RNA–Protein interactions for RNA: ENST00000544501.1

YBX3-214, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 181 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-214ENST00000544501 TSPYL2Q9H2G4 693 aaPredicted RBP6.34□□□□□ -1.39
YBX3-214ENST00000544501 C19orf67A6NJJ6 358 aa6.33□□□□□ -1.4
YBX3-214ENST00000544501 CD44P16070 742 aaKnown RBP6.32□□□□□ -1.4
YBX3-214ENST00000544501 CCDC61Q9Y6R9 512 aa6.32□□□□□ -1.4
YBX3-214ENST00000544501 RGL2O15211 777 aa6.3□□□□□ -1.4
YBX3-214ENST00000544501 PYGBP11216 843 aa6.29□□□□□ -1.4
YBX3-214ENST00000544501 ZRANB1Q9UGI0 708 aa6.29□□□□□ -1.4
YBX3-214ENST00000544501 TAOK2Q9UL54 1235 aa6.29□□□□□ -1.4
YBX3-214ENST00000544501 RIOK3O14730 519 aaKnown RBP6.28□□□□□ -1.4
YBX3-214ENST00000544501 POTEHQ6S545 545 aa6.28□□□□□ -1.4
YBX3-214ENST00000544501 SGIP1Q9BQI5 828 aa6.28□□□□□ -1.4
YBX3-214ENST00000544501 HAX1O00165 279 aa6.27□□□□□ -1.41
YBX3-214ENST00000544501 DCAF8L2P0C7V8 631 aa6.26□□□□□ -1.41
YBX3-214ENST00000544501 ZNF467Q7Z7K2 595 aaPredicted RBP6.26□□□□□ -1.41
YBX3-214ENST00000544501 ZNF579Q8NAF0 562 aaKnown RBP6.26□□□□□ -1.41
YBX3-214ENST00000544501 RNF25Q96BH1 459 aaPredicted RBP6.26□□□□□ -1.41
YBX3-214ENST00000544501 KIF12Q96FN5 646 aa6.26□□□□□ -1.41
YBX3-214ENST00000544501 CLCN6P51797 869 aa6.25□□□□□ -1.41
YBX3-214ENST00000544501 VGFO15240 615 aaPredicted RBP6.24□□□□□ -1.41
YBX3-214ENST00000544501 PCDHB13Q9Y5F0 798 aa6.23□□□□□ -1.41
YBX3-214ENST00000544501 MAP3K13O43283 966 aa6.22□□□□□ -1.41
YBX3-214ENST00000544501 PHF12Q96QT6 1004 aa6.22□□□□□ -1.41
YBX3-214ENST00000544501 PDAP1Q13442 181 aaKnown RBP6.2□□□□□ -1.42
YBX3-214ENST00000544501 IFNL1Q8IU54 200 aa6.2□□□□□ -1.42
YBX3-214ENST00000544501 HS6ST3Q8IZP7 471 aa6.2□□□□□ -1.42
YBX3-214ENST00000544501 PCDHB8Q9UN66 801 aa6.2□□□□□ -1.42
YBX3-214ENST00000544501 CHGAP10645 457 aaKnown RBP6.19□□□□□ -1.42
YBX3-214ENST00000544501 EVX2Q03828 476 aa6.19□□□□□ -1.42
YBX3-214ENST00000544501 BBXQ8WY36 941 aaPredicted RBP6.19□□□□□ -1.42
YBX3-214ENST00000544501 DNAJC5Q9H3Z4 198 aa6.19□□□□□ -1.42
YBX3-214ENST00000544501 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.17□□□□□ -1.42
YBX3-214ENST00000544501 STK25O00506 426 aa6.17□□□□□ -1.42
YBX3-214ENST00000544501 ZFP91Q96JP5 570 aaPredicted RBP6.17□□□□□ -1.42
YBX3-214ENST00000544501 PSEN1P49768 467 aa6.16□□□□□ -1.42
YBX3-214ENST00000544501 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.16□□□□□ -1.42
YBX3-214ENST00000544501 MS4A3Q96HJ5 214 aa6.15□□□□□ -1.42
YBX3-214ENST00000544501 BCL11BQ9C0K0 894 aaPredicted RBP6.15□□□□□ -1.42
YBX3-214ENST00000544501 STK24Q9Y6E0 443 aa6.14□□□□□ -1.43
YBX3-214ENST00000544501 TIE1P35590 1138 aa6.13□□□□□ -1.43
YBX3-214ENST00000544501 GALR2O43603 387 aaPredicted RBP6.12□□□□□ -1.43
YBX3-214ENST00000544501 GABBR2O75899 941 aa6.11□□□□□ -1.43
YBX3-214ENST00000544501 PLCB2Q00722 1185 aa6.11□□□□□ -1.43
YBX3-214ENST00000544501 TMEM106CQ9BVX2 250 aa6.1□□□□□ -1.43
YBX3-214ENST00000544501 RYDENQ9NUL5 291 aaKnown RBP6.1□□□□□ -1.43
YBX3-214ENST00000544501 SPRYD3Q8NCJ5 442 aa6.09□□□□□ -1.43
YBX3-214ENST00000544501 SP7Q8TDD2 431 aaPredicted RBP6.09□□□□□ -1.43
YBX3-214ENST00000544501 TRPC6Q9Y210 931 aa6.09□□□□□ -1.43
YBX3-214ENST00000544501 TTLL13PA6NNM8 815 aa6.08□□□□□ -1.44
YBX3-214ENST00000544501 NKX1-1Q15270 411 aaPredicted RBP6.08□□□□□ -1.44
YBX3-214ENST00000544501 BMP2KQ9NSY1 1161 aaPredicted RBP6.08□□□□□ -1.44
YBX3-214ENST00000544501 SOX12O15370 315 aa6.07□□□□□ -1.44
YBX3-214ENST00000544501 CABP2Q9NPB3 220 aa6.07□□□□□ -1.44
YBX3-214ENST00000544501 GOLGA2Q08379 1002 aa6.06□□□□□ -1.44
YBX3-214ENST00000544501 ASTLQ6HA08 431 aaPredicted RBP6.06□□□□□ -1.44
YBX3-214ENST00000544501 PAXIP1Q6ZW49 1069 aaPredicted RBP6.06□□□□□ -1.44
YBX3-214ENST00000544501 ATMINO43313 823 aaPredicted RBP6.05□□□□□ -1.44
YBX3-214ENST00000544501 GTPBP6O43824 516 aaPredicted RBP6.05□□□□□ -1.44
YBX3-214ENST00000544501 EFCAB3Q8N7B9 438 aa6.05□□□□□ -1.44
YBX3-214ENST00000544501 SLC24A1O60721 1099 aa6.04□□□□□ -1.44
YBX3-214ENST00000544501 MKRN3Q13064 507 aaKnown RBP6.04□□□□□ -1.44
YBX3-214ENST00000544501 CFAP44Q96MT7 982 aa6.04□□□□□ -1.44
YBX3-214ENST00000544501 DCBLD2Q96PD2 775 aa6.04□□□□□ -1.44
YBX3-214ENST00000544501 TRIM35Q9UPQ4 493 aa6.04□□□□□ -1.44
YBX3-214ENST00000544501 NLRP6P59044 892 aa6.03□□□□□ -1.44
YBX3-214ENST00000544501 MFRPQ9BY79 579 aa6.03□□□□□ -1.44
YBX3-214ENST00000544501 ATN1P54259 1190 aaPredicted RBP6.02□□□□□ -1.45
YBX3-214ENST00000544501 IER5LQ5T953 404 aa6.02□□□□□ -1.45
YBX3-214ENST00000544501 ILDR1Q86SU0 546 aaPredicted RBP6.01□□□□□ -1.45
YBX3-214ENST00000544501 FBXO22Q8NEZ5 403 aa6.01□□□□□ -1.45
YBX3-214ENST00000544501 PHF8Q9UPP1 1060 aa6□□□□□ -1.45
YBX3-214ENST00000544501 HAP1P54257 671 aaPredicted RBP5.99□□□□□ -1.45
YBX3-214ENST00000544501 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.98□□□□□ -1.458e-7■■□□□ 12.6
YBX3-214ENST00000544501 C7P10643 843 aa5.97□□□□□ -1.45
YBX3-214ENST00000544501 IRX5P78411 483 aaPredicted RBP5.97□□□□□ -1.45
YBX3-214ENST00000544501 SLC39A7Q92504 469 aa5.97□□□□□ -1.45
YBX3-214ENST00000544501 OCEL1Q9H607 264 aa5.97□□□□□ -1.45
YBX3-214ENST00000544501 POTEIP0CG38 1075 aa5.96□□□□□ -1.46
YBX3-214ENST00000544501 PELP1Q8IZL8 1130 aaKnown RBP5.96□□□□□ -1.46
YBX3-214ENST00000544501 MS4A4AQ96JQ5 239 aa5.96□□□□□ -1.46
YBX3-214ENST00000544501 VSIG10Q8N0Z9 540 aa5.95□□□□□ -1.46
YBX3-214ENST00000544501 PLCG2P16885 1265 aa5.94□□□□□ -1.46
YBX3-214ENST00000544501 PDCD7Q8N8D1 485 aaKnown RBP5.94□□□□□ -1.46
YBX3-214ENST00000544501 TSHZ2Q9NRE2 1034 aa5.94□□□□□ -1.46
YBX3-214ENST00000544501 PPP1R37O75864 691 aa5.93□□□□□ -1.46
YBX3-214ENST00000544501 SEC24BO95487 1268 aa5.93□□□□□ -1.46
YBX3-214ENST00000544501 METRNQ9UJH8 293 aa5.92□□□□□ -1.46
YBX3-214ENST00000544501 L3MBTL3Q96JM7 780 aaPredicted RBP5.91□□□□□ -1.46
YBX3-214ENST00000544501 COLQQ9Y215 455 aaPredicted RBP5.9□□□□□ -1.46
YBX3-214ENST00000544501 POTEFA5A3E0 1075 aa5.89□□□□□ -1.47
YBX3-214ENST00000544501 DPY19L2Q6NUT2 758 aa5.89□□□□□ -1.47
YBX3-214ENST00000544501 TMEM121BQ9BXQ6 578 aaPredicted RBP5.89□□□□□ -1.47
YBX3-214ENST00000544501 BOLA1Q9Y3E2 137 aa5.89□□□□□ -1.47
YBX3-214ENST00000544501 G3V3G9 751 aa5.88□□□□□ -1.47
YBX3-214ENST00000544501 MICALL2Q8IY33 904 aa5.87□□□□□ -1.47
YBX3-214ENST00000544501 KDM2AQ9Y2K7 1162 aa5.87□□□□□ -1.47
YBX3-214ENST00000544501 CADPS2Q86UW7 1296 aa5.86□□□□□ -1.47
YBX3-214ENST00000544501 PDE4AP27815 886 aa5.85□□□□□ -1.47
YBX3-214ENST00000544501 CRISPLD2Q9H0B8 497 aa5.84□□□□□ -1.47
YBX3-214ENST00000544501 NCKAP5LQ9HCH0 1330 aa5.83□□□□□ -1.48
YBX3-214ENST00000544501 WDR70Q9NW82 654 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms