RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 CASC1Q6TDU7 716 aa11.41□□□□□ -0.58
TTC28-208ENST00000612946 TNNT3P45378 269 aaPredicted RBP11.4□□□□□ -0.58
TTC28-208ENST00000612946 ZRSR1Q15695 479 aaKnown RBP11.4□□□□□ -0.58
TTC28-208ENST00000612946 CALRP27797 417 aaKnown RBP11.39□□□□□ -0.59
TTC28-208ENST00000612946 CHMP4BQ9H444 224 aaKnown RBP11.39□□□□□ -0.59
TTC28-208ENST00000612946 EEA1Q15075 1411 aa11.38□□□□□ -0.59
TTC28-208ENST00000612946 MTERF4Q7Z6M4 381 aaKnown RBP11.38□□□□□ -0.59
TTC28-208ENST00000612946 TMC1Q8TDI8 760 aa11.38□□□□□ -0.59
TTC28-208ENST00000612946 A0A0U1RQG5 324 aaPredicted RBP11.37□□□□□ -0.59
TTC28-208ENST00000612946 MRS2Q9HD23 443 aa11.37□□□□□ -0.59
TTC28-208ENST00000612946 KIAA2012Q0VF49 1180 aa11.36□□□□□ -0.59
TTC28-208ENST00000612946 ARXQ96QS3 562 aa11.35□□□□□ -0.59
TTC28-208ENST00000612946 RBM19Q9Y4C8 960 aaKnown RBP11.35□□□□□ -0.59
TTC28-208ENST00000612946 MAP7D2Q96T17 732 aa11.34□□□□□ -0.59
TTC28-208ENST00000612946 GOLGA6L3A6NEY3 463 aa11.34□□□□□ -0.59
TTC28-208ENST00000612946 CCER2I3L3R5 266 aa11.33□□□□□ -0.6
TTC28-208ENST00000612946 CSRNP3Q8WYN3 585 aa11.33□□□□□ -0.6
TTC28-208ENST00000612946 RTN4Q9NQC3 1192 aaKnown RBP11.33□□□□□ -0.6
TTC28-208ENST00000612946 DDX10Q13206 875 aaKnown RBP11.32□□□□□ -0.6
TTC28-208ENST00000612946 GBP4Q96PP9 640 aa11.32□□□□□ -0.6
TTC28-208ENST00000612946 MS4A1P11836 297 aa11.32□□□□□ -0.6
TTC28-208ENST00000612946 WDR43Q15061 677 aaKnown RBP eCLIP11.31□□□□□ -0.6
TTC28-208ENST00000612946 FAM9BQ8IZU0 186 aa11.31□□□□□ -0.6
TTC28-208ENST00000612946 SETQ01105 290 aaPredicted RBP11.3□□□□□ -0.6
TTC28-208ENST00000612946 SYAP1Q96A49 352 aaPredicted RBP11.3□□□□□ -0.6
TTC28-208ENST00000612946 FANCIQ9NVI1 1328 aa11.29□□□□□ -0.6
TTC28-208ENST00000612946 HSCBQ8IWL3 235 aa11.29□□□□□ -0.6
TTC28-208ENST00000612946 TCERG1O14776 1098 aaKnown RBP11.27□□□□□ -0.61
TTC28-208ENST00000612946 IPO9Q96P70 1041 aaKnown RBP11.27□□□□□ -0.61
TTC28-208ENST00000612946 PKNOX2Q96KN3 472 aa11.26□□□□□ -0.61
TTC28-208ENST00000612946 GOLGA6L1Q8N7Z2 621 aa11.26□□□□□ -0.61
TTC28-208ENST00000612946 TIMELESSQ9UNS1 1208 aa11.26□□□□□ -0.61
TTC28-208ENST00000612946 PHF14O94880 888 aa11.24□□□□□ -0.61
TTC28-208ENST00000612946 TAF3Q5VWG9 929 aa11.24□□□□□ -0.61
TTC28-208ENST00000612946 EIF4G2P78344 907 aaKnown RBP eCLIP11.23□□□□□ -0.61
TTC28-208ENST00000612946 HSP90AB1P08238 724 aaKnown RBP11.21□□□□□ -0.61
TTC28-208ENST00000612946 CSPP1Q1MSJ5 1256 aa11.21□□□□□ -0.61
TTC28-208ENST00000612946 DDX11L8A8MPP1 907 aa11.21□□□□□ -0.61
TTC28-208ENST00000612946 VSIG10Q8N0Z9 540 aa11.21□□□□□ -0.62
TTC28-208ENST00000612946 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.2□□□□□ -0.62
TTC28-208ENST00000612946 NOM1Q5C9Z4 860 aaKnown RBP11.19□□□□□ -0.62
TTC28-208ENST00000612946 HTATSF1O43719 755 aaKnown RBP11.19□□□□□ -0.62
TTC28-208ENST00000612946 GOLGA3Q08378 1498 aa11.19□□□□□ -0.62
TTC28-208ENST00000612946 TSHZ2Q9NRE2 1034 aa11.18□□□□□ -0.62
TTC28-208ENST00000612946 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.18□□□□□ -0.62
TTC28-208ENST00000612946 PRKCSHP14314 528 aaPredicted RBP11.18□□□□□ -0.62
TTC28-208ENST00000612946 CDCA8Q53HL2 280 aa11.18□□□□□ -0.62
TTC28-208ENST00000612946 CLIP1P30622 1438 aa11.17□□□□□ -0.62
TTC28-208ENST00000612946 SKOR2Q2VWA4 1001 aaPredicted RBP11.16□□□□□ -0.62
TTC28-208ENST00000612946 TPM2P07951 284 aa11.15□□□□□ -0.62
TTC28-208ENST00000612946 PODXL2Q9NZ53 605 aa11.15□□□□□ -0.62
TTC28-208ENST00000612946 GSE1Q14687 1217 aa11.15□□□□□ -0.63
TTC28-208ENST00000612946 MCCP23508 829 aa11.14□□□□□ -0.63
TTC28-208ENST00000612946 GPS2Q13227 327 aa11.14□□□□□ -0.63
TTC28-208ENST00000612946 FTSJ3Q8IY81 847 aaKnown RBP11.14□□□□□ -0.63
TTC28-208ENST00000612946 CCDC66A2RUB6 948 aa11.14□□□□□ -0.63
TTC28-208ENST00000612946 TEX35Q5T0J7 233 aa11.14□□□□□ -0.63
TTC28-208ENST00000612946 GOLGA6L4A6NEF3 574 aa11.12□□□□□ -0.63
TTC28-208ENST00000612946 RRP9O43818 475 aaKnown RBP11.12□□□□□ -0.63
TTC28-208ENST00000612946 IRX6P78412 446 aaPredicted RBP11.12□□□□□ -0.63
TTC28-208ENST00000612946 RSF1Q96T23 1441 aaPredicted RBP11.12□□□□□ -0.63
TTC28-208ENST00000612946 ZCCHC6Q5VYS8 1495 aaKnown RBP11.11□□□□□ -0.63
TTC28-208ENST00000612946 CWC15Q9P013 229 aaKnown RBP11.11□□□□□ -0.63
TTC28-208ENST00000612946 PHLDB1Q86UU1 1377 aa11.1□□□□□ -0.63
TTC28-208ENST00000612946 CEP162Q5TB80 1403 aa11.1□□□□□ -0.63
TTC28-208ENST00000612946 DRC7Q8IY82 874 aa11.1□□□□□ -0.63
TTC28-208ENST00000612946 APPP05067 770 aa11.09□□□□□ -0.63
TTC28-208ENST00000612946 TPM4P67936 248 aa11.09□□□□□ -0.63
TTC28-208ENST00000612946 ISY1Q9ULR0 285 aaKnown RBP11.08□□□□□ -0.64
TTC28-208ENST00000612946 CFAP53Q96M91 514 aa11.08□□□□□ -0.64
TTC28-208ENST00000612946 TSPYL1Q9H0U9 437 aa11.06□□□□□ -0.64
TTC28-208ENST00000612946 CEP164Q9UPV0 1460 aa11.06□□□□□ -0.64
TTC28-208ENST00000612946 MYO15BQ96JP2 1530 aa11.06□□□□□ -0.64
TTC28-208ENST00000612946 CCDC34Q96HJ3 373 aa11.06□□□□□ -0.64
TTC28-208ENST00000612946 ZNF771Q7L3S4 317 aaPredicted RBP11.05□□□□□ -0.64
TTC28-208ENST00000612946 HAP1P54257 671 aaPredicted RBP11.05□□□□□ -0.64
TTC28-208ENST00000612946 FAM43AQ8N2R8 423 aa11.05□□□□□ -0.64
TTC28-208ENST00000612946 KIF16BQ96L93 1317 aa11.04□□□□□ -0.64
TTC28-208ENST00000612946 TNIKQ9UKE5 1360 aa11.03□□□□□ -0.64
TTC28-208ENST00000612946 CALD1Q05682 793 aaKnown RBP11.03□□□□□ -0.64
TTC28-208ENST00000612946 HMGN5P82970 282 aaKnown RBP11.03□□□□□ -0.64
TTC28-208ENST00000612946 B4GALNT3Q6L9W6 998 aa11.02□□□□□ -0.65
TTC28-208ENST00000612946 MAPK8IP3Q9UPT6 1336 aa11.01□□□□□ -0.65
TTC28-208ENST00000612946 PDE3BQ13370 1112 aa11.01□□□□□ -0.65
TTC28-208ENST00000612946 PLCB2Q00722 1185 aa11□□□□□ -0.65
TTC28-208ENST00000612946 RGS3P49796 1198 aa11□□□□□ -0.65
TTC28-208ENST00000612946 UBE2Q2Q8WVN8 375 aa11□□□□□ -0.65
TTC28-208ENST00000612946 ROCK2O75116 1388 aaKnown RBP10.99□□□□□ -0.65
TTC28-208ENST00000612946 AMER1Q5JTC6 1135 aaPredicted RBP10.99□□□□□ -0.65
TTC28-208ENST00000612946 KNSTRNQ9Y448 316 aa10.99□□□□□ -0.65
TTC28-208ENST00000612946 TPM3P06753 285 aa10.99□□□□□ -0.65
TTC28-208ENST00000612946 ACBD3Q9H3P7 528 aa10.99□□□□□ -0.65
TTC28-208ENST00000612946 CCDC70Q6NSX1 233 aa10.99□□□□□ -0.65
TTC28-208ENST00000612946 ARGLU1Q9NWB6 273 aaPredicted RBP10.99□□□□□ -0.65
TTC28-208ENST00000612946 NOC3LQ8WTT2 800 aaKnown RBP10.98□□□□□ -0.65
TTC28-208ENST00000612946 ATP6V1DQ9Y5K8 247 aa10.97□□□□□ -0.65
TTC28-208ENST00000612946 MTUS2Q5JR59 1369 aa10.97□□□□□ -0.65
TTC28-208ENST00000612946 RWDD1Q9H446 243 aaPredicted RBP10.96□□□□□ -0.65
TTC28-208ENST00000612946 CHMP4CQ96CF2 233 aa10.96□□□□□ -0.65
TTC28-208ENST00000612946 RB1CC1Q8TDY2 1594 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms