RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 EIF5BO60841 1220 aaKnown RBP18.75■□□□□ 0.59
CPSF1-212ENST00000616140 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.75■□□□□ 0.59
CPSF1-212ENST00000616140 ESF1Q9H501 851 aaKnown RBP18.73■□□□□ 0.59
CPSF1-212ENST00000616140 SENP3-EIF4A1A0A087X0R7 540 aa18.73■□□□□ 0.59
CPSF1-212ENST00000616140 CHMP7Q8WUX9 453 aaPredicted RBP18.72■□□□□ 0.59
CPSF1-212ENST00000616140 NPM1P06748 294 aaKnown RBP eCLIP18.7■□□□□ 0.58
CPSF1-212ENST00000616140 SIN3AQ96ST3 1273 aa18.7■□□□□ 0.58
CPSF1-212ENST00000616140 CEP164Q9UPV0 1460 aa18.68■□□□□ 0.58
CPSF1-212ENST00000616140 SUPT16HQ9Y5B9 1047 aaKnown RBP18.67■□□□□ 0.58
CPSF1-212ENST00000616140 RGL3Q3MIN7 710 aa18.66■□□□□ 0.58
CPSF1-212ENST00000616140 ANP32BQ92688 251 aaKnown RBP18.65■□□□□ 0.58
CPSF1-212ENST00000616140 KIF27Q86VH2 1401 aa18.65■□□□□ 0.58
CPSF1-212ENST00000616140 RB1CC1Q8TDY2 1594 aa18.62■□□□□ 0.57
CPSF1-212ENST00000616140 ARXQ96QS3 562 aa18.61■□□□□ 0.57
CPSF1-212ENST00000616140 CECR2Q9BXF3 1484 aa18.6■□□□□ 0.57
CPSF1-212ENST00000616140 PLEKHD1A6NEE1 506 aa18.6■□□□□ 0.57
CPSF1-212ENST00000616140 PLPPR3Q6T4P5 718 aa18.59■□□□□ 0.57
CPSF1-212ENST00000616140 BAZ1BQ9UIG0 1483 aaKnown RBP18.58■□□□□ 0.57
CPSF1-212ENST00000616140 KCNH8Q96L42 1107 aa18.58■□□□□ 0.56
CPSF1-212ENST00000616140 CFDP1Q9UEE9 299 aaPredicted RBP18.58■□□□□ 0.56
CPSF1-212ENST00000616140 SOGA1O94964 1423 aa18.56■□□□□ 0.56
CPSF1-212ENST00000616140 SENP3Q9H4L4 574 aaPredicted RBP18.54■□□□□ 0.56
CPSF1-212ENST00000616140 CCNB3Q8WWL7 1395 aa18.53■□□□□ 0.56
CPSF1-212ENST00000616140 CARD11Q9BXL7 1154 aa18.53■□□□□ 0.56
CPSF1-212ENST00000616140 NACADO15069 1562 aa18.51■□□□□ 0.55
CPSF1-212ENST00000616140 ANP32EQ9BTT0 268 aa18.49■□□□□ 0.55
CPSF1-212ENST00000616140 BAZ1AQ9NRL2 1556 aaPredicted RBP18.47■□□□□ 0.55
CPSF1-212ENST00000616140 KNSTRNQ9Y448 316 aa18.46■□□□□ 0.55
CPSF1-212ENST00000616140 PPP4R2Q9NY27 417 aa18.45■□□□□ 0.54
CPSF1-212ENST00000616140 KANK4Q5T7N3 995 aaPredicted RBP18.41■□□□□ 0.54
CPSF1-212ENST00000616140 B4GALNT3Q6L9W6 998 aa18.41■□□□□ 0.54
CPSF1-212ENST00000616140 MYH16Q9H6N6 1097 aa18.41■□□□□ 0.54
CPSF1-212ENST00000616140 DDRGK1Q96HY6 314 aa18.4■□□□□ 0.54
CPSF1-212ENST00000616140 CDCA8Q53HL2 280 aa18.4■□□□□ 0.54
CPSF1-212ENST00000616140 NEUROD2Q15784 382 aa18.39■□□□□ 0.53
CPSF1-212ENST00000616140 TIMELESSQ9UNS1 1208 aa18.39■□□□□ 0.53
CPSF1-212ENST00000616140 VPS8Q8N3P4 1428 aa18.38■□□□□ 0.53
CPSF1-212ENST00000616140 CARMIL1Q5VZK9 1371 aa18.38■□□□□ 0.53
CPSF1-212ENST00000616140 BECN1Q14457 450 aa18.38■□□□□ 0.53
CPSF1-212ENST00000616140 FHAD1B1AJZ9 1412 aa18.38■□□□□ 0.53
CPSF1-212ENST00000616140 CFAP53Q96M91 514 aa18.35■□□□□ 0.53
CPSF1-212ENST00000616140 RGS3P49796 1198 aa18.33■□□□□ 0.52
CPSF1-212ENST00000616140 CUX2O14529 1486 aa18.33■□□□□ 0.52
CPSF1-212ENST00000616140 CCDC88BA6NC98 1476 aa18.32■□□□□ 0.52
CPSF1-212ENST00000616140 PPP1R15AO75807 674 aaPredicted RBP18.32■□□□□ 0.52
CPSF1-212ENST00000616140 PPM1GO15355 546 aaPredicted RBP18.31■□□□□ 0.52
CPSF1-212ENST00000616140 CC2D1BQ5T0F9 858 aaKnown RBP18.31■□□□□ 0.52
CPSF1-212ENST00000616140 MROH2BQ7Z745 1585 aa18.31■□□□□ 0.52
CPSF1-212ENST00000616140 CCER2I3L3R5 266 aa18.31■□□□□ 0.52
CPSF1-212ENST00000616140 DCAF11Q8TEB1 546 aa18.3■□□□□ 0.52
CPSF1-212ENST00000616140 SETD5Q9C0A6 1442 aa18.3■□□□□ 0.52
CPSF1-212ENST00000616140 ABCC8Q09428 1581 aa18.29■□□□□ 0.52
CPSF1-212ENST00000616140 LAS1LQ9Y4W2 734 aaKnown RBP18.29■□□□□ 0.52
CPSF1-212ENST00000616140 PLEKHG5O94827 1062 aa18.28■□□□□ 0.52
CPSF1-212ENST00000616140 HSPA5P11021 654 aaKnown RBP18.27■□□□□ 0.52
CPSF1-212ENST00000616140 TNNT2P45379 298 aaPredicted RBP18.27■□□□□ 0.52
CPSF1-212ENST00000616140 FTSJ3Q8IY81 847 aaKnown RBP18.27■□□□□ 0.52
CPSF1-212ENST00000616140 FRAT1Q92837 279 aaPredicted RBP18.27■□□□□ 0.52
CPSF1-212ENST00000616140 GLIPR1L2Q4G1C9 344 aa18.26■□□□□ 0.51
CPSF1-212ENST00000616140 NOP58Q9Y2X3 529 aaKnown RBP18.25■□□□□ 0.51
CPSF1-212ENST00000616140 FOXD1Q16676 465 aa18.24■□□□□ 0.51
CPSF1-212ENST00000616140 C14orf37Q86TY3 774 aa18.23■□□□□ 0.51
CPSF1-212ENST00000616140 RAB3GAP2Q9H2M9 1393 aa18.23■□□□□ 0.51
CPSF1-212ENST00000616140 RBM19Q9Y4C8 960 aaKnown RBP18.23■□□□□ 0.51
CPSF1-212ENST00000616140 ZBTB7CA1YPR0 619 aa18.21■□□□□ 0.51
CPSF1-212ENST00000616140 TRIM44Q96DX7 344 aaPredicted RBP18.21■□□□□ 0.51
CPSF1-212ENST00000616140 GOLGA6L22H0YM25 854 aa18.2■□□□□ 0.5
CPSF1-212ENST00000616140 MAPK8IP3Q9UPT6 1336 aa18.2■□□□□ 0.5
CPSF1-212ENST00000616140 TMF1P82094 1093 aa18.19■□□□□ 0.5
CPSF1-212ENST00000616140 NUDCQ9Y266 331 aa18.19■□□□□ 0.5
CPSF1-212ENST00000616140 PKD2Q13563 968 aa18.17■□□□□ 0.5
CPSF1-212ENST00000616140 ARHGAP35Q9NRY4 1499 aa18.16■□□□□ 0.5
CPSF1-212ENST00000616140 NCLP19338 710 aaKnown RBP18.16■□□□□ 0.5
CPSF1-212ENST00000616140 U2SURPO15042 1029 aaKnown RBP18.15■□□□□ 0.5
CPSF1-212ENST00000616140 POGKQ9P215 609 aa18.15■□□□□ 0.5
CPSF1-212ENST00000616140 RTN4Q9NQC3 1192 aaKnown RBP18.13■□□□□ 0.49
CPSF1-212ENST00000616140 EIF4G1Q04637 1599 aaKnown RBP18.13■□□□□ 0.49
CPSF1-212ENST00000616140 MPHOSPH9Q99550 1183 aa18.12■□□□□ 0.49
CPSF1-212ENST00000616140 A0A0G2JS52 829 aa18.1■□□□□ 0.49
CPSF1-212ENST00000616140 ERICH6BQ5W0A0 696 aa18.08■□□□□ 0.49
CPSF1-212ENST00000616140 TDRD9Q8NDG6 1382 aaKnown RBP18.07■□□□□ 0.48
CPSF1-212ENST00000616140 L3MBTL2Q969R5 705 aa18.06■□□□□ 0.48
CPSF1-212ENST00000616140 TSHZ2Q9NRE2 1034 aa18.06■□□□□ 0.48
CPSF1-212ENST00000616140 ARID4BQ4LE39 1312 aaPredicted RBP18.05■□□□□ 0.48
CPSF1-212ENST00000616140 CASC1Q6TDU7 716 aa18.05■□□□□ 0.48
CPSF1-212ENST00000616140 TPRNQ4KMQ1 711 aa18.05■□□□□ 0.48
CPSF1-212ENST00000616140 MS4A1P11836 297 aa18.04■□□□□ 0.48
CPSF1-212ENST00000616140 RCAN3Q9UKA8 241 aa18.03■□□□□ 0.48
CPSF1-212ENST00000616140 SAFB2Q14151 953 aaKnown RBP eCLIP18.02■□□□□ 0.48
CPSF1-212ENST00000616140 MORC1Q86VD1 984 aa18.02■□□□□ 0.48
CPSF1-212ENST00000616140 PTMAP06454 111 aaKnown RBP18.02■□□□□ 0.48
CPSF1-212ENST00000616140 ERCC6Q03468 1493 aa18.02■□□□□ 0.47
CPSF1-212ENST00000616140 KTN1Q86UP2 1357 aaKnown RBP18.02■□□□□ 0.47
CPSF1-212ENST00000616140 FMN1Q68DA7 1419 aa18.02■□□□□ 0.47
CPSF1-212ENST00000616140 NUP155O75694 1391 aa18.02■□□□□ 0.47
CPSF1-212ENST00000616140 DEKP35659 375 aaKnown RBP18.01■□□□□ 0.47
CPSF1-212ENST00000616140 SRPK2P78362 688 aaKnown RBP18■□□□□ 0.47
CPSF1-212ENST00000616140 RAPGEF2Q9Y4G8 1499 aa17.99■□□□□ 0.47
CPSF1-212ENST00000616140 CHMP4BQ9H444 224 aaKnown RBP17.99■□□□□ 0.47
CPSF1-212ENST00000616140 HSP90AB1P08238 724 aaKnown RBP17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms