5.82□□□□□ -1.48
CDC9YDL164C UBX5Q06682 500 aa5.82□□□□□ -1.48
CDC9YDL164C ERP5P38819 212 aa5.81□□□□□ -1.48
CDC9YDL164C ENO2P00925 437 aaKnown RBP5.81□□□□□ -1.48
CDC9YDL164C PSE1P32337 1089 aaKnown RBP5.81□□□□□ -1.48
CDC9YDL164C YMR1P47147 688 aaKnown RBP RIP-Chip data5.81□□□□□ -1.48not detected
CDC9YDL164C RNH70P53331 553 aa5.8□□□□□ -1.48
CDC9YDL164C MSC6Q08818 692 aaKnown RBP5.8□□□□□ -1.48
CDC9YDL164C YBL113CQ7M4S9 792 aa5.8□□□□□ -1.48
CDC9YDL164C TGL4P36165 910 aa5.79□□□□□ -1.48
CDC9YDL164C RDS2P19541 446 aaKnown RBP5.79□□□□□ -1.48
CDC9YDL164C YBL036CP38197 257 aa5.79□□□□□ -1.48
CDC9YDL164C MDJ2P42834 146 aa5.79□□□□□ -1.48
CDC9YDL164C IOC3P43596 787 aa5.79□□□□□ -1.48
CDC9YDL164C BUD21Q08492 214 aaPredicted RBP5.79□□□□□ -1.48
CDC9YDL164C PCS60P38137 543 aaKnown RBP RIP-Chip data5.78□□□□□ -1.48not detected
CDC9YDL164C PEP12P32854 288 aa5.77□□□□□ -1.49
CDC9YDL164C NMD2P38798 1089 aaKnown RBP5.77□□□□□ -1.49
CDC9YDL164C YFR006WP43590 535 aa5.77□□□□□ -1.49
CDC9YDL164C RIM21P48565 533 aa5.77□□□□□ -1.49
Retrieved 100 of 5,963 RNA–protein pairs in 27.6 ms