RNA–Protein interactions for RNA: ENST00000550893.2

SCAF11-214, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 507 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-214ENST00000550893 CLCN6P51797 869 aa12.71□□□□□ -0.37
SCAF11-214ENST00000550893 PHF12Q96QT6 1004 aa12.71□□□□□ -0.37
SCAF11-214ENST00000550893 CCDC61Q9Y6R9 512 aa12.7□□□□□ -0.38
SCAF11-214ENST00000550893 SPOCK2Q92563 424 aa12.68□□□□□ -0.38
SCAF11-214ENST00000550893 FAM212AQ96EL1 285 aa12.68□□□□□ -0.38
SCAF11-214ENST00000550893 DCAF8Q5TAQ9 597 aa12.65□□□□□ -0.38
SCAF11-214ENST00000550893 GALR2O43603 387 aaPredicted RBP12.59□□□□□ -0.39
SCAF11-214ENST00000550893 KIF12Q96FN5 646 aa12.59□□□□□ -0.39
SCAF11-214ENST00000550893 GSE1Q14687 1217 aa12.57□□□□□ -0.4
SCAF11-214ENST00000550893 MAP3K13O43283 966 aa12.55□□□□□ -0.4
SCAF11-214ENST00000550893 MS4A3Q96HJ5 214 aa12.55□□□□□ -0.4
SCAF11-214ENST00000550893 DCBLD2Q96PD2 775 aa12.54□□□□□ -0.4
SCAF11-214ENST00000550893 CIZ1Q9ULV3 898 aaPredicted RBP12.54□□□□□ -0.4
SCAF11-214ENST00000550893 PYGBP11216 843 aa12.53□□□□□ -0.4
SCAF11-214ENST00000550893 POTEIP0CG38 1075 aa12.48□□□□□ -0.41
SCAF11-214ENST00000550893 PCDHB13Q9Y5F0 798 aa12.47□□□□□ -0.41
SCAF11-214ENST00000550893 SGIP1Q9BQI5 828 aa12.46□□□□□ -0.41
SCAF11-214ENST00000550893 CHRM1P11229 460 aaPredicted RBP12.43□□□□□ -0.42
SCAF11-214ENST00000550893 IFNL1Q8IU54 200 aa12.43□□□□□ -0.42
SCAF11-214ENST00000550893 TRPC6Q9Y210 931 aa12.43□□□□□ -0.42
SCAF11-214ENST00000550893 NISCHQ9Y2I1 1504 aa12.38□□□□□ -0.43
SCAF11-214ENST00000550893 PCDHB8Q9UN66 801 aa12.38□□□□□ -0.43
SCAF11-214ENST00000550893 TRIM41Q8WV44 630 aa12.36□□□□□ -0.43
SCAF11-214ENST00000550893 ASTLQ6HA08 431 aaPredicted RBP12.35□□□□□ -0.43
SCAF11-214ENST00000550893 ATMINO43313 823 aaPredicted RBP12.34□□□□□ -0.43
SCAF11-214ENST00000550893 TIE1P35590 1138 aa12.34□□□□□ -0.43
SCAF11-214ENST00000550893 PLSCR2Q9NRY7 297 aa12.34□□□□□ -0.43
SCAF11-214ENST00000550893 BMP2KQ9NSY1 1161 aaPredicted RBP12.34□□□□□ -0.43
SCAF11-214ENST00000550893 ZNF467Q7Z7K2 595 aaPredicted RBP12.33□□□□□ -0.44
SCAF11-214ENST00000550893 PELP1Q8IZL8 1130 aaKnown RBP12.32□□□□□ -0.44
SCAF11-214ENST00000550893 ATN1P54259 1190 aaPredicted RBP12.31□□□□□ -0.44
SCAF11-214ENST00000550893 PKD2Q13563 968 aa12.31□□□□□ -0.44
SCAF11-214ENST00000550893 TTLL13PA6NNM8 815 aa12.29□□□□□ -0.44
SCAF11-214ENST00000550893 TMEM106CQ9BVX2 250 aa12.27□□□□□ -0.45
SCAF11-214ENST00000550893 ECM2O94769 699 aaPredicted RBP12.25□□□□□ -0.45
SCAF11-214ENST00000550893 RNF25Q96BH1 459 aaPredicted RBP12.25□□□□□ -0.45
SCAF11-214ENST00000550893 PSEN1P49768 467 aa12.22□□□□□ -0.45
SCAF11-214ENST00000550893 TRIM35Q9UPQ4 493 aa12.22□□□□□ -0.45
SCAF11-214ENST00000550893 PDAP1Q13442 181 aaKnown RBP12.21□□□□□ -0.45
SCAF11-214ENST00000550893 RIOK3O14730 519 aaKnown RBP12.2□□□□□ -0.46
SCAF11-214ENST00000550893 SLC39A7Q92504 469 aa12.19□□□□□ -0.46
SCAF11-214ENST00000550893 C7P10643 843 aa12.17□□□□□ -0.46
SCAF11-214ENST00000550893 METRNQ9UJH8 293 aa12.17□□□□□ -0.46
SCAF11-214ENST00000550893 RGL2O15211 777 aa12.16□□□□□ -0.46
SCAF11-214ENST00000550893 OTUD5Q96G74 571 aa12.15□□□□□ -0.46
SCAF11-214ENST00000550893 VGFO15240 615 aaPredicted RBP12.12□□□□□ -0.47
SCAF11-214ENST00000550893 IER5LQ5T953 404 aa12.11□□□□□ -0.47
SCAF11-214ENST00000550893 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.1□□□□□ -0.47
SCAF11-214ENST00000550893 POTEFA5A3E0 1075 aa12.1□□□□□ -0.47
SCAF11-214ENST00000550893 ZFP91Q96JP5 570 aaPredicted RBP12.1□□□□□ -0.47
SCAF11-214ENST00000550893 COLQQ9Y215 455 aaPredicted RBP12.08□□□□□ -0.48
SCAF11-214ENST00000550893 POTEB2H3BUK9 544 aa12.07□□□□□ -0.48
SCAF11-214ENST00000550893 GOLGA2Q08379 1002 aa12.07□□□□□ -0.48
SCAF11-214ENST00000550893 CABP2Q9NPB3 220 aa12.07□□□□□ -0.48
SCAF11-214ENST00000550893 POTEMA6NI47 508 aa12.06□□□□□ -0.48
SCAF11-214ENST00000550893 TAOK2Q9UL54 1235 aa12.06□□□□□ -0.48
SCAF11-214ENST00000550893 SEC24BO95487 1268 aa12.05□□□□□ -0.48
SCAF11-214ENST00000550893 IRX5P78411 483 aaPredicted RBP12.04□□□□□ -0.48
SCAF11-214ENST00000550893 MKRN3Q13064 507 aaKnown RBP12.04□□□□□ -0.48
SCAF11-214ENST00000550893 MAMSTRQ6ZN01 415 aa12.04□□□□□ -0.48
SCAF11-214ENST00000550893 POTEGQ6S5H5 508 aa12.02□□□□□ -0.49
SCAF11-214ENST00000550893 BCL11BQ9C0K0 894 aaPredicted RBP12.01□□□□□ -0.49
SCAF11-214ENST00000550893 PCDH10Q9P2E7 1040 aa12.01□□□□□ -0.49
SCAF11-214ENST00000550893 PLCG2P16885 1265 aa12□□□□□ -0.49
SCAF11-214ENST00000550893 STK25O00506 426 aa11.99□□□□□ -0.49
SCAF11-214ENST00000550893 POTEJP0CG39 1038 aa11.99□□□□□ -0.49
SCAF11-214ENST00000550893 EFCAB3Q8N7B9 438 aa11.99□□□□□ -0.49
SCAF11-214ENST00000550893 OCEL1Q9H607 264 aa11.99□□□□□ -0.49
SCAF11-214ENST00000550893 AMER1Q5JTC6 1135 aaPredicted RBP11.98□□□□□ -0.49
SCAF11-214ENST00000550893 STK24Q9Y6E0 443 aa11.98□□□□□ -0.49
SCAF11-214ENST00000550893 RTN4Q9NQC3 1192 aaKnown RBP11.97□□□□□ -0.49
SCAF11-214ENST00000550893 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.97□□□□□ -0.49
SCAF11-214ENST00000550893 PDCD7Q8N8D1 485 aaKnown RBP11.94□□□□□ -0.5
SCAF11-214ENST00000550893 ILDR1Q86SU0 546 aaPredicted RBP11.93□□□□□ -0.5
SCAF11-214ENST00000550893 SCUBE2Q9NQ36 999 aa11.93□□□□□ -0.5
SCAF11-214ENST00000550893 SOX12O15370 315 aa11.89□□□□□ -0.51
SCAF11-214ENST00000550893 CHGAP10645 457 aaKnown RBP11.89□□□□□ -0.51
SCAF11-214ENST00000550893 DPY19L2Q6NUT2 758 aa11.88□□□□□ -0.51
SCAF11-214ENST00000550893 HS6ST3Q8IZP7 471 aa11.88□□□□□ -0.51
SCAF11-214ENST00000550893 DCAF8L2P0C7V8 631 aa11.87□□□□□ -0.51
SCAF11-214ENST00000550893 PHF8Q9UPP1 1060 aa11.87□□□□□ -0.51
SCAF11-214ENST00000550893 MS4A4AQ96JQ5 239 aa11.83□□□□□ -0.52
SCAF11-214ENST00000550893 MFRPQ9BY79 579 aa11.82□□□□□ -0.52
SCAF11-214ENST00000550893 NLRP6P59044 892 aa11.81□□□□□ -0.52
SCAF11-214ENST00000550893 FBXO22Q8NEZ5 403 aa11.81□□□□□ -0.52
SCAF11-214ENST00000550893 FAM163AQ96GL9 167 aaPredicted RBP11.81□□□□□ -0.52
SCAF11-214ENST00000550893 L3MBTL3Q96JM7 780 aaPredicted RBP11.81□□□□□ -0.52
SCAF11-214ENST00000550893 DNAJC5Q9H3Z4 198 aa11.76□□□□□ -0.53
SCAF11-214ENST00000550893 BOLA1Q9Y3E2 137 aa11.76□□□□□ -0.53
SCAF11-214ENST00000550893 G3V3G9 751 aa11.73□□□□□ -0.53
SCAF11-214ENST00000550893 NKX1-1Q15270 411 aaPredicted RBP11.73□□□□□ -0.53
SCAF11-214ENST00000550893 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.73□□□□□ -0.53
SCAF11-214ENST00000550893 C3orf67Q6ZVT6 689 aa11.72□□□□□ -0.53
SCAF11-214ENST00000550893 SLAIN1Q8ND83 568 aa11.71□□□□□ -0.53
SCAF11-214ENST00000550893 TMEM121BQ9BXQ6 578 aaPredicted RBP11.71□□□□□ -0.53
SCAF11-214ENST00000550893 MICALL2Q8IY33 904 aa11.7□□□□□ -0.54
SCAF11-214ENST00000550893 PPP1R37O75864 691 aa11.67□□□□□ -0.54
SCAF11-214ENST00000550893 LCE2DQ5TA82 110 aaPredicted RBP11.66□□□□□ -0.54
SCAF11-214ENST00000550893 GTPBP6O43824 516 aaPredicted RBP11.6□□□□□ -0.55
SCAF11-214ENST00000550893 TMEM92Q6UXU6 159 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms