RNA–Protein interactions for RNA: ENST00000570415.5

ITGAE-203, Transcript of integrin subunit alpha E, humanhuman

TSL 3

Gene ITGAE, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGAE-203ENST00000570415 HMGXB3Q12766 1538 aa19.3■□□□□ 0.68
ITGAE-203ENST00000570415 PIP4P2Q8N4L2 257 aa19.27■□□□□ 0.68
ITGAE-203ENST00000570415 SMARCA2P51531 1590 aa19.27■□□□□ 0.67
ITGAE-203ENST00000570415 PLEKHG5O94827 1062 aa19.26■□□□□ 0.67
ITGAE-203ENST00000570415 IFNLR1Q8IU57 520 aaPredicted RBP19.26■□□□□ 0.67
ITGAE-203ENST00000570415 CHADLQ6NUI6 762 aa19.24■□□□□ 0.67
ITGAE-203ENST00000570415 KIF21AQ7Z4S6 1674 aa19.21■□□□□ 0.67
ITGAE-203ENST00000570415 PRKAR2AP13861 404 aaKnown RBP19.21■□□□□ 0.67
ITGAE-203ENST00000570415 BAZ1BQ9UIG0 1483 aaKnown RBP19.18■□□□□ 0.66
ITGAE-203ENST00000570415 KLHL34Q8N239 644 aa19.15■□□□□ 0.66
ITGAE-203ENST00000570415 MNX1P50219 401 aaPredicted RBP19.13■□□□□ 0.65
ITGAE-203ENST00000570415 ZBTB47Q9UFB7 747 aaPredicted RBP19.13■□□□□ 0.65
ITGAE-203ENST00000570415 BAZ1AQ9NRL2 1556 aaPredicted RBP19.1■□□□□ 0.65
ITGAE-203ENST00000570415 LAMC3Q9Y6N6 1575 aa19.1■□□□□ 0.65
ITGAE-203ENST00000570415 PEG3Q9GZU2 1588 aa19.07■□□□□ 0.64
ITGAE-203ENST00000570415 MROH2BQ7Z745 1585 aa19.06■□□□□ 0.64
ITGAE-203ENST00000570415 TRIM41Q8WV44 630 aa19.04■□□□□ 0.64
ITGAE-203ENST00000570415 FARP1Q9Y4F1 1045 aaPredicted RBP19.04■□□□□ 0.64
ITGAE-203ENST00000570415 SPOCK2Q92563 424 aa19.01■□□□□ 0.63
ITGAE-203ENST00000570415 NPM1P06748 294 aaKnown RBP eCLIP18.97■□□□□ 0.63
ITGAE-203ENST00000570415 PDS5BQ9NTI5 1447 aa18.91■□□□□ 0.62
ITGAE-203ENST00000570415 NUBP1P53384 320 aa18.89■□□□□ 0.61
ITGAE-203ENST00000570415 MRC2Q9UBG0 1479 aa18.88■□□□□ 0.61
ITGAE-203ENST00000570415 WDR62O43379 1518 aa18.87■□□□□ 0.61
ITGAE-203ENST00000570415 WIZO95785 1651 aa18.85■□□□□ 0.61
ITGAE-203ENST00000570415 CADPSQ9ULU8 1353 aa18.81■□□□□ 0.6
ITGAE-203ENST00000570415 POTEHQ6S545 545 aa18.81■□□□□ 0.6
ITGAE-203ENST00000570415 RASEFQ8IZ41 740 aa18.81■□□□□ 0.6
ITGAE-203ENST00000570415 AMER1Q5JTC6 1135 aaPredicted RBP18.8■□□□□ 0.6
ITGAE-203ENST00000570415 RTN4Q9NQC3 1192 aaKnown RBP18.76■□□□□ 0.59
ITGAE-203ENST00000570415 FAM212AQ96EL1 285 aa18.73■□□□□ 0.59
ITGAE-203ENST00000570415 CEP164Q9UPV0 1460 aa18.72■□□□□ 0.59
ITGAE-203ENST00000570415 DCAF8Q5TAQ9 597 aa18.7■□□□□ 0.58
ITGAE-203ENST00000570415 CIZ1Q9ULV3 898 aaPredicted RBP18.7■□□□□ 0.58
ITGAE-203ENST00000570415 FANCD2Q9BXW9 1451 aa18.69■□□□□ 0.58
ITGAE-203ENST00000570415 GSE1Q14687 1217 aa18.68■□□□□ 0.58
ITGAE-203ENST00000570415 TSPYL2Q9H2G4 693 aaPredicted RBP18.67■□□□□ 0.58
ITGAE-203ENST00000570415 C19orf67A6NJJ6 358 aa18.66■□□□□ 0.58
ITGAE-203ENST00000570415 CD44P16070 742 aaKnown RBP18.66■□□□□ 0.58
ITGAE-203ENST00000570415 PKD2Q13563 968 aa18.64■□□□□ 0.57
ITGAE-203ENST00000570415 PAK3O75914 559 aaPredicted RBP18.63■□□□□ 0.57
ITGAE-203ENST00000570415 URB2Q14146 1524 aaKnown RBP18.63■□□□□ 0.57
ITGAE-203ENST00000570415 HAX1O00165 279 aa18.6■□□□□ 0.57
ITGAE-203ENST00000570415 RIMBP3CA6NJZ7 1639 aa18.58■□□□□ 0.56
ITGAE-203ENST00000570415 RIMBP3BA6NNM3 1639 aa18.58■□□□□ 0.56
ITGAE-203ENST00000570415 RIMBP3Q9UFD9 1639 aa18.58■□□□□ 0.56
ITGAE-203ENST00000570415 ZRANB1Q9UGI0 708 aa18.56■□□□□ 0.56
ITGAE-203ENST00000570415 CFTRP13569 1480 aa18.56■□□□□ 0.56
ITGAE-203ENST00000570415 CCDC61Q9Y6R9 512 aa18.54■□□□□ 0.56
ITGAE-203ENST00000570415 ECM2O94769 699 aaPredicted RBP18.51■□□□□ 0.55
ITGAE-203ENST00000570415 TOP2AP11388 1531 aaKnown RBP18.49■□□□□ 0.55
ITGAE-203ENST00000570415 EVX2Q03828 476 aa18.48■□□□□ 0.55
ITGAE-203ENST00000570415 ZNF608Q9ULD9 1512 aaPredicted RBP18.48■□□□□ 0.55
ITGAE-203ENST00000570415 PYGBP11216 843 aa18.47■□□□□ 0.55
ITGAE-203ENST00000570415 PRDM2Q13029 1718 aa18.46■□□□□ 0.55
ITGAE-203ENST00000570415 RSF1Q96T23 1441 aaPredicted RBP18.44■□□□□ 0.54
ITGAE-203ENST00000570415 ZNF579Q8NAF0 562 aaKnown RBP18.43■□□□□ 0.54
ITGAE-203ENST00000570415 ARHGEF11O15085 1522 aa18.42■□□□□ 0.54
ITGAE-203ENST00000570415 CHRM1P11229 460 aaPredicted RBP18.41■□□□□ 0.54
ITGAE-203ENST00000570415 PHF12Q96QT6 1004 aa18.41■□□□□ 0.54
ITGAE-203ENST00000570415 EIF4G3O43432 1585 aaKnown RBP18.37■□□□□ 0.53
ITGAE-203ENST00000570415 KIF12Q96FN5 646 aa18.35■□□□□ 0.53
ITGAE-203ENST00000570415 RGL2O15211 777 aa18.34■□□□□ 0.53
ITGAE-203ENST00000570415 CHD1O14646 1710 aa18.34■□□□□ 0.53
ITGAE-203ENST00000570415 IFT140Q96RY7 1462 aa18.33■□□□□ 0.52
ITGAE-203ENST00000570415 MAP3K13O43283 966 aa18.31■□□□□ 0.52
ITGAE-203ENST00000570415 TOPBP1Q92547 1522 aa18.31■□□□□ 0.52
ITGAE-203ENST00000570415 RNF25Q96BH1 459 aaPredicted RBP18.3■□□□□ 0.52
ITGAE-203ENST00000570415 CCDC88BA6NC98 1476 aa18.28■□□□□ 0.52
ITGAE-203ENST00000570415 PCDHB13Q9Y5F0 798 aa18.27■□□□□ 0.52
ITGAE-203ENST00000570415 SGIP1Q9BQI5 828 aa18.25■□□□□ 0.51
ITGAE-203ENST00000570415 ARAP1Q96P48 1450 aa18.25■□□□□ 0.51
ITGAE-203ENST00000570415 TARBP1Q13395 1621 aaKnown RBP18.23■□□□□ 0.51
ITGAE-203ENST00000570415 RIOK3O14730 519 aaKnown RBP18.22■□□□□ 0.51
ITGAE-203ENST00000570415 CYB5RLQ6IPT4 315 aa18.22■□□□□ 0.51
ITGAE-203ENST00000570415 AQRO60306 1485 aaKnown RBP eCLIP18.21■□□□□ 0.51
ITGAE-203ENST00000570415 ZNF467Q7Z7K2 595 aaPredicted RBP18.21■□□□□ 0.51
ITGAE-203ENST00000570415 DNMBPQ6XZF7 1577 aa18.21■□□□□ 0.51
ITGAE-203ENST00000570415 IFNL1Q8IU54 200 aa18.2■□□□□ 0.5
ITGAE-203ENST00000570415 MS4A3Q96HJ5 214 aa18.2■□□□□ 0.5
ITGAE-203ENST00000570415 PCDHB8Q9UN66 801 aa18.2■□□□□ 0.5
ITGAE-203ENST00000570415 CLCN6P51797 869 aa18.17■□□□□ 0.5
ITGAE-203ENST00000570415 GALR2O43603 387 aaPredicted RBP18.14■□□□□ 0.49
ITGAE-203ENST00000570415 SP7Q8TDD2 431 aaPredicted RBP18.14■□□□□ 0.49
ITGAE-203ENST00000570415 GABBR2O75899 941 aa18.12■□□□□ 0.49
ITGAE-203ENST00000570415 VGFO15240 615 aaPredicted RBP18.11■□□□□ 0.49
ITGAE-203ENST00000570415 POLA1P09884 1462 aaPredicted RBP18.11■□□□□ 0.49
ITGAE-203ENST00000570415 RAD54L2Q9Y4B4 1467 aa18.1■□□□□ 0.49
ITGAE-203ENST00000570415 TAOK2Q9UL54 1235 aa18.09■□□□□ 0.49
ITGAE-203ENST00000570415 ABCC8Q09428 1581 aa18.06■□□□□ 0.48
ITGAE-203ENST00000570415 TRPC6Q9Y210 931 aa18.06■□□□□ 0.48
ITGAE-203ENST00000570415 PDAP1Q13442 181 aaKnown RBP18.05■□□□□ 0.48
ITGAE-203ENST00000570415 CLASP1Q7Z460 1538 aa18.04■□□□□ 0.48
ITGAE-203ENST00000570415 SNAPC4Q5SXM2 1469 aa18.03■□□□□ 0.48
ITGAE-203ENST00000570415 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.03■□□□□ 0.48
ITGAE-203ENST00000570415 ZFP91Q96JP5 570 aaPredicted RBP18.03■□□□□ 0.48
ITGAE-203ENST00000570415 PSEN1P49768 467 aa18.02■□□□□ 0.48
ITGAE-203ENST00000570415 TDRD9Q8NDG6 1382 aaKnown RBP18.02■□□□□ 0.47
ITGAE-203ENST00000570415 CHGAP10645 457 aaKnown RBP17.97■□□□□ 0.47
ITGAE-203ENST00000570415 FGD5Q6ZNL6 1462 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms