RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 HAX1O00165 279 aa15□□□□□ -0.01
NUP88-213ENST00000576862 EVX2Q03828 476 aa14.98□□□□□ -0.01
NUP88-213ENST00000576862 CCDC61Q9Y6R9 512 aa14.98□□□□□ -0.01
NUP88-213ENST00000576862 PAK3O75914 559 aaPredicted RBP14.97□□□□□ -0.01
NUP88-213ENST00000576862 ZRANB1Q9UGI0 708 aa14.97□□□□□ -0.01
NUP88-213ENST00000576862 ECM2O94769 699 aaPredicted RBP14.91□□□□□ -0.02
NUP88-213ENST00000576862 PYGBP11216 843 aa14.9□□□□□ -0.02
NUP88-213ENST00000576862 TRIM41Q8WV44 630 aa14.89□□□□□ -0.03
NUP88-213ENST00000576862 CHRM1P11229 460 aaPredicted RBP14.87□□□□□ -0.03
NUP88-213ENST00000576862 ZNF579Q8NAF0 562 aaKnown RBP14.87□□□□□ -0.03
NUP88-213ENST00000576862 PHF12Q96QT6 1004 aa14.86□□□□□ -0.03
NUP88-213ENST00000576862 KIF12Q96FN5 646 aa14.83□□□□□ -0.04
NUP88-213ENST00000576862 RGL2O15211 777 aa14.81□□□□□ -0.04
NUP88-213ENST00000576862 RNF25Q96BH1 459 aaPredicted RBP14.8□□□□□ -0.04
NUP88-213ENST00000576862 MAP3K13O43283 966 aa14.78□□□□□ -0.04
NUP88-213ENST00000576862 SGIP1Q9BQI5 828 aa14.72□□□□□ -0.05
NUP88-213ENST00000576862 PCDHB13Q9Y5F0 798 aa14.72□□□□□ -0.05
NUP88-213ENST00000576862 IFNL1Q8IU54 200 aa14.7□□□□□ -0.06
NUP88-213ENST00000576862 PCDHB8Q9UN66 801 aa14.7□□□□□ -0.06
NUP88-213ENST00000576862 RIOK3O14730 519 aaKnown RBP14.69□□□□□ -0.06
NUP88-213ENST00000576862 MS4A3Q96HJ5 214 aa14.69□□□□□ -0.06
NUP88-213ENST00000576862 ZNF467Q7Z7K2 595 aaPredicted RBP14.66□□□□□ -0.06
NUP88-213ENST00000576862 GALR2O43603 387 aaPredicted RBP14.65□□□□□ -0.06
NUP88-213ENST00000576862 GABBR2O75899 941 aa14.64□□□□□ -0.07
NUP88-213ENST00000576862 CLCN6P51797 869 aa14.64□□□□□ -0.07
NUP88-213ENST00000576862 SP7Q8TDD2 431 aaPredicted RBP14.64□□□□□ -0.07
NUP88-213ENST00000576862 TRPC6Q9Y210 931 aa14.61□□□□□ -0.07
NUP88-213ENST00000576862 VGFO15240 615 aaPredicted RBP14.59□□□□□ -0.07
NUP88-213ENST00000576862 DCAF8L2P0C7V8 631 aa14.59□□□□□ -0.07
NUP88-213ENST00000576862 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.55□□□□□ -0.08
NUP88-213ENST00000576862 ZFP91Q96JP5 570 aaPredicted RBP14.55□□□□□ -0.08
NUP88-213ENST00000576862 PDAP1Q13442 181 aaKnown RBP14.54□□□□□ -0.08
NUP88-213ENST00000576862 PSEN1P49768 467 aa14.53□□□□□ -0.08
NUP88-213ENST00000576862 TAOK2Q9UL54 1235 aa14.52□□□□□ -0.09
NUP88-213ENST00000576862 CHGAP10645 457 aaKnown RBP14.48□□□□□ -0.09
NUP88-213ENST00000576862 TIE1P35590 1138 aa14.47□□□□□ -0.09
NUP88-213ENST00000576862 HS6ST3Q8IZP7 471 aa14.47□□□□□ -0.09
NUP88-213ENST00000576862 BMP2KQ9NSY1 1161 aaPredicted RBP14.47□□□□□ -0.09
NUP88-213ENST00000576862 STK25O00506 426 aa14.46□□□□□ -0.09
NUP88-213ENST00000576862 TMEM106CQ9BVX2 250 aa14.45□□□□□ -0.1
NUP88-213ENST00000576862 BCL11BQ9C0K0 894 aaPredicted RBP14.45□□□□□ -0.1
NUP88-213ENST00000576862 TTLL13PA6NNM8 815 aa14.44□□□□□ -0.1
NUP88-213ENST00000576862 STK24Q9Y6E0 443 aa14.42□□□□□ -0.1
NUP88-213ENST00000576862 ATMINO43313 823 aaPredicted RBP14.4□□□□□ -0.1
NUP88-213ENST00000576862 ASTLQ6HA08 431 aaPredicted RBP14.4□□□□□ -0.1
NUP88-213ENST00000576862 POTEIP0CG38 1075 aa14.38□□□□□ -0.11
NUP88-213ENST00000576862 ATN1P54259 1190 aaPredicted RBP14.38□□□□□ -0.11
NUP88-213ENST00000576862 DNAJC5Q9H3Z4 198 aa14.37□□□□□ -0.11
NUP88-213ENST00000576862 DCBLD2Q96PD2 775 aa14.36□□□□□ -0.11
NUP88-213ENST00000576862 CABP2Q9NPB3 220 aa14.35□□□□□ -0.11
NUP88-213ENST00000576862 TRIM35Q9UPQ4 493 aa14.33□□□□□ -0.12
NUP88-213ENST00000576862 PELP1Q8IZL8 1130 aaKnown RBP14.32□□□□□ -0.12
NUP88-213ENST00000576862 NKX1-1Q15270 411 aaPredicted RBP14.31□□□□□ -0.12
NUP88-213ENST00000576862 BBXQ8WY36 941 aaPredicted RBP14.31□□□□□ -0.12
NUP88-213ENST00000576862 EFCAB3Q8N7B9 438 aa14.3□□□□□ -0.12
NUP88-213ENST00000576862 GOLGA2Q08379 1002 aa14.24□□□□□ -0.13
NUP88-213ENST00000576862 MKRN3Q13064 507 aaKnown RBP14.22□□□□□ -0.13
NUP88-213ENST00000576862 MFRPQ9BY79 579 aa14.21□□□□□ -0.13
NUP88-213ENST00000576862 SOX12O15370 315 aa14.2□□□□□ -0.14
NUP88-213ENST00000576862 IER5LQ5T953 404 aa14.18□□□□□ -0.14
NUP88-213ENST00000576862 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.18□□□□□ -0.14
NUP88-213ENST00000576862 PHF8Q9UPP1 1060 aa14.18□□□□□ -0.14
NUP88-213ENST00000576862 ILDR1Q86SU0 546 aaPredicted RBP14.17□□□□□ -0.14
NUP88-213ENST00000576862 GTPBP6O43824 516 aaPredicted RBP14.16□□□□□ -0.14
NUP88-213ENST00000576862 IRX5P78411 483 aaPredicted RBP14.16□□□□□ -0.14
NUP88-213ENST00000576862 FBXO22Q8NEZ5 403 aa14.16□□□□□ -0.14
NUP88-213ENST00000576862 SLC39A7Q92504 469 aa14.15□□□□□ -0.14
NUP88-213ENST00000576862 C7P10643 843 aa14.13□□□□□ -0.15
NUP88-213ENST00000576862 MS4A4AQ96JQ5 239 aa14.13□□□□□ -0.15
NUP88-213ENST00000576862 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.13□□□□□ -0.153e-6■■■□□ 18
NUP88-213ENST00000576862 POTEFA5A3E0 1075 aa14.12□□□□□ -0.15
NUP88-213ENST00000576862 NLRP6P59044 892 aa14.12□□□□□ -0.15
NUP88-213ENST00000576862 METRNQ9UJH8 293 aa14.12□□□□□ -0.15
NUP88-213ENST00000576862 PAXIP1Q6ZW49 1069 aaPredicted RBP14.11□□□□□ -0.15
NUP88-213ENST00000576862 COLQQ9Y215 455 aaPredicted RBP14.11□□□□□ -0.15
NUP88-213ENST00000576862 PDCD7Q8N8D1 485 aaKnown RBP14.1□□□□□ -0.15
NUP88-213ENST00000576862 SPRYD3Q8NCJ5 442 aa14.1□□□□□ -0.15
NUP88-213ENST00000576862 PLCB2Q00722 1185 aa14.08□□□□□ -0.16
NUP88-213ENST00000576862 CFAP44Q96MT7 982 aa14.08□□□□□ -0.16
NUP88-213ENST00000576862 OCEL1Q9H607 264 aa14.08□□□□□ -0.16
NUP88-213ENST00000576862 DPY19L2Q6NUT2 758 aa14.05□□□□□ -0.16
NUP88-213ENST00000576862 RYDENQ9NUL5 291 aaKnown RBP14.05□□□□□ -0.16
NUP88-213ENST00000576862 PPP1R37O75864 691 aa14.04□□□□□ -0.16
NUP88-213ENST00000576862 SEC24BO95487 1268 aa14.04□□□□□ -0.16
NUP88-213ENST00000576862 PLCG2P16885 1265 aa14.04□□□□□ -0.16
NUP88-213ENST00000576862 POTEB2H3BUK9 544 aa13.93□□□□□ -0.18
NUP88-213ENST00000576862 POTEJP0CG39 1038 aa13.9□□□□□ -0.18
NUP88-213ENST00000576862 TMEM121BQ9BXQ6 578 aaPredicted RBP13.89□□□□□ -0.19
NUP88-213ENST00000576862 BOLA1Q9Y3E2 137 aa13.89□□□□□ -0.19
NUP88-213ENST00000576862 MICALL2Q8IY33 904 aa13.88□□□□□ -0.19
NUP88-213ENST00000576862 TSHZ2Q9NRE2 1034 aa13.88□□□□□ -0.19
NUP88-213ENST00000576862 L3MBTL3Q96JM7 780 aaPredicted RBP13.87□□□□□ -0.19
NUP88-213ENST00000576862 HAP1P54257 671 aaPredicted RBP13.84□□□□□ -0.19
NUP88-213ENST00000576862 CADPS2Q86UW7 1296 aa13.83□□□□□ -0.2
NUP88-213ENST00000576862 G3V3G9 751 aa13.79□□□□□ -0.2
NUP88-213ENST00000576862 LHX8Q68G74 356 aa13.74□□□□□ -0.21
NUP88-213ENST00000576862 TMEM92Q6UXU6 159 aa13.73□□□□□ -0.21
NUP88-213ENST00000576862 NCKAP5LQ9HCH0 1330 aa13.72□□□□□ -0.21
NUP88-213ENST00000576862 C3orf67Q6ZVT6 689 aa13.72□□□□□ -0.21
NUP88-213ENST00000576862 SLC24A1O60721 1099 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms