RNA–Protein interactions for RNA: ENST00000570139.1

CNOT1-222, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 2

Gene CNOT1, Length 458 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-222	ENST00000570139	NBR1	Q14596	966 aa		13.65	□□□□□ -0.22
CNOT1-222	ENST00000570139	PABPN1	Q86U42	306 aa	Known RBP eCLIP	13.64	□□□□□ -0.23
CNOT1-222	ENST00000570139	OSCAR	Q8IYS5	282 aa		13.61	□□□□□ -0.23
CNOT1-222	ENST00000570139	DNAJC5	Q9H3Z4	198 aa		13.59	□□□□□ -0.23
CNOT1-222	ENST00000570139	HS6ST3	Q8IZP7	471 aa		13.57	□□□□□ -0.24
CNOT1-222	ENST00000570139	HAX1	O00165	279 aa		13.53	□□□□□ -0.24
CNOT1-222	ENST00000570139	PIP4P2	Q8N4L2	257 aa		13.49	□□□□□ -0.25
CNOT1-222	ENST00000570139	GSE1	Q14687	1217 aa		13.47	□□□□□ -0.25
CNOT1-222	ENST00000570139	AKT1S1	Q96B36	256 aa		13.47	□□□□□ -0.25
CNOT1-222	ENST00000570139	RNF25	Q96BH1	459 aa	Predicted RBP	13.35	□□□□□ -0.27
CNOT1-222	ENST00000570139	RIOK3	O14730	519 aa	Known RBP	13.34	□□□□□ -0.27
CNOT1-222	ENST00000570139	REM2	Q8IYK8	340 aa	Predicted RBP	13.32	□□□□□ -0.28
CNOT1-222	ENST00000570139	ERICH6	Q7L0X2	663 aa		13.3	□□□□□ -0.28
CNOT1-222	ENST00000570139	GTPBP6	O43824	516 aa	Predicted RBP	13.28	□□□□□ -0.28
CNOT1-222	ENST00000570139	FXR2	P51116	673 aa	Known RBP eCLIP	13.28	□□□□□ -0.28	2e-8	■■□□□ 12.8
CNOT1-222	ENST00000570139	NKX1-1	Q15270	411 aa	Predicted RBP	13.28	□□□□□ -0.28
CNOT1-222	ENST00000570139	RYDEN	Q9NUL5	291 aa	Known RBP	13.28	□□□□□ -0.28
CNOT1-222	ENST00000570139	VGF	O15240	615 aa	Predicted RBP	13.25	□□□□□ -0.29
CNOT1-222	ENST00000570139	NUBP1	P53384	320 aa		13.25	□□□□□ -0.29
CNOT1-222	ENST00000570139	DCAF8	Q5TAQ9	597 aa		13.25	□□□□□ -0.29
CNOT1-222	ENST00000570139	STK25	O00506	426 aa		13.24	□□□□□ -0.29
CNOT1-222	ENST00000570139	EVX2	Q03828	476 aa		13.24	□□□□□ -0.29
CNOT1-222	ENST00000570139	FAM212A	Q96EL1	285 aa		13.23	□□□□□ -0.29
CNOT1-222	ENST00000570139	TIMELESS	Q9UNS1	1208 aa		13.21	□□□□□ -0.29
CNOT1-222	ENST00000570139	GTF3C3	Q9Y5Q9	886 aa		13.21	□□□□□ -0.29
CNOT1-222	ENST00000570139	TULP1	O00294	542 aa	Predicted RBP	13.2	□□□□□ -0.3
CNOT1-222	ENST00000570139	LHX8	Q68G74	356 aa		13.18	□□□□□ -0.3
CNOT1-222	ENST00000570139	PITPNM1	O00562	1244 aa		13.17	□□□□□ -0.3
CNOT1-222	ENST00000570139	P3H3	Q8IVL6	736 aa		13.17	□□□□□ -0.3
CNOT1-222	ENST00000570139	CHRM1	P11229	460 aa	Predicted RBP	13.15	□□□□□ -0.3
CNOT1-222	ENST00000570139	SGIP1	Q9BQI5	828 aa		13.15	□□□□□ -0.3
CNOT1-222	ENST00000570139	ZCCHC6	Q5VYS8	1495 aa	Known RBP	13.13	□□□□□ -0.31
CNOT1-222	ENST00000570139	TMEM132A	Q24JP5	1023 aa		13.13	□□□□□ -0.31
CNOT1-222	ENST00000570139	PLSCR2	Q9NRY7	297 aa		13.13	□□□□□ -0.31
CNOT1-222	ENST00000570139	SPDYE1	Q8NFV5	336 aa	Predicted RBP	13.11	□□□□□ -0.31
CNOT1-222	ENST00000570139	STK24	Q9Y6E0	443 aa		13.1	□□□□□ -0.31
CNOT1-222	ENST00000570139	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.08	□□□□□ -0.32
CNOT1-222	ENST00000570139	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.05	□□□□□ -0.32
CNOT1-222	ENST00000570139	ZFP91	Q96JP5	570 aa	Predicted RBP	13.05	□□□□□ -0.32
CNOT1-222	ENST00000570139	DCAF1	Q9Y4B6	1507 aa		13.03	□□□□□ -0.32
CNOT1-222	ENST00000570139	ARX	Q96QS3	562 aa		13.02	□□□□□ -0.33
CNOT1-222	ENST00000570139	PRR29	P0C7W0	189 aa		13	□□□□□ -0.33
CNOT1-222	ENST00000570139	CREBZF	Q9NS37	354 aa		13	□□□□□ -0.33
CNOT1-222	ENST00000570139	WDR70	Q9NW82	654 aa		12.99	□□□□□ -0.33
CNOT1-222	ENST00000570139	MNX1	P50219	401 aa	Predicted RBP	12.98	□□□□□ -0.33
CNOT1-222	ENST00000570139	RASEF	Q8IZ41	740 aa		12.96	□□□□□ -0.33
CNOT1-222	ENST00000570139	CLEC11A	Q9Y240	323 aa		12.94	□□□□□ -0.34
CNOT1-222	ENST00000570139	MYO15B	Q96JP2	1530 aa		12.93	□□□□□ -0.34
CNOT1-222	ENST00000570139	GABBR2	O75899	941 aa		12.93	□□□□□ -0.34
CNOT1-222	ENST00000570139	PYGB	P11216	843 aa		12.92	□□□□□ -0.34
CNOT1-222	ENST00000570139	LMOD2	Q6P5Q4	547 aa		12.92	□□□□□ -0.34
CNOT1-222	ENST00000570139	C19orf67	A6NJJ6	358 aa		12.89	□□□□□ -0.35
CNOT1-222	ENST00000570139	KCNV2	Q8TDN2	545 aa		12.89	□□□□□ -0.35
CNOT1-222	ENST00000570139	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	12.88	□□□□□ -0.35
CNOT1-222	ENST00000570139	C14orf37	Q86TY3	774 aa		12.88	□□□□□ -0.35
CNOT1-222	ENST00000570139	ZNF467	Q7Z7K2	595 aa	Predicted RBP	12.86	□□□□□ -0.35
CNOT1-222	ENST00000570139	ABCC9	O60706	1549 aa		12.86	□□□□□ -0.35
CNOT1-222	ENST00000570139	PRKAR2A	P13861	404 aa	Known RBP	12.84	□□□□□ -0.35
CNOT1-222	ENST00000570139	NACAD	O15069	1562 aa		12.81	□□□□□ -0.36
CNOT1-222	ENST00000570139	CADPS2	Q86UW7	1296 aa		12.8	□□□□□ -0.36
CNOT1-222	ENST00000570139	PDAP1	Q13442	181 aa	Known RBP	12.78	□□□□□ -0.36
CNOT1-222	ENST00000570139	ARHGEF1	Q92888	912 aa	Known RBP	12.77	□□□□□ -0.37
CNOT1-222	ENST00000570139	HOMEZ	Q8IX15	550 aa		12.76	□□□□□ -0.37
CNOT1-222	ENST00000570139	DAXX	Q9UER7	740 aa	Predicted RBP	12.76	□□□□□ -0.37
CNOT1-222	ENST00000570139	BRPF1	P55201	1214 aa	Predicted RBP	12.74	□□□□□ -0.37
CNOT1-222	ENST00000570139	RB1CC1	Q8TDY2	1594 aa		12.72	□□□□□ -0.37
CNOT1-222	ENST00000570139	ZC3H15	Q8WU90	426 aa	Known RBP	12.68	□□□□□ -0.38
CNOT1-222	ENST00000570139	E2F4	Q16254	413 aa		12.67	□□□□□ -0.38
CNOT1-222	ENST00000570139	MFRP	Q9BY79	579 aa		12.67	□□□□□ -0.38
CNOT1-222	ENST00000570139	NEUROD2	Q15784	382 aa		12.65	□□□□□ -0.38
CNOT1-222	ENST00000570139	TSPYL2	Q9H2G4	693 aa	Predicted RBP	12.65	□□□□□ -0.38
CNOT1-222	ENST00000570139	POTEI	P0CG38	1075 aa		12.63	□□□□□ -0.39
CNOT1-222	ENST00000570139	PSEN1	P49768	467 aa		12.63	□□□□□ -0.39
CNOT1-222	ENST00000570139	TESPA1	A2RU30	521 aa	Predicted RBP	12.62	□□□□□ -0.39
CNOT1-222	ENST00000570139	ZNF579	Q8NAF0	562 aa	Known RBP	12.61	□□□□□ -0.39
CNOT1-222	ENST00000570139	PCDHB8	Q9UN66	801 aa		12.61	□□□□□ -0.39
CNOT1-222	ENST00000570139	PCDHB13	Q9Y5F0	798 aa		12.61	□□□□□ -0.39
CNOT1-222	ENST00000570139	SMYD5	Q6GMV2	418 aa		12.6	□□□□□ -0.39
CNOT1-222	ENST00000570139	NLRP6	P59044	892 aa		12.59	□□□□□ -0.39
CNOT1-222	ENST00000570139	SEMA3E	O15041	775 aa		12.57	□□□□□ -0.4
CNOT1-222	ENST00000570139	SLC24A3	Q9HC58	644 aa		12.57	□□□□□ -0.4
CNOT1-222	ENST00000570139	SOX12	O15370	315 aa		12.55	□□□□□ -0.4
CNOT1-222	ENST00000570139	PPP1R37	O75864	691 aa		12.52	□□□□□ -0.41
CNOT1-222	ENST00000570139	FBXO22	Q8NEZ5	403 aa		12.52	□□□□□ -0.41
CNOT1-222	ENST00000570139	CCDC61	Q9Y6R9	512 aa		12.52	□□□□□ -0.41
CNOT1-222	ENST00000570139	ZMYND10	O75800	440 aa		12.51	□□□□□ -0.41
CNOT1-222	ENST00000570139	FARP1	Q9Y4F1	1045 aa	Predicted RBP	12.51	□□□□□ -0.41
CNOT1-222	ENST00000570139	SCRIB	Q14160	1630 aa		12.5	□□□□□ -0.41
CNOT1-222	ENST00000570139	EFCAB3	Q8N7B9	438 aa		12.48	□□□□□ -0.41
CNOT1-222	ENST00000570139	PDE4A	P27815	886 aa		12.47	□□□□□ -0.41
CNOT1-222	ENST00000570139	CLCN6	P51797	869 aa		12.47	□□□□□ -0.41
CNOT1-222	ENST00000570139	CHADL	Q6NUI6	762 aa		12.47	□□□□□ -0.41
CNOT1-222	ENST00000570139	POTEM	A6NI47	508 aa		12.46	□□□□□ -0.41
CNOT1-222	ENST00000570139	PAK3	O75914	559 aa	Predicted RBP	12.46	□□□□□ -0.41
CNOT1-222	ENST00000570139	CABP2	Q9NPB3	220 aa		12.46	□□□□□ -0.41
CNOT1-222	ENST00000570139	PHF8	Q9UPP1	1060 aa		12.46	□□□□□ -0.41
CNOT1-222	ENST00000570139	ARIH1	Q9Y4X5	557 aa	Predicted RBP	12.46	□□□□□ -0.41
CNOT1-222	ENST00000570139	SHROOM4	Q9ULL8	1493 aa		12.46	□□□□□ -0.42
CNOT1-222	ENST00000570139	LARP6	Q9BRS8	491 aa	Known RBP	12.44	□□□□□ -0.42
CNOT1-222	ENST00000570139	MFSD10	Q14728	455 aa		12.43	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms